Rmu_sc0003271.1_g000004

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003271.1
OG0031260
Physical Location & Seq
Forward (+)
15092 .. 23156
8065 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1290 bp
atggcgcgaatcactgcagctcttgctgtgattgccttgtttgctgtatttccgagcatggaggcaacgcagtatgttgttggtgatgaccagggttggaattctgatgttgattactactcttggattgctggcaaaacttttcatgttggagattctttagttttcagttatacaccgggcgatcacaatgtagttgtagcagctaattctgatgtgtatgataagtgtgctactactccaaacttgggggtctggacaagtggcagtgacgtcttaaccttgcccagcacggtctccgccctaagtagcgactggttctccactctctgcggtctagtacctgcactccagtgccacttttttccagcgatcgctcaaccatgcccaactcctcgattatggaaactcgatgagaataagggggattgccaggcagatctgatcaagatctggaattggcgcacttgggatccgggtcttgatataaatctactgcctgaggttgtgaggcagatcatggaggggagtgttgagccgacccacgagtctgaccgtgcaatgttaatgggaacgacggtgaggtgtgtggacgggagaggcagcgacggtgaggctacagattgggtgcccttctgtggttgggtgcccaaatcagttttggggcccaagtccgtgttcaggcccaaatcaatctgggtgcccaaacacagcacagttttggggcctaattggagatgggcttggaagtggactgcactatgggctctatgttggactcgggctatctcatgggcccaattgatggactctaactctctaggatatcttatttgggatcctgaaggtttactcaaacagaatctgagtatgtttggcatcagtgatactattggatcttttagagtagtactaaaggtggattcaaactattctataagggcagagcatgaaacatcaaatgagttgacctatctctatgtaccattgtggacagttgaaccttcaacgccgcatcccagagaccccgacatcattatctcagacccgacgtcttctcccagattgactcgccggcagatccaaaggcttcaagccagacgaaacccgcccagatttgccagaatttcaaccccctcgtcccccatccccacaagcccacacgggcctcagccccgtctgcagcagtcccgcgcgctgcagcactttcggtttcacacccagcagccccttgcagcagcacgcactcccccagtccttcaccggcctcagatcccagcgtgcacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

429

Amino Acids

48.04

Weight (kDa)

7.15

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 33 - 97 7.9e-13 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031260)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003271.1_g000004 Rmu_sc0009588.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 547
AatII GACGTC 2 cut(s) 276, 1055
Acc36I ACCTGC 1 cut(s) 352
AccB1I GGYRCC 3 cut(s) 628, 646, 700
AccB7I CCANNNNNTGG 1 cut(s) 805
AccII CGCG 3 cut(s) 7, 1194, 1196
AciI CCGC 5 cut(s) 300, 333, 1013, 1109, 1192
AclWI GGATC 7 cut(s) 467, 480, 833, 846, 904, 1075, 1267
AcsI RAATTY 2 cut(s) 100, 1125
AcuI CTGAAG 1 cut(s) 864
AcyI GRCGYC 2 cut(s) 273, 1052
AfaI GTAC 3 cut(s) 342, 912, 984
AfiI CCNNNNNNNGG 4 cut(s) 248, 638, 681, 805
AgsI TTSAA 5 cut(s) 927, 1001, 1008, 1094, 1131
AhdI GACNNNNNGTC 1 cut(s) 1051
AjnI CCWGG 2 cut(s) 90, 432
AjuI GAANNNNNNNTTGG 2 cut(s) 662, 694
AleI CACNNNNGTG 1 cut(s) 352
AluBI AGCT 2 cut(s) 20, 206
AluI AGCT 2 cut(s) 20, 206
Alw21I GWGCWC 1 cut(s) 1286
Alw26I GTCTC 2 cut(s) 301, 1017
