Rmu_sc0003207.1_g000039

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003207.1
OG0031250
Physical Location & Seq
Reverse (-)
148549 .. 149031
483 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 483 bp
atggatgattctctccagtacaagtatctgaatgaagaagacctcagaaggctgtgggtctcactcgaagaacgctttggcaatgtctgtgactctttgcttttgcttcttgacctagaagtgagatggcataatctttgtttctgtgatttcaagtcagttcttgactacaacttggaatcacttcgtattaaatccttaatggaattctgtggaaaagatatcacagatgtgatgttgattgagaggactctctctaccttccccatctctgctttgatggttgctaagaactatcgaatcgatgttactgcaggatggatcacaaggtttcatgagctcattggagccatgaatgttgttgaaaagcatgacaacatccttgtaaaaaactataattcgagactcgtgggaatagagactattccgaagtccaattatagttgcgcccttaaggaagggcaccaagagcaaaaatcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

160

Amino Acids

18.68

Weight (kDa)

5.39

Isoelectric Point (pI)

47.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031250)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003207.1_g000039 Rmu_sc0007418.1_g000034

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 462
AclWI GGATC 1 cut(s) 329
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 1 cut(s) 20
AflII CTTAAG 1 cut(s) 452
AgsI TTSAA 2 cut(s) 154, 365
AjuI GAANNNNNNNTTGG 2 cut(s) 60, 92
AleI CACNNNNGTG 1 cut(s) 230
AluBI AGCT 1 cut(s) 340
AluI AGCT 1 cut(s) 340
Alw21I GWGCWC 1 cut(s) 342
Alw26I GTCTC 3 cut(s) 64, 397, 413
AlwI GGATC 1 cut(s) 329
ApoI RAATTY 1 cut(s) 206
Asp700I GAANNNNTTC 1 cut(s) 183
AspLEI GCGC 1 cut(s) 449
BaeGI GKGCMC 1 cut(s) 465
BanI GGYRCC 1 cut(s) 462
BanII GRGCYC 1 cut(s) 342
BauI CACGAG 1 cut(s) 407
BbsI GAAGAC 1 cut(s) 45
Bbv12I GWGCWC 1 cut(s) 342
BccI CCATC 4 cut(s) 120, 274, 275, 312
BcgI CGANNNNNNTGC 2 cut(s) 293, 327
BcoDI GTCTC 3 cut(s) 64, 397, 413
BfaI CTAG 1 cut(s) 116
BfmI CTRYAG 1 cut(s) 312
BfrI CTTAAG 1 cut(s) 452
BmiI GGNNCC 2 cut(s) 349, 464
BpiI GAAGAC 1 cut(s) 45
Bsa29I ATCGAT 1 cut(s) 303
BsaI GGTCTC 1 cut(s) 64
Bse1I ACTGG 1 cut(s) 16
Bse3DI GCAATG 1 cut(s) 88
BseCI ATCGAT 1 cut(s) 303
BseGI GGATG 3 cut(s) 10, 323, 378
BseMI GCAATG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 58
BseNI ACTGG 1 cut(s) 16
BseSI GKGCMC 1 cut(s) 465
BshNI GGYRCC 1 cut(s) 462
BshVI ATCGAT 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 342
BsmAI GTCTC 3 cut(s) 64, 397, 413
Bso31I GGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 342, 465
Bsp143I GATC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 57
BspDI ATCGAT 1 cut(s) 303
BspHI TCATGA 1 cut(s) 334
BspLI GGNNCC 2 cut(s) 349, 464
BspMAI CTGCAG 1 cut(s) 316
BspPI GGATC 1 cut(s) 329
BspT107I GGYRCC 1 cut(s) 462
BspTI CTTAAG 1 cut(s) 452
BspTNI GGTCTC 1 cut(s) 64
BsrDI GCAATG 1 cut(s) 88
BsrI ACTGG 1 cut(s) 16
BssMI GATC 1 cut(s) 321
BssSI CACGAG 1 cut(s) 407
Bst2BI CACGAG 1 cut(s) 407
BstAFI CTTAAG 1 cut(s) 452
BstDEI CTNAG 3 cut(s) 44, 288, 480
BstF5I GGATG 3 cut(s) 10, 323, 378
BstHHI GCGC 1 cut(s) 449
BstKTI GATC 1 cut(s) 324
BstMAI GTCTC 3 cut(s) 64, 397, 413
BstMBI GATC 1 cut(s) 321
BstMWI GCNNNNNNNGC 1 cut(s) 469
BstSFI CTRYAG 1 cut(s) 312
BstSLI GKGCMC 1 cut(s) 465
BstV2I GAAGAC 1 cut(s) 45
