Rmu_sc0007709.1_g000012

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007709.1
OG0031248
Physical Location & Seq
Forward (+)
58141 .. 59854
1714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007709.1_g000012.1.cds

Sequence Viewer

Length: 363 bp
atgagaggaatcctaacttctggcattgataagcgcaaattcatcctccttcctagggccggttgggccgaaccaaccggttttcaaaccggaccatacagtattgggccaaattctcggcctatcgaagtttcgactcgactgagctgtatcgagacacgtatttggctccgctacgatgaggagaaagattatgaggacgaggaagaggaggaggaggaggaggagcaggccggtaggggtggccgacttctcggatttatgtttggcaatgtcaatgactcgggacatcttgatgtcgattatcttgatgaggtaaaccttacttttcatcttaattcttgtgctcacacaactaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

120

Amino Acids

13.68

Weight (kDa)

4.55

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031248)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003156.1_g000001 Rmu_sc0007709.1_g000012

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 172
AcoI YGGCCR 1 cut(s) 244
AcsI RAATTY 2 cut(s) 38, 112
AfiI CCNNNNNNNGG 2 cut(s) 55, 59
AflIII ACRYGT 1 cut(s) 158
AgeI ACCGGT 1 cut(s) 77
AgsI TTSAA 1 cut(s) 86
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 1 cut(s) 149
Ama87I CYCGRG 1 cut(s) 283
AoxI GGCC 6 cut(s) 57, 66, 107, 119, 231, 244
ApoI RAATTY 2 cut(s) 38, 112
AsiGI ACCGGT 1 cut(s) 77
AspA2I CCTAGG 1 cut(s) 53
AspLEI GCGC 1 cut(s) 36
AspS9I GGNCC 4 cut(s) 57, 66, 92, 107
AvaI CYCGRG 1 cut(s) 283
AvaII GGWCC 1 cut(s) 92
AvrII CCTAGG 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 54
BglI GCCNNNNNGGC 1 cut(s) 65
BlnI CCTAGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 92
BmeT110I CYCGRG 1 cut(s) 283
BmgT120I GGNCC 4 cut(s) 57, 66, 92, 107
BmiI GGNNCC 1 cut(s) 170
BsaAI YACGTR 1 cut(s) 161
BsaJI CCNNGG 1 cut(s) 53
BsaWI WCCGGW 2 cut(s) 77, 89
Bsc4I CCNNNNNNNGG 2 cut(s) 55, 59
Bse118I RCCGGY 3 cut(s) 59, 77, 233
Bse3DI GCAATG 1 cut(s) 277
BseDI CCNNGG 1 cut(s) 53
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 2 cut(s) 55, 59
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 134
BseRI GAGGAG 7 cut(s) 197, 224, 227, 230, 233, 236, 239
BshFI GGCC 6 cut(s) 59, 68, 109, 121, 233, 246
BshTI ACCGGT 1 cut(s) 77
BsiHKAI GWGCWC 1 cut(s) 349
BsiHKCI CYCGRG 1 cut(s) 283
BsiSI CCGG 4 cut(s) 60, 78, 90, 234
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 2 cut(s) 55, 59
BsmAI GTCTC 1 cut(s) 149
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 6 cut(s) 59, 68, 109, 121, 233, 246
BsoBI CYCGRG 1 cut(s) 283
Bsp1286I GDGCHC 1 cut(s) 349
BspACI CCGC 1 cut(s) 172
BspANI GGCC 6 cut(s) 59, 68, 109, 121, 233, 246
BspCNI CTCAG 1 cut(s) 135
BspLI GGNNCC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 3 cut(s) 59, 77, 233
BssAI RCCGGY 3 cut(s) 59, 77, 233
BssECI CCNNGG 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 53
