Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003154.1

Orthogroup ID

OG0031247

Physical Location & Seq

Genomic Coordinates Forward (+)

53252 .. 53752

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgcccatattgctaaaagaccccgagaaatgtaagtttcacccagagcaattgatcaagcagattgtctacatatatgttcatctggcaagaggcgatacagacactacttttgcagctgccatctcgaaagatggtaggtcttccaatgaccaattgtttagtgctgccgcggatgtcttgaggaaaattggtgaagatgggagggtcatacaagagtttgttgagcttggttccaaagctgaggttgctgcttcggaggccttggacgctgaagctgcacttggagatataccagatgagttcctagacccaattcagtacactttaatgaaggatccagttatcctaccttcttcaagaatcacaatagaccggccagtcattcagaggcatcttcttagtgataatactgatccattcaatcgttcccatcttactgcggacatgttgataccagacaatgaattgaaagcaaaaatacaagagttcattaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0030433 GO:0032446 GO:0033554 GO:0034450 GO:0034976 GO:0036211 GO:0036503 GO:0042221 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051603 GO:0051716 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04120 ko04141 map04120 map04141

Pfam Domains

Protein Families

U-box Ufd2P_core

Protein Analysis

166

Amino Acids

18.56

Weight (kDa)

4.87

Isoelectric Point (pI)

32.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ufd2P_core	PF10408	6 - 82	3.2e-15	Ubiquitin elongating factor core
U-box	PF04564	98 - 165	7.1e-31	U-box domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031247)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_co8213570.1_g000001 Rmu_sc0003154.1_g000009

