Rmu_sc0003227.1_g000005

DnaJ domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003227.1
OG0031253
Physical Location & Seq
Forward (+)
14034 .. 15981
1948 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 468 bp
atggcccatggtgaacacgtgggcaatgcacccctaggtttagggctgggaattccaaaccgagatcctgaaaccgatcccatccgatccgagcagaaaccgatcaggtcgatcttgacggcggttcccgttgcggttctgtctcggattgagttgttgggattcgtggtgagccatgggtatgggttgacggagacggcgggatggtggtgtcctgcgcgtggcggttggtatgtcgaaacatttggtaaagataagaaaggacggttatcaccatcacagagatattgggatggctttgatgcaagggaacaatctgagaagagactccatcctgcgatgtaccttcttgctatgggatatagaactttagatcttgaagatgcaaaaagaaggaaacatacattcagggattttgtcgacagaaagctctttaaaatactcaattggtgcaaaagacttgtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

155

Amino Acids

17.74

Weight (kDa)

9.61

Isoelectric Point (pI)

46.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031253)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003227.1_g000005
rosa_samantha Rh4DG203800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 420
AccII CGCG 1 cut(s) 220
AciI CCGC 4 cut(s) 122, 134, 200, 225
AclWI GGATC 3 cut(s) 59, 71, 81
AcsI RAATTY 1 cut(s) 51
AcvI CACGTG 1 cut(s) 19
AfaI GTAC 1 cut(s) 344
AfiI CCNNNNNNNGG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 16
AgsI TTSAA 1 cut(s) 380
AluBI AGCT 1 cut(s) 430
AluI AGCT 1 cut(s) 430
Alw26I GTCTC 3 cut(s) 147, 188, 319
AlwI GGATC 3 cut(s) 59, 71, 81
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 51
AspA2I CCTAGG 1 cut(s) 34
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 23, 181, 264
AvrII CCTAGG 1 cut(s) 34
BarI GAAGNNNNNNTAC 2 cut(s) 385, 417
BbrPI CACGTG 1 cut(s) 19
BccI CCATC 5 cut(s) 89, 198, 283, 287, 339
BceAI ACGGC 2 cut(s) 135, 213
BcoDI GTCTC 3 cut(s) 147, 188, 319
BfaI CTAG 1 cut(s) 35
BglII AGATCT 1 cut(s) 373
BlnI CCTAGG 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 4
BmiI GGNNCC 1 cut(s) 126
BmsI GCATC 2 cut(s) 292, 373
BsaAI YACGTR 1 cut(s) 19
BsaJI CCNNGG 3 cut(s) 7, 34, 175
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse3DI GCAATG 1 cut(s) 31
BseDI CCNNGG 3 cut(s) 7, 34, 175
BseGI GGATG 4 cut(s) 81, 209, 298, 331
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 1 cut(s) 309
BseYI CCCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 220
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 1 cut(s) 221
BsmAI GTCTC 3 cut(s) 147, 188, 319
BsmBI CGTCTC 1 cut(s) 188
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 6 cut(s) 64, 76, 86, 102, 111, 373
Bsp19I CCATGG 2 cut(s) 7, 175
BspACI CCGC 4 cut(s) 122, 134, 200, 225
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 310
BspFNI CGCG 1 cut(s) 220
BspLI GGNNCC 1 cut(s) 126
BspPI GGATC 3 cut(s) 59, 71, 81
BsrDI GCAATG 1 cut(s) 31
BssECI CCNNGG 3 cut(s) 7, 34, 175
BssMI GATC 6 cut(s) 64, 76, 86, 102, 111, 373
BssT1I CCWWGG 3 cut(s) 7, 34, 175
Bst4CI ACNGT 1 cut(s) 267
Bst6I CTCTTC 1 cut(s) 317
BstBAI YACGTR 1 cut(s) 19
BstDEI CTNAG 1 cut(s) 318
BstDSI CCRYGG 2 cut(s) 7, 175
BstF5I GGATG 4 cut(s) 81, 209, 298, 331
BstFNI CGCG 1 cut(s) 220
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 6 cut(s) 67, 79, 89, 105, 114, 376
BstMAI GTCTC 3 cut(s) 147, 188, 319
BstMBI GATC 6 cut(s) 64, 76, 86, 102, 111, 373
BstUI CGCG 1 cut(s) 220
BstX2I RGATCY 2 cut(s) 64, 373
BstXI CCANNNNNNTGG 1 cut(s) 182
BstYI RGATCY 2 cut(s) 64, 373
