Rmu_sc0007418.1_g000034

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007418.1
OG0031250
Physical Location & Seq
Reverse (-)
128689 .. 129168
480 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007418.1_g000034.1.cds

Sequence Viewer

Length: 480 bp
atgacacgtcatatggatgattctctccaatatgagtgtatgaatgaaaaagacccaagaaggctgtgggtctcactcaaaaaaagatttggcaacatctgtgaatccctgcttcttgacctagaagtgagatggcataatctccgcttctgtgatttcaagtcagttcttgactacaactcggaagcatttcgtattaaatccttaatggaattttgtggtaaagagattacagatgcgatattgattgagaaaactctctctaccttcctcgtctctgcattgatggttgttaagaactatcgaatcgatgttactgcaggacggatcacaatgtttcatgagctcattggagctatgaatgtagctgaaaagcatgacaatatccttgtgaagaactataatttgagatccgtggaaacagagcatattctgaaatccaattattgtttcgcccttaagaaagggcgccaagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Retrotran_gag_2 zf-CCHC

Protein Analysis

159

Amino Acids

18.73

Weight (kDa)

8.25

Isoelectric Point (pI)

51.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031250)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003207.1_g000039 Rmu_sc0007418.1_g000034

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 468
AciI CCGC 1 cut(s) 145
AclWI GGATC 2 cut(s) 335, 405
AcsI RAATTY 1 cut(s) 212
AcyI GRCGYC 1 cut(s) 469
AflII CTTAAG 1 cut(s) 458
AflIII ACRYGT 1 cut(s) 5
AgsI TTSAA 1 cut(s) 160
AjiI CACGTC 1 cut(s) 8
AjuI GAANNNNNNNTTGG 2 cut(s) 434, 466
AluBI AGCT 3 cut(s) 346, 356, 368
AluI AGCT 3 cut(s) 346, 356, 368
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 2 cut(s) 76, 280
AlwI GGATC 2 cut(s) 335, 405
ApoI RAATTY 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 189
AspLEI GCGC 1 cut(s) 471
BanI GGYRCC 1 cut(s) 468
BanII GRGCYC 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 348
BccI CCATC 2 cut(s) 126, 280
BcgI CGANNNNNNTGC 2 cut(s) 299, 333
BcoDI GTCTC 2 cut(s) 76, 280
BfaI CTAG 1 cut(s) 122
BfmI CTRYAG 1 cut(s) 318
BfoI RGCGCY 1 cut(s) 472
BfrI CTTAAG 1 cut(s) 458
BmgBI CACGTC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 470
BmsI GCATC 1 cut(s) 226
Bsa29I ATCGAT 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 469
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 414
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 1 cut(s) 22
BshNI GGYRCC 1 cut(s) 468
BshVI ATCGAT 1 cut(s) 309
BsiHKAI GWGCWC 1 cut(s) 348
BsmAI GTCTC 2 cut(s) 76, 280
BsmBI CGTCTC 1 cut(s) 280
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 1 cut(s) 348
Bsp143I GATC 2 cut(s) 327, 410
BspACI CCGC 1 cut(s) 145
BspDI ATCGAT 1 cut(s) 309
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 1 cut(s) 470
BspMAI CTGCAG 1 cut(s) 322
BspPI GGATC 2 cut(s) 335, 405
BspT107I GGYRCC 1 cut(s) 468
BspTI CTTAAG 1 cut(s) 458
BspTNI GGTCTC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 2 cut(s) 327, 410
BssNI GRCGYC 1 cut(s) 469
BstACI GRCGYC 1 cut(s) 469
BstAFI CTTAAG 1 cut(s) 458
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 1 cut(s) 22
BstH2I RGCGCY 1 cut(s) 472
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 2 cut(s) 330, 413
BstMAI GTCTC 2 cut(s) 76, 280
BstMBI GATC 2 cut(s) 327, 410
BstSFI CTRYAG 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 410
BstYI RGATCY 1 cut(s) 410
Bsu15I ATCGAT 1 cut(s) 309