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	173
AciI	CCGC	3 cut(s)	171, 173, 443
AclWI	GGATC	3 cut(s)	332, 345, 410
AcoI	YGGCCR	1 cut(s)	377
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	323
AflIII	ACRYGT	1 cut(s)	447
AgsI	TTSAA	3 cut(s)	360, 424, 472
AjuI	GAANNNNNNNTTGG	2 cut(s)	267, 299
AluBI	AGCT	4 cut(s)	119, 229, 242, 278
AluI	AGCT	4 cut(s)	119, 229, 242, 278
AlwI	GGATC	3 cut(s)	332, 345, 410
Ama87I	CYCGRG	1 cut(s)	23
AoxI	GGCC	2 cut(s)	261, 377
ApeKI	GCWGC	5 cut(s)	116, 119, 167, 251, 278
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AsuHPI	GGTGA	2 cut(s)	32, 206
AvaI	CYCGRG	1 cut(s)	23
BamHI	GGATCC	1 cut(s)	337
BbsI	GAAGAC	1 cut(s)	135
BbvCI	CCTCAGC	1 cut(s)	243
BbvI	GCAGC	5 cut(s)	106, 128, 154, 238, 265
BccI	CCATC	4 cut(s)	128, 131, 194, 441
BclI	TGATCA	1 cut(s)	54
BfaI	CTAG	1 cut(s)	308
BisI	GCNGC	6 cut(s)	117, 120, 168, 171, 252, 279
BlsI	GCNGC	6 cut(s)	118, 121, 169, 172, 253, 280
BmeT110I	CYCGRG	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	235, 339
BmsI	GCATC	1 cut(s)	403
BpiI	GAAGAC	1 cut(s)	135
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	202
BsaJI	CCNNGG	2 cut(s)	171, 264
Bse118I	RCCGGY	1 cut(s)	375
Bse1I	ACTGG	2 cut(s)	341, 380
BseDI	CCNNGG	2 cut(s)	171, 264
BseGI	GGATG	1 cut(s)	181
BseMII	CTCAG	1 cut(s)	234
BseNI	ACTGG	2 cut(s)	341, 380
BseXI	GCAGC	5 cut(s)	106, 128, 154, 238, 265
BsgI	GTGCAG	1 cut(s)	264
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	263, 379
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	376
BsnI	GGCC	2 cut(s)	263, 379
BsoBI	CYCGRG	1 cut(s)	23
Bsp143I	GATC	3 cut(s)	54, 337, 415
BspACI	CCGC	3 cut(s)	171, 173, 443
BspANI	GGCC	2 cut(s)	263, 379
BspCNI	CTCAG	1 cut(s)	235
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	2 cut(s)	235, 339
BspPI	GGATC	3 cut(s)	332, 345, 410
BsrFI	RCCGGY	1 cut(s)	375
BsrI	ACTGG	2 cut(s)	341, 380
BssAI	RCCGGY	1 cut(s)	375
BssECI	CCNNGG	2 cut(s)	171, 264
BssMI	GATC	3 cut(s)	54, 337, 415
BssT1I	CCWWGG	1 cut(s)	264
BstDEI	CTNAG	2 cut(s)	243, 401
BstDSI	CCRYGG	1 cut(s)	171
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	3 cut(s)	57, 340, 418
BstMBI	GATC	3 cut(s)	54, 337, 415
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 248, 260, 269, 278
BstNSI	RCATGY	1 cut(s)	451
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	5 cut(s)	106, 128, 154, 238, 265
BstV2I	GAAGAC	1 cut(s)	135
BstX2I	RGATCY	1 cut(s)	337
BstYI	RGATCY	1 cut(s)	337
BsuRI	GGCC	2 cut(s)	263, 379
BtgI	CCRYGG	1 cut(s)	171
BtsCI	GGATG	1 cut(s)	181
Cfr10I	RCCGGY	1 cut(s)	375
Cfr42I	CCGCGG	1 cut(s)	174
CseI	GACGC	1 cut(s)	278
Csp6I	GTAC	1 cut(s)	322
CviAII	CATG	1 cut(s)	448
CviJI	RGCY	6 cut(s)	119, 229, 242, 263, 278, 379
CviKI_1	RGCY	6 cut(s)	119, 229, 242, 263, 278, 379
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	2 cut(s)	243, 401
DpnI	GATC	3 cut(s)	56, 339, 417
DpnII	GATC	3 cut(s)	54, 337, 415
DrdI	GACNNNNNNGTC	1 cut(s)	380
DseDI	GACNNNNNNGTC	1 cut(s)	380
EaeI	YGGCCR	1 cut(s)	377
Eco130I	CCWWGG	1 cut(s)	264
Eco147I	AGGCCT	1 cut(s)	263
Eco57I	CTGAAG	1 cut(s)	294
Eco88I	CYCGRG	1 cut(s)	23
EcoT14I	CCWWGG	1 cut(s)	264
ErhI	CCWWGG	1 cut(s)	264
FaeI	CATG	1 cut(s)	451
FaiI	YATR	7 cut(s)	8, 74, 76, 78, 212, 293, 449
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FatI	CATG	1 cut(s)	447
FbaI	TGATCA	1 cut(s)	54
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	6 cut(s)	117, 120, 168, 171, 252, 279
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	6 cut(s)	117, 120, 168, 171, 252, 279
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	6 cut(s)	117, 120, 168, 171, 252, 279
HaeIII	GGCC	2 cut(s)	263, 379
HapII	CCGG	1 cut(s)	376
HgaI	GACGC	1 cut(s)	278
Hin1II	CATG	1 cut(s)	451
HinfI	GANTC	1 cut(s)	363
HpaII	CCGG	1 cut(s)	376
HphI	GGTGA	2 cut(s)	32, 206
Hpy166II	GTNNAC	2 cut(s)	70, 324
Hpy188I	TCNGA	2 cut(s)	259, 390
Hpy188III	TCNNGA	3 cut(s)	127, 181, 360
Hpy8I	GTNNAC	2 cut(s)	70, 324
HpyAV	CCTTC	2 cut(s)	328, 363
HpyCH4V	TGCA	2 cut(s)	116, 281
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 248, 260, 269, 278
HpyF3I	CTNAG	2 cut(s)	243, 401
Hsp92II	CATG	1 cut(s)	451
Ksp22I	TGATCA	1 cut(s)	54
KspI	CCGCGG	1 cut(s)	174
Kzo9I	GATC	3 cut(s)	54, 337, 415
LpnPI	CCDG	7 cut(s)	57, 71, 309, 354, 389, 393, 471
Lsp1109I	GCAGC	5 cut(s)	106, 128, 154, 238, 265
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	308
MalI	GATC	3 cut(s)	56, 339, 417
MboI	GATC	3 cut(s)	54, 337, 415
MboII	GAAGA	4 cut(s)	135, 209, 348, 389
MfeI	CAATTG	2 cut(s)	50, 155
MflI	RGATCY	1 cut(s)	337
MluCI	AATT	5 cut(s)	50, 155, 189, 315, 467
MnlI	CCTC	6 cut(s)	86, 177, 198, 238, 253, 384
MseI	TTAA	1 cut(s)	329
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	2 cut(s)	119, 173
MspI	CCGG	1 cut(s)	376
MunI	CAATTG	2 cut(s)	50, 155
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	5 cut(s)	10, 248, 260, 269, 278
NdeII	GATC	3 cut(s)	54, 337, 415
NlaIII	CATG	1 cut(s)	451
NlaIV	GGNNCC	2 cut(s)	235, 339
NspI	RCATGY	1 cut(s)	451
PceI	AGGCCT	1 cut(s)	263
PciI	ACATGT	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	363
PkrI	GCNGC	6 cut(s)	118, 121, 169, 172, 253, 280
PscI	ACATGT	1 cut(s)	447
PspN4I	GGNNCC	2 cut(s)	235, 339
PsuI	RGATCY	1 cut(s)	337
PvuII	CAGCTG	1 cut(s)	119
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	329
SacII	CCGCGG	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	329
SatI	GCNGC	6 cut(s)	117, 120, 168, 171, 252, 279
Sau3AI	GATC	3 cut(s)	54, 337, 415
SetI	ASST	8 cut(s)	121, 143, 231, 244, 249, 280, 355, 500
SfaNI	GCATC	1 cut(s)	403
Sfr303I	CCGCGG	1 cut(s)	174
SgrBI	CCGCGG	1 cut(s)	174
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	181
SmoI	CTYRAG	1 cut(s)	181
Sse9I	AATT	5 cut(s)	50, 155, 189, 315, 467
SseBI	AGGCCT	1 cut(s)	263
SsiI	CCGC	3 cut(s)	171, 173, 443
SspMI	CTAG	1 cut(s)	308
StuI	AGGCCT	1 cut(s)	263
StyI	CCWWGG	1 cut(s)	264
TaqI	TCGA	1 cut(s)	128
TasI	AATT	5 cut(s)	50, 155, 189, 315, 467
TatI	WGTACW	1 cut(s)	321
TauI	GCSGC	1 cut(s)	173
TfiI	GAWTC	1 cut(s)	363
Tru1I	TTAA	1 cut(s)	329
Tru9I	TTAA	1 cut(s)	329
TseI	GCWGC	5 cut(s)	116, 119, 167, 251, 278
TspDTI	ATGAA	4 cut(s)	71, 347, 480, 481
XceI	RCATGY	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	69
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.