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 2 cut(s) 7, 175
BtgZI GCGATG 1 cut(s) 353
BtsCI GGATG 4 cut(s) 81, 209, 298, 331
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 343
CviAII CATG 2 cut(s) 8, 176
CviJI RGCY 5 cut(s) 5, 46, 174, 297, 430
CviKI_1 RGCY 5 cut(s) 5, 46, 174, 297, 430
CviQI GTAC 1 cut(s) 343
DdeI CTNAG 1 cut(s) 318
DpnI GATC 6 cut(s) 66, 78, 88, 104, 113, 375
DpnII GATC 6 cut(s) 64, 76, 86, 102, 111, 373
DraI TTTAAA 1 cut(s) 436
Eam1104I CTCTTC 1 cut(s) 317
EarI CTCTTC 1 cut(s) 317
Eco130I CCWWGG 3 cut(s) 7, 34, 175
Eco72I CACGTG 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 51
EcoT14I CCWWGG 3 cut(s) 7, 34, 175
ErhI CCWWGG 3 cut(s) 7, 34, 175
Esp3I CGTCTC 1 cut(s) 188
FaeI CATG 2 cut(s) 11, 179
FaiI YATR 7 cut(s) 9, 177, 183, 234, 356, 363, 402
FatI CATG 2 cut(s) 7, 175
FauI CCCGC 1 cut(s) 193
FblI GTMKAC 1 cut(s) 420
FokI GGATG 4 cut(s) 68, 216, 305, 318
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 219
GsaI CCCAGC 1 cut(s) 50
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 220
Hin1II CATG 2 cut(s) 11, 179
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 2 cut(s) 189, 421
HindII GTYRAC 2 cut(s) 189, 421
HinfI GANTC 2 cut(s) 162, 327
HphI GGTGA 3 cut(s) 23, 181, 264
Hpy166II GTNNAC 3 cut(s) 14, 189, 421
Hpy188I TCNGA 4 cut(s) 86, 91, 147, 319
Hpy188III TCNNGA 3 cut(s) 68, 115, 377
Hpy8I GTNNAC 3 cut(s) 14, 189, 421
HpyAV CCTTC 2 cut(s) 356, 387
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 4 cut(s) 29, 305, 386, 453
HpyF3I CTNAG 1 cut(s) 318
HpySE526I ACGT 1 cut(s) 18
Hsp92II CATG 2 cut(s) 11, 179
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 6 cut(s) 64, 76, 86, 102, 111, 373
LpnPI CCDG 6 cut(s) 32, 81, 91, 228, 348, 394
LweI GCATC 2 cut(s) 292, 373
MaeI CTAG 1 cut(s) 35
MaeII ACGT 1 cut(s) 18
MalI GATC 6 cut(s) 66, 78, 88, 104, 113, 375
MboI GATC 6 cut(s) 64, 76, 86, 102, 111, 373
MboII GAAGA 2 cut(s) 334, 392
MfeI CAATTG 1 cut(s) 445
MflI RGATCY 2 cut(s) 64, 373
MluCI AATT 2 cut(s) 51, 445
MlyI GAGTC 1 cut(s) 321
MseI TTAA 2 cut(s) 435, 466
MslI CAYNNNNRTG 1 cut(s) 180
MunI CAATTG 1 cut(s) 445
MvnI CGCG 1 cut(s) 220
NcoI CCATGG 2 cut(s) 7, 175
NdeII GATC 6 cut(s) 64, 76, 86, 102, 111, 373
NlaIII CATG 2 cut(s) 11, 179
NlaIV GGNNCC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 162
PleI GAGTC 1 cut(s) 321
PmaCI CACGTG 1 cut(s) 19
PmlI CACGTG 1 cut(s) 19
PpsI GAGTC 1 cut(s) 321
Ppu21I YACGTR 1 cut(s) 19
PspCI CACGTG 1 cut(s) 19
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 126
PspPI GGNCC 1 cut(s) 4
PsuI RGATCY 2 cut(s) 64, 373
RsaI GTAC 1 cut(s) 344
RsaNI GTAC 1 cut(s) 343
RseI CAYNNNNRTG 1 cut(s) 180
SalI GTCGAC 1 cut(s) 419
SaqAI TTAA 2 cut(s) 435, 466
Sau3AI GATC 6 cut(s) 64, 76, 86, 102, 111, 373
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 321
SetI ASST 5 cut(s) 21, 40, 110, 348, 432
SfaNI GCATC 2 cut(s) 292, 373
SmiMI CAYNNNNRTG 1 cut(s) 180
Sse9I AATT 2 cut(s) 51, 445
SsiI CCGC 4 cut(s) 122, 134, 200, 225
SspMI CTAG 1 cut(s) 35
StyI CCWWGG 3 cut(s) 7, 34, 175
TaaI ACNGT 1 cut(s) 267
TaiI ACGT 1 cut(s) 21
TaqI TCGA 3 cut(s) 110, 237, 420
TasI AATT 2 cut(s) 51, 445
TfiI GAWTC 1 cut(s) 162
Tru1I TTAA 2 cut(s) 435, 466
Tru9I TTAA 2 cut(s) 435, 466
TspGWI ACGGA 1 cut(s) 206
XapI RAATTY 1 cut(s) 51
XmaJI CCTAGG 1 cut(s) 34
XmiI GTMKAC 1 cut(s) 420
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.