BsuTUI ATCGAT 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 414
BtrI CACGTC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 22
CciI TCATGA 1 cut(s) 340
CfoI GCGC 1 cut(s) 471
ClaI ATCGAT 1 cut(s) 309
CviAII CATG 2 cut(s) 341, 377
CviJI RGCY 4 cut(s) 64, 346, 356, 368
CviKI_1 RGCY 4 cut(s) 64, 346, 356, 368
DinI GGCGCC 1 cut(s) 470
DpnI GATC 2 cut(s) 329, 412
DpnII GATC 2 cut(s) 327, 410
Ecl136II GAGCTC 1 cut(s) 346
Eco24I GRGCYC 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 76
Eco53kI GAGCTC 1 cut(s) 346
EcoICRI GAGCTC 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 348
EgeI GGCGCC 1 cut(s) 470
EheI GGCGCC 1 cut(s) 470
Esp3I CGTCTC 1 cut(s) 280
FaeI CATG 2 cut(s) 344, 380
FatI CATG 2 cut(s) 340, 376
FauNDI CATATG 1 cut(s) 12
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 348
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 470
HaeII RGCGCY 1 cut(s) 472
HhaI GCGC 1 cut(s) 471
Hin1I GRCGYC 1 cut(s) 469
Hin1II CATG 2 cut(s) 344, 380
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HinfI GANTC 3 cut(s) 20, 104, 306
Hpy188I TCNGA 2 cut(s) 184, 435
Hpy188III TCNNGA 3 cut(s) 116, 170, 341
HpyAV CCTTC 2 cut(s) 54, 277
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 2 cut(s) 281, 320
HpySE526I ACGT 1 cut(s) 7
Hsp92I GRCGYC 1 cut(s) 469
Hsp92II CATG 2 cut(s) 344, 380
HspAI GCGC 1 cut(s) 469
KasI GGCGCC 1 cut(s) 468
Kzo9I GATC 2 cut(s) 327, 410
LmnI GCTCC 1 cut(s) 353
LpnPI CCDG 2 cut(s) 122, 306
LweI GCATC 1 cut(s) 226
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 313
MalI GATC 2 cut(s) 329, 412
MboI GATC 2 cut(s) 327, 410
MboII GAAGA 1 cut(s) 406
MflI RGATCY 1 cut(s) 410
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 3 cut(s) 212, 403, 442
Mly113I GGCGCC 1 cut(s) 469
MnlI CCTC 1 cut(s) 281
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 4 cut(s) 198, 206, 294, 459
MslI CAYNNNNRTG 1 cut(s) 15
MspCI CTTAAG 1 cut(s) 458
NarI GGCGCC 1 cut(s) 469
NdeI CATATG 1 cut(s) 12
NdeII GATC 2 cut(s) 327, 410
NlaIII CATG 2 cut(s) 344, 380
NlaIV GGNNCC 1 cut(s) 470
PagI TCATGA 1 cut(s) 340
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 3 cut(s) 20, 104, 306
PluTI GGCGCC 1 cut(s) 472
Psp124BI GAGCTC 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 470
PstI CTGCAG 1 cut(s) 322
PsuI RGATCY 1 cut(s) 410
RseI CAYNNNNRTG 1 cut(s) 15
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 4 cut(s) 198, 206, 294, 459
Sau3AI GATC 2 cut(s) 327, 410
SduI GDGCHC 1 cut(s) 348
SetI ASST 6 cut(s) 10, 123, 269, 348, 358, 370
SfaNI GCATC 1 cut(s) 226
SfcI CTRYAG 1 cut(s) 318
SfoI GGCGCC 1 cut(s) 470
SmiMI CAYNNNNRTG 1 cut(s) 15
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
Sse9I AATT 3 cut(s) 212, 403, 442
SsiI CCGC 1 cut(s) 145
SspDI GGCGCC 1 cut(s) 468
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 348
TaiI ACGT 1 cut(s) 10
TaqI TCGA 2 cut(s) 304, 309
TasI AATT 3 cut(s) 212, 403, 442
TfiI GAWTC 3 cut(s) 20, 104, 306
Tru1I TTAA 4 cut(s) 198, 206, 294, 459
Tru9I TTAA 4 cut(s) 198, 206, 294, 459
TspDTI ATGAA 4 cut(s) 56, 60, 329, 374
TspGWI ACGGA 2 cut(s) 340, 403
Vha464I CTTAAG 1 cut(s) 458
XapI RAATTY 1 cut(s) 212
XcmI CCANNNNNNNNNTGG 1 cut(s) 63
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.