Bsu15I ATCGAT 1 cut(s) 303
BsuTUI ATCGAT 1 cut(s) 303
BtsCI GGATG 3 cut(s) 10, 323, 378
CciI TCATGA 1 cut(s) 334
CfoI GCGC 1 cut(s) 449
ClaI ATCGAT 1 cut(s) 303
Csp6I GTAC 1 cut(s) 19
CviAII CATG 3 cut(s) 335, 352, 371
CviJI RGCY 3 cut(s) 52, 340, 350
CviKI_1 RGCY 3 cut(s) 52, 340, 350
CviQI GTAC 1 cut(s) 19
DdeI CTNAG 3 cut(s) 44, 288, 480
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
Ecl136II GAGCTC 1 cut(s) 340
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 64
Eco32I GATATC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 340
EcoICRI GAGCTC 1 cut(s) 340
EcoRI GAATTC 1 cut(s) 206
EcoRV GATATC 1 cut(s) 223
EcoT38I GRGCYC 1 cut(s) 342
FaeI CATG 3 cut(s) 338, 355, 374
FaiI YATR 6 cut(s) 132, 336, 353, 372, 396, 441
FatI CATG 3 cut(s) 334, 351, 370
FokI GGATG 3 cut(s) 17, 330, 365
FriOI GRGCYC 1 cut(s) 342
FspBI CTAG 1 cut(s) 116
GlaI GCGC 1 cut(s) 448
HhaI GCGC 1 cut(s) 449
Hin1II CATG 3 cut(s) 338, 355, 374
Hin6I GCGC 1 cut(s) 447
HinP1I GCGC 1 cut(s) 447
HinfI GANTC 6 cut(s) 8, 92, 179, 250, 300, 405
Hpy188I TCNGA 3 cut(s) 30, 47, 429
Hpy188III TCNNGA 4 cut(s) 110, 164, 335, 402
HpyAV CCTTC 3 cut(s) 42, 271, 452
HpyCH4V TGCA 1 cut(s) 314
HpyF10VI GCNNNNNNNGC 1 cut(s) 469
HpyF3I CTNAG 3 cut(s) 44, 288, 480
Hsp92II CATG 3 cut(s) 338, 355, 374
HspAI GCGC 1 cut(s) 447
Kzo9I GATC 1 cut(s) 321
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 2 cut(s) 29, 300
MaeI CTAG 1 cut(s) 116
MaeIII GTNAC 2 cut(s) 89, 307
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 3 cut(s) 47, 50, 80
MhlI GDGCHC 2 cut(s) 342, 465
MluCI AATT 3 cut(s) 206, 397, 436
MlyI GAGTC 3 cut(s) 86, 244, 399
MnlI CCTC 2 cut(s) 53, 240
MroXI GAANNNNTTC 1 cut(s) 183
MseI TTAA 3 cut(s) 192, 200, 453
MslI CAYNNNNRTG 1 cut(s) 230
MspCI CTTAAG 1 cut(s) 452
MwoI GCNNNNNNNGC 1 cut(s) 469
NdeII GATC 1 cut(s) 321
NlaIII CATG 3 cut(s) 338, 355, 374
NlaIV GGNNCC 2 cut(s) 349, 464
NmuCI GTSAC 1 cut(s) 89
OliI CACNNNNGTG 1 cut(s) 230
PagI TCATGA 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 183
PfeI GAWTC 3 cut(s) 8, 179, 300
PleI GAGTC 3 cut(s) 86, 244, 399
PpsI GAGTC 3 cut(s) 86, 244, 399
Psp124BI GAGCTC 1 cut(s) 342
PspN4I GGNNCC 2 cut(s) 349, 464
PstI CTGCAG 1 cut(s) 316
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 230
SacI GAGCTC 1 cut(s) 342
SaqAI TTAA 3 cut(s) 192, 200, 453
Sau3AI GATC 1 cut(s) 321
SchI GAGTC 3 cut(s) 86, 244, 399
SduI GDGCHC 2 cut(s) 342, 465
SetI ASST 5 cut(s) 45, 117, 263, 332, 342
SfcI CTRYAG 1 cut(s) 312
SmiMI CAYNNNNRTG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
Sse9I AATT 3 cut(s) 206, 397, 436
SspMI CTAG 1 cut(s) 116
SstI GAGCTC 1 cut(s) 342
TaqI TCGA 4 cut(s) 66, 298, 303, 401
TasI AATT 3 cut(s) 206, 397, 436
TatI WGTACW 1 cut(s) 18
TfiI GAWTC 3 cut(s) 8, 179, 300
Tru1I TTAA 3 cut(s) 192, 200, 453
Tru9I TTAA 3 cut(s) 192, 200, 453
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 3 cut(s) 48, 323, 368
Vha464I CTTAAG 1 cut(s) 452
XapI RAATTY 1 cut(s) 206
XmnI GAANNNNTTC 1 cut(s) 183
XspI CTAG 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.