Rmu_sc0003156.1_g000001

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003156.1
OG0031248
Physical Location & Seq
Reverse (-)
1 .. 495
495 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 150 bp
atggctgtttcagatgaggagaaagattatgaggacgaggaagaggaggaggaggaggaggagcaggccggtaggggtggccgacttctcggatttatgttcggcaatgtcaatgactcgggacatcttgatgtcgattatcttgatgag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

50

Amino Acids

5.73

Weight (kDa)

4.05

Isoelectric Point (pI)

77.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP-binding PF09247 18 - 50 2.3e-08 TATA box-binding protein binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031248)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003156.1_g000001 Rmu_sc0007709.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 79
Ama87I CYCGRG 1 cut(s) 118
AoxI GGCC 2 cut(s) 66, 79
AvaI CYCGRG 1 cut(s) 118
BmeT110I CYCGRG 1 cut(s) 118
Bse118I RCCGGY 1 cut(s) 68
Bse3DI GCAATG 1 cut(s) 112
BseMI GCAATG 1 cut(s) 112
BseRI GAGGAG 7 cut(s) 32, 59, 62, 65, 68, 71, 74
BshFI GGCC 2 cut(s) 68, 81
BsiHKCI CYCGRG 1 cut(s) 118
BsiSI CCGG 1 cut(s) 69
BslFI GGGAC 1 cut(s) 135
BsmFI GGGAC 1 cut(s) 135
BsnI GGCC 2 cut(s) 68, 81
BsoBI CYCGRG 1 cut(s) 118
BspANI GGCC 2 cut(s) 68, 81
BsrDI GCAATG 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 68
BssAI RCCGGY 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 36
BstC8I GCNNGC 1 cut(s) 66
BsuRI GGCC 2 cut(s) 68, 81
Cac8I GCNNGC 1 cut(s) 66
Cfr10I RCCGGY 1 cut(s) 68
CviJI RGCY 3 cut(s) 5, 68, 81
CviKI_1 RGCY 3 cut(s) 5, 68, 81
EaeI YGGCCR 1 cut(s) 79
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco88I CYCGRG 1 cut(s) 118
FaiI YATR 2 cut(s) 30, 98
FaqI GGGAC 1 cut(s) 135
HaeIII GGCC 2 cut(s) 68, 81
HapII CCGG 1 cut(s) 69
HinfI GANTC 1 cut(s) 116
HpaII CCGG 1 cut(s) 69
Hpy188I TCNGA 2 cut(s) 13, 92
Hpy188III TCNNGA 3 cut(s) 120, 128, 143
LmnI GCTCC 1 cut(s) 61
LpnPI CCDG 2 cut(s) 50, 82
MboII GAAGA 1 cut(s) 53
MlyI GAGTC 1 cut(s) 110
MnlI CCTC 9 cut(s) 10, 25, 31, 37, 40, 43, 46, 49, 52
MslI CAYNNNNRTG 1 cut(s) 129
MspI CCGG 1 cut(s) 69
PleI GAGTC 1 cut(s) 110
PpsI GAGTC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 129
SchI GAGTC 1 cut(s) 110
SgeI CNNG 7 cut(s) 49, 77, 81, 101, 130, 132, 140
SmiMI CAYNNNNRTG 1 cut(s) 129
TaqI TCGA 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.