Alw44I GTGCAC 1 cut(s) 1282
AlwI GGATC 7 cut(s) 467, 480, 833, 846, 904, 1075, 1267
AlwNI CAGNNNCTG 1 cut(s) 865
Ama87I CYCGRG 1 cut(s) 780
AoxI GGCC 6 cut(s) 665, 683, 725, 795, 1166, 1265
ApaI GGGCCC 2 cut(s) 669, 799
ApaLI GTGCAC 1 cut(s) 1282
ApeKI GCWGC 9 cut(s) 17, 203, 603, 1183, 1198, 1201, 1225, 1235, 1238
ApoI RAATTY 2 cut(s) 100, 1125
AsiSI GCGATCGC 1 cut(s) 375
AspLEI GCGC 4 cut(s) 7, 465, 1196, 1198
AspS9I GGNCC 7 cut(s) 665, 666, 684, 725, 795, 796, 1166
AsuC2I CCSGG 2 cut(s) 180, 477
AsuHPI GGTGA 4 cut(s) 95, 592, 623, 1253
AvaI CYCGRG 1 cut(s) 780
AxyI CCTNAGG 1 cut(s) 501
BaeGI GKGCMC 6 cut(s) 633, 651, 669, 705, 799, 1286
BamHI GGATCC 2 cut(s) 472, 838
BanI GGYRCC 3 cut(s) 628, 646, 700
BanII GRGCYC 3 cut(s) 669, 769, 799
BauI CACGAG 1 cut(s) 545
BbsI GAAGAC 1 cut(s) 1047
Bbv12I GWGCWC 1 cut(s) 1286
BbvCI CCTCAGC 1 cut(s) 1170
BbvI GCAGC 9 cut(s) 29, 215, 615, 1185, 1195, 1213, 1237, 1247, 1250
BccI CCATC 3 cut(s) 732, 799, 1154
BcgI CGANNNNNNTGC 2 cut(s) 1190, 1224
BciT130I CCWGG 2 cut(s) 92, 434
BclI TGATCA 1 cut(s) 444
BcnI CCSGG 2 cut(s) 180, 477
BcoDI GTCTC 2 cut(s) 301, 1017
BfaI CTAG 3 cut(s) 338, 821, 1288
BfmI CTRYAG 4 cut(s) 15, 618, 1181, 1199
BfuAI ACCTGC 1 cut(s) 352
BglII AGATCT 2 cut(s) 439, 450
BmcAI AGTACT 1 cut(s) 912
Bme1390I CCNGG 4 cut(s) 92, 180, 434, 477
BmeRI GACNNNNNGTC 1 cut(s) 1051
BmeT110I CYCGRG 1 cut(s) 780
BmgT120I GGNCC 7 cut(s) 665, 666, 684, 725, 795, 796, 1166
BmiI GGNNCC 9 cut(s) 474, 630, 648, 666, 667, 702, 726, 797, 840
BmrFI CCNGG 4 cut(s) 92, 180, 434, 477
BmrI ACTGGG 1 cut(s) 1247
BmsI GCATC 2 cut(s) 888, 1024
BmuI ACTGGG 1 cut(s) 1247
BpiI GAAGAC 1 cut(s) 1047
BpmI CTGGAG 1 cut(s) 335
Bpu10I CCTNAGC 1 cut(s) 1170
BpuMI CCSGG 2 cut(s) 180, 477
BsaBI GATNNNNATC 2 cut(s) 449, 489
BsaHI GRCGYC 2 cut(s) 273, 1052
BsaI GGTCTC 2 cut(s) 301, 1017
BsaJI CCNNGG 1 cut(s) 91
BsaXI ACNNNNNCTCC 6 cut(s) 305, 333, 335, 363, 1042, 1072
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 638, 681, 805
Bse118I RCCGGY 2 cut(s) 1074, 1263
Bse1I ACTGG 3 cut(s) 320, 352, 1253
Bse21I CCTNAGG 1 cut(s) 501
Bse3DI GCAATG 1 cut(s) 567
Bse8I GATNNNNATC 2 cut(s) 449, 489
BseBI CCWGG 2 cut(s) 92, 434
BseDI CCNNGG 1 cut(s) 91
BseGI GGATG 2 cut(s) 1015, 1146
BseJI GATNNNNATC 2 cut(s) 449, 489
BseLI CCNNNNNNNGG 4 cut(s) 248, 638, 681, 805
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 5 cut(s) 492, 857, 1056, 1184, 1283
BseNI ACTGG 3 cut(s) 320, 352, 1253
BsePI GCGCGC 1 cut(s) 1194
BseRI GAGGAG 1 cut(s) 384
BseSI GKGCMC 6 cut(s) 633, 651, 669, 705, 799, 1286