Bst4CI ACNGT 1 cut(s) 101
Bst6I CTCTTC 1 cut(s) 201
BstBAI YACGTR 1 cut(s) 161
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 149
BstMWI GCNNNNNNNGC 1 cut(s) 65
BsuRI GGCC 6 cut(s) 59, 68, 109, 121, 233, 246
BtsCI GGATG 1 cut(s) 42
Cac8I GCNNGC 1 cut(s) 231
CfoI GCGC 1 cut(s) 36
Cfr10I RCCGGY 3 cut(s) 59, 77, 233
Cfr13I GGNCC 4 cut(s) 57, 66, 92, 107
CspAI ACCGGT 1 cut(s) 77
CviJI RGCY 8 cut(s) 59, 68, 109, 121, 147, 169, 233, 246
CviKI_1 RGCY 8 cut(s) 59, 68, 109, 121, 147, 169, 233, 246
DdeI CTNAG 1 cut(s) 143
EaeI YGGCCR 1 cut(s) 244
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 92
Eco88I CYCGRG 1 cut(s) 283
EcoT14I CCWWGG 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 53
FaiI YATR 3 cut(s) 97, 195, 263
FaqI GGGAC 1 cut(s) 300
FokI GGATG 1 cut(s) 29
FspBI CTAG 1 cut(s) 54
GlaI GCGC 1 cut(s) 35
HaeIII GGCC 6 cut(s) 59, 68, 109, 121, 233, 246
HapII CCGG 4 cut(s) 60, 78, 90, 234
HhaI GCGC 1 cut(s) 36
Hin6I GCGC 1 cut(s) 34
HinP1I GCGC 1 cut(s) 34
HinfI GANTC 3 cut(s) 9, 136, 281
HpaII CCGG 4 cut(s) 60, 78, 90, 234
Hpy166II GTNNAC 1 cut(s) 319
Hpy188I TCNGA 1 cut(s) 257
Hpy188III TCNNGA 4 cut(s) 154, 285, 293, 308
Hpy8I GTNNAC 1 cut(s) 319
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 101
HpyCH4IV ACGT 1 cut(s) 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 143
HpySE526I ACGT 1 cut(s) 160
HspAI GCGC 1 cut(s) 34
LmnI GCTCC 2 cut(s) 174, 226
LpnPI CCDG 6 cut(s) 6, 73, 91, 103, 215, 247
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 160
MboII GAAGA 1 cut(s) 218
MhlI GDGCHC 1 cut(s) 349
MluCI AATT 3 cut(s) 38, 112, 337
MlyI GAGTC 2 cut(s) 130, 275
MseI TTAA 1 cut(s) 336
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 4 cut(s) 60, 78, 90, 234
MwoI GCNNNNNNNGC 1 cut(s) 65
NlaIV GGNNCC 1 cut(s) 170
NmeAIII GCCGAG 1 cut(s) 97
PfeI GAWTC 1 cut(s) 9
PinAI ACCGGT 1 cut(s) 77
PleI GAGTC 2 cut(s) 130, 275
PpsI GAGTC 2 cut(s) 130, 275
Ppu21I YACGTR 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 170
PspPI GGNCC 4 cut(s) 57, 66, 92, 107
RseI CAYNNNNRTG 1 cut(s) 294
SaqAI TTAA 1 cut(s) 336
Sau96I GGNCC 4 cut(s) 57, 66, 92, 107
SchI GAGTC 2 cut(s) 130, 275
SduI GDGCHC 1 cut(s) 349
SetI ASST 4 cut(s) 149, 163, 318, 324
SfiI GGCCNNNNNGGCC 1 cut(s) 65
SinI GGWCC 1 cut(s) 92
SmiMI CAYNNNNRTG 1 cut(s) 294
Sse9I AATT 3 cut(s) 38, 112, 337
SsiI CCGC 1 cut(s) 172
SspMI CTAG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 53
TaaI ACNGT 1 cut(s) 101
TaiI ACGT 1 cut(s) 163
TaqI TCGA 5 cut(s) 126, 134, 139, 153, 300
TasI AATT 3 cut(s) 38, 112, 337
TfiI GAWTC 1 cut(s) 9
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TspDTI ATGAA 2 cut(s) 31, 320
VpaK11BI GGWCC 1 cut(s) 92
XapI RAATTY 2 cut(s) 38, 112
XmaJI CCTAGG 1 cut(s) 53
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.