Rh4DG203800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0031253
Physical Location & Seq
Forward (+)
39650302 .. 39650484
183 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG203800.1

Sequence Viewer

Length: 183 bp
ATGACGGCGGTTCCCATGGTGGTTCTGTGTTGGATCGAGTTGCTGGGATTCGTGGTGAGCCATGGGTACGGGTTGACGGAGACGGCGAGGTGGTGGTGTCATGCGCGTGGAAGCCCGGGTGGAATAAGTTGGCGTCGCTTCGCCGCTCGAAAGCCCCAGCTTGCTCTTCATCTCCATCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

60

Amino Acids

6.78

Weight (kDa)

10.08

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031253)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003227.1_g000005
rosa_samantha Rh4DG203800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 146
AccII CGCG 1 cut(s) 106
AciI CCGC 2 cut(s) 8, 144
AclWI GGATC 1 cut(s) 41
AcyI GRCGYC 1 cut(s) 133
AfaI GTAC 1 cut(s) 68
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 1 cut(s) 41
Ama87I CYCGRG 1 cut(s) 115
AspLEI GCGC 1 cut(s) 106
AsuC2I CCSGG 2 cut(s) 116, 117
AsuHPI GGTGA 1 cut(s) 67
AvaI CYCGRG 1 cut(s) 115
BceAI ACGGC 2 cut(s) 21, 99
BcnI CCSGG 2 cut(s) 116, 117
BcoDI GTCTC 1 cut(s) 74
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
Bme1390I CCNGG 2 cut(s) 116, 117
BmeT110I CYCGRG 1 cut(s) 115
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 2 cut(s) 116, 117
BpuMI CCSGG 2 cut(s) 116, 117
BsaHI GRCGYC 1 cut(s) 133
BsaJI CCNNGG 3 cut(s) 15, 61, 115
BseDI CCNNGG 3 cut(s) 15, 61, 115
BseYI CCCAGC 2 cut(s) 43, 156
Bsh1236I CGCG 1 cut(s) 106
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 1 cut(s) 116
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
BsoBI CYCGRG 1 cut(s) 115
Bsp143I GATC 1 cut(s) 33
Bsp19I CCATGG 2 cut(s) 15, 61
BspACI CCGC 2 cut(s) 8, 144
BspFNI CGCG 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 1 cut(s) 41
BspQI GCTCTTC 1 cut(s) 171
BsrBI CCGCTC 1 cut(s) 146
BssECI CCNNGG 3 cut(s) 15, 61, 115
BssMI GATC 1 cut(s) 33
BssNI GRCGYC 1 cut(s) 133
BssT1I CCWWGG 2 cut(s) 15, 61
Bst6I CTCTTC 1 cut(s) 171
BstACI GRCGYC 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 162
BstDSI CCRYGG 2 cut(s) 15, 61
BstFNI CGCG 1 cut(s) 106
BstHHI GCGC 1 cut(s) 106
BstKTI GATC 1 cut(s) 36
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 1 cut(s) 33
BstSCI CCNGG 2 cut(s) 114, 115
BstUI CGCG 1 cut(s) 106
BtgI CCRYGG 2 cut(s) 15, 61
Cac8I GCNNGC 1 cut(s) 162
CfoI GCGC 1 cut(s) 106
Cfr9I CCCGGG 1 cut(s) 115
CseI GACGC 1 cut(s) 122
Csp6I GTAC 1 cut(s) 67
CviAII CATG 3 cut(s) 16, 62, 101
CviJI RGCY 4 cut(s) 60, 114, 154, 160
CviKI_1 RGCY 4 cut(s) 60, 114, 154, 160
CviQI GTAC 1 cut(s) 67
DpnI GATC 1 cut(s) 35
DpnII GATC 1 cut(s) 33
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco130I CCWWGG 2 cut(s) 15, 61
Eco88I CYCGRG 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 15, 61
ErhI CCWWGG 2 cut(s) 15, 61
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 3 cut(s) 19, 65, 104
FaiI YATR 3 cut(s) 17, 63, 102
FatI CATG 3 cut(s) 15, 61, 100
Fnu4HI GCNGC 1 cut(s) 144
Fsp4HI GCNGC 1 cut(s) 144
GlaI GCGC 1 cut(s) 105
GluI GCNGC 1 cut(s) 144
GsaI CCCAGC 2 cut(s) 47, 160
HapII CCGG 1 cut(s) 116
HgaI GACGC 1 cut(s) 122
HhaI GCGC 1 cut(s) 106
Hin1I GRCGYC 1 cut(s) 133
Hin1II CATG 3 cut(s) 19, 65, 104
Hin6I GCGC 1 cut(s) 104
HinP1I GCGC 1 cut(s) 104
HincII GTYRAC 1 cut(s) 75
HindII GTYRAC 1 cut(s) 75
HinfI GANTC 1 cut(s) 48
HpaII CCGG 1 cut(s) 116
HphI GGTGA 1 cut(s) 67
Hpy166II GTNNAC 1 cut(s) 75
Hpy8I GTNNAC 1 cut(s) 75
Hpy99I CGWCG 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 133
Hsp92II CATG 3 cut(s) 19, 65, 104
HspAI GCGC 1 cut(s) 104
Kzo9I GATC 1 cut(s) 33
LguI GCTCTTC 1 cut(s) 171
LpnPI CCDG 3 cut(s) 29, 129, 170
MalI GATC 1 cut(s) 35
MbiI CCGCTC 1 cut(s) 146
MboI GATC 1 cut(s) 33
MboII GAAGA 1 cut(s) 158
MmeI TCCRAC 1 cut(s) 11
MnlI CCTC 1 cut(s) 81
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 2 cut(s) 116, 117
MvnI CGCG 1 cut(s) 106
NciI CCSGG 2 cut(s) 116, 117
NcoI CCATGG 2 cut(s) 15, 61
NdeII GATC 1 cut(s) 33
NlaIII CATG 3 cut(s) 19, 65, 104
NlaIV GGNNCC 1 cut(s) 12
PciSI GCTCTTC 1 cut(s) 171
PcsI WCGNNNNNNNCGW 1 cut(s) 83
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 1 cut(s) 145
PspFI CCCAGC 2 cut(s) 43, 156
PspN4I GGNNCC 1 cut(s) 12
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 105
SapI GCTCTTC 1 cut(s) 171
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 1 cut(s) 33
ScrFI CCNGG 2 cut(s) 116, 117
SetI ASST 2 cut(s) 92, 162
SmaI CCCGGG 1 cut(s) 117
SmiMI CAYNNNNRTG 1 cut(s) 105
SsiI CCGC 2 cut(s) 8, 144
StyD4I CCNGG 2 cut(s) 114, 115
StyI CCWWGG 2 cut(s) 15, 61
TaqI TCGA 2 cut(s) 36, 148
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 1 cut(s) 48
TspDTI ATGAA 1 cut(s) 158
TspGWI ACGGA 1 cut(s) 92
TspMI CCCGGG 1 cut(s) 115
XmaI CCCGGG 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.