BseXI GCAGC 9 cut(s) 29, 215, 615, 1185, 1195, 1213, 1237, 1247, 1250
BseYI CCCAGC 3 cut(s) 287, 1221, 1276
BsgI GTGCAG 2 cut(s) 330, 741
Bsh1236I CGCG 3 cut(s) 7, 1194, 1196
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 6 cut(s) 667, 685, 727, 797, 1168, 1267
BshNI GGYRCC 3 cut(s) 628, 646, 700
BsiEI CGRYCG 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 1286
BsiHKCI CYCGRG 1 cut(s) 780
BsiSI CCGG 4 cut(s) 179, 476, 1075, 1264
BslFI GGGAC 2 cut(s) 1126, 1174
BslI CCNNNNNNNGG 4 cut(s) 248, 638, 681, 805
BsmAI GTCTC 2 cut(s) 301, 1017
BsmFI GGGAC 2 cut(s) 1126, 1174
BsnI GGCC 6 cut(s) 667, 685, 727, 797, 1168, 1267
Bso31I GGTCTC 2 cut(s) 301, 1017
BsoBI CYCGRG 1 cut(s) 780
Bsp120I GGGCCC 2 cut(s) 665, 795
Bsp1286I GDGCHC 7 cut(s) 633, 651, 669, 705, 769, 799, 1286
BspACI CCGC 5 cut(s) 300, 333, 1013, 1109, 1192
BspANI GGCC 6 cut(s) 667, 685, 727, 797, 1168, 1267
BspCNI CTCAG 5 cut(s) 493, 858, 1055, 1183, 1282
BspFNI CGCG 3 cut(s) 7, 1194, 1196
BspLI GGNNCC 9 cut(s) 474, 630, 648, 666, 667, 702, 726, 797, 840
BspMAI CTGCAG 3 cut(s) 19, 1185, 1203
BspMI ACCTGC 1 cut(s) 352
BspPI GGATC 7 cut(s) 467, 480, 833, 846, 904, 1075, 1267
BspT107I GGYRCC 3 cut(s) 628, 646, 700
BspTNI GGTCTC 2 cut(s) 301, 1017
BsrDI GCAATG 1 cut(s) 567
BsrFI RCCGGY 2 cut(s) 1074, 1263
BsrI ACTGG 3 cut(s) 320, 352, 1253
BssAI RCCGGY 2 cut(s) 1074, 1263
BssECI CCNNGG 1 cut(s) 91
BssHII GCGCGC 1 cut(s) 1194
BssNI GRCGYC 2 cut(s) 273, 1052
BssSI CACGAG 1 cut(s) 545
Bst2BI CACGAG 1 cut(s) 545
Bst2UI CCWGG 2 cut(s) 92, 434
Bst4CI ACNGT 6 cut(s) 295, 557, 580, 611, 718, 997
BstACI GRCGYC 2 cut(s) 273, 1052
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 5 cut(s) 133, 1076, 1196, 1243, 1282
BstDEI CTNAG 6 cut(s) 305, 501, 866, 1042, 1170, 1269
BstF5I GGATG 2 cut(s) 1015, 1146
BstFNI CGCG 3 cut(s) 7, 1194, 1196
BstHHI GCGC 4 cut(s) 7, 465, 1196, 1198
BstMAI GTCTC 2 cut(s) 301, 1017
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 5 cut(s) 23, 32, 41, 764, 1180
BstNI CCWGG 2 cut(s) 92, 434
BstSCI CCNGG 4 cut(s) 90, 178, 432, 475
BstSFI CTRYAG 4 cut(s) 15, 618, 1181, 1199
BstSLI GKGCMC 6 cut(s) 633, 651, 669, 705, 799, 1286
BstUI CGCG 3 cut(s) 7, 1194, 1196
BstV1I GCAGC 9 cut(s) 29, 215, 615, 1185, 1195, 1213, 1237, 1247, 1250
BstV2I GAAGAC 1 cut(s) 1047
BstX2I RGATCY 7 cut(s) 439, 450, 472, 838, 896, 1080, 1272
BstYI RGATCY 7 cut(s) 439, 450, 472, 838, 896, 1080, 1272
Bsu36I CCTNAGG 1 cut(s) 501
BsuRI GGCC 6 cut(s) 667, 685, 727, 797, 1168, 1267
BtsCI GGATG 2 cut(s) 1015, 1146
BtsI GCAGTG 2 cut(s) 12, 274
BtsIMutI CAGTG 4 cut(s) 12, 274, 359, 889
BveI ACCTGC 1 cut(s) 352
Cac8I GCNNGC 5 cut(s) 133, 1076, 1196, 1243, 1282
CaiI CAGNNNCTG 1 cut(s) 865
CfoI GCGC 4 cut(s) 7, 465, 1196, 1198
Cfr10I RCCGGY 2 cut(s) 1074, 1263
Cfr13I GGNCC 7 cut(s) 665, 666, 684, 725, 795, 796, 1166
Csp6I GTAC 3 cut(s) 341, 911, 983
CviAII CATG 6 cut(s) 58, 146, 384, 520, 792, 950
CviQI GTAC 3 cut(s) 341, 911, 983
DdeI CTNAG 6 cut(s) 305, 501, 866, 1042, 1170, 1269
DrdI GACNNNNNNGTC 1 cut(s) 547
DriI GACNNNNNGTC 1 cut(s) 1051
DseDI GACNNNNNNGTC 1 cut(s) 547
Eam1105I GACNNNNNGTC 1 cut(s) 1051
EciI GGCGGA 1 cut(s) 289
Eco24I GRGCYC 3 cut(s) 669, 769, 799
Eco31I GGTCTC 2 cut(s) 301, 1017
Eco32I GATATC 1 cut(s) 827
Eco57I CTGAAG 1 cut(s) 864
Eco81I CCTNAGG 1 cut(s) 501
Eco88I CYCGRG 1 cut(s) 780
EcoO109I RGGNCCY 2 cut(s) 665, 725
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 90, 432
EcoRV GATATC 1 cut(s) 827
EcoT38I GRGCYC 3 cut(s) 669, 769, 799
FaeI CATG 6 cut(s) 61, 149, 387, 523, 795, 953
FaqI GGGAC 2 cut(s) 1126, 1174
FatI CATG 6 cut(s) 57, 145, 383, 519, 791, 949
FauI CCCGC 2 cut(s) 1116, 1199
FbaI TGATCA 1 cut(s) 444
FokI GGATG 2 cut(s) 1002, 1133
FriOI GRGCYC 3 cut(s) 669, 769, 799
FspBI CTAG 3 cut(s) 338, 821, 1288
GlaI GCGC 4 cut(s) 6, 464, 1195, 1197
GsaI CCCAGC 3 cut(s) 291, 1225, 1280
GsuI CTGGAG 1 cut(s) 335
HaeIII GGCC 6 cut(s) 667, 685, 727, 797, 1168, 1267
HapII CCGG 4 cut(s) 179, 476, 1075, 1264
HhaI GCGC 4 cut(s) 7, 465, 1196, 1198
Hin1I GRCGYC 2 cut(s) 273, 1052
Hin1II CATG 6 cut(s) 61, 149, 387, 523, 795, 953
Hin6I GCGC 4 cut(s) 5, 463, 1194, 1196
HinP1I GCGC 4 cut(s) 5, 463, 1194, 1196
HincII GTYRAC 1 cut(s) 969
HindII GTYRAC 1 cut(s) 969
HinfI GANTC 8 cut(s) 9, 155, 548, 778, 809, 862, 923, 1069
HpaII CCGG 4 cut(s) 179, 476, 1075, 1264
HphI GGTGA 4 cut(s) 95, 592, 623, 1253
Hpy166II GTNNAC 6 cut(s) 592, 753, 851, 969, 993, 1284
Hpy188I TCNGA 8 cut(s) 54, 106, 214, 444, 553, 867, 1045, 1272
Hpy188III TCNNGA 5 cut(s) 256, 448, 454, 482, 842
Hpy8I GTNNAC 6 cut(s) 592, 753, 851, 969, 993, 1284
Hpy99I CGWCG 3 cut(s) 580, 611, 1054
HpyAV CCTTC 4 cut(s) 643, 839, 1014, 1268
HpyCH4III ACNGT 6 cut(s) 295, 557, 580, 611, 718, 997
HpyCH4IV ACGT 2 cut(s) 273, 1052
HpyCH4V TGCA 8 cut(s) 17, 347, 560, 758, 1183, 1201, 1235, 1284
HpyF10VI GCNNNNNNNGC 5 cut(s) 23, 32, 41, 764, 1180
HpyF3I CTNAG 6 cut(s) 305, 501, 866, 1042, 1170, 1269
HpySE526I ACGT 2 cut(s) 273, 1052
Hsp92I GRCGYC 2 cut(s) 273, 1052
Hsp92II CATG 6 cut(s) 61, 149, 387, 523, 795, 953
HspAI GCGC 4 cut(s) 5, 463, 1194, 1196
KroI GCCGGC 1 cut(s) 1074
KroNI GCCGGC 1 cut(s) 1076
Ksp22I TGATCA 1 cut(s) 444
Lsp1109I GCAGC 9 cut(s) 29, 215, 615, 1185, 1195, 1213, 1237, 1247, 1250
LweI GCATC 2 cut(s) 888, 1024
MaeI CTAG 3 cut(s) 338, 821, 1288
MaeII ACGT 2 cut(s) 273, 1052
MaeIII GTNAC 1 cut(s) 269
MboII GAAGA 1 cut(s) 1047
MfeI CAATTG 1 cut(s) 800
MflI RGATCY 7 cut(s) 439, 450, 472, 838, 896, 1080, 1272
MhlI GDGCHC 7 cut(s) 633, 651, 669, 705, 769, 799, 1286
MluCI AATT 6 cut(s) 100, 208, 457, 730, 800, 1125
MlyI GAGTC 4 cut(s) 557, 772, 803, 1063
MmeI TCCRAC 3 cut(s) 77, 130, 755
MroNI GCCGGC 1 cut(s) 1074
MseI TTAA 2 cut(s) 278, 566
MslI CAYNNNNRTG 1 cut(s) 352
MspI CCGG 4 cut(s) 179, 476, 1075, 1264
MspR9I CCNGG 4 cut(s) 92, 180, 434, 477
MunI CAATTG 1 cut(s) 800
MvaI CCWGG 2 cut(s) 92, 434
MvnI CGCG 3 cut(s) 7, 1194, 1196
MwoI GCNNNNNNNGC 5 cut(s) 23, 32, 41, 764, 1180
NaeI GCCGGC 1 cut(s) 1076
NciI CCSGG 2 cut(s) 180, 477
NgoMIV GCCGGC 1 cut(s) 1074
NlaIII CATG 6 cut(s) 61, 149, 387, 523, 795, 953
NlaIV GGNNCC 9 cut(s) 474, 630, 648, 666, 667, 702, 726, 797, 840
NmuCI GTSAC 1 cut(s) 269
OliI CACNNNNGTG 1 cut(s) 352
PauI GCGCGC 1 cut(s) 1194
PdiI GCCGGC 1 cut(s) 1076
PfeI GAWTC 4 cut(s) 9, 155, 862, 923
PflMI CCANNNNNTGG 1 cut(s) 805
Ple19I CGATCG 1 cut(s) 375
PleI GAGTC 4 cut(s) 556, 772, 803, 1063
PpsI GAGTC 4 cut(s) 556, 772, 803, 1063
Psp6I CCWGG 2 cut(s) 90, 432
PspFI CCCAGC 3 cut(s) 287, 1221, 1276
PspGI CCWGG 2 cut(s) 90, 432
PspN4I GGNNCC 9 cut(s) 474, 630, 648, 666, 667, 702, 726, 797, 840
PspOMI GGGCCC 2 cut(s) 665, 795
PspPI GGNCC 7 cut(s) 665, 666, 684, 725, 795, 796, 1166
PstI CTGCAG 3 cut(s) 19, 1185, 1203
PstNI CAGNNNCTG 1 cut(s) 865
PsuI RGATCY 7 cut(s) 439, 450, 472, 838, 896, 1080, 1272
PteI GCGCGC 1 cut(s) 1194
PvuI CGATCG 1 cut(s) 375
RgaI GCGATCGC 1 cut(s) 375
RsaI GTAC 3 cut(s) 342, 912, 984
RsaNI GTAC 3 cut(s) 341, 911, 983
RseI CAYNNNNRTG 1 cut(s) 352
SaqAI TTAA 2 cut(s) 278, 566
Sau96I GGNCC 7 cut(s) 665, 666, 684, 725, 795, 796, 1166
ScaI AGTACT 1 cut(s) 912
SchI GAGTC 4 cut(s) 557, 772, 803, 1063
ScrFI CCNGG 4 cut(s) 92, 180, 434, 477
SduI GDGCHC 7 cut(s) 633, 651, 669, 705, 769, 799, 1286
SfaAI GCGATCGC 1 cut(s) 375
SfaNI GCATC 2 cut(s) 888, 1024
SfcI CTRYAG 4 cut(s) 15, 618, 1181, 1199
SgfI GCGATCGC 1 cut(s) 375
SmiMI CAYNNNNRTG 1 cut(s) 352
Sse9I AATT 6 cut(s) 100, 208, 457, 730, 800, 1125
SsiI CCGC 5 cut(s) 300, 333, 1013, 1109, 1192
SspMI CTAG 3 cut(s) 338, 821, 1288
StyD4I CCNGG 4 cut(s) 90, 178, 432, 475
TaaI ACNGT 6 cut(s) 295, 557, 580, 611, 718, 997
TaiI ACGT 2 cut(s) 276, 1055
TaqI TCGA 2 cut(s) 397, 411
TasI AATT 6 cut(s) 100, 208, 457, 730, 800, 1125
TatI WGTACW 1 cut(s) 910
TauI GCSGC 1 cut(s) 1015
TfiI GAWTC 4 cut(s) 9, 155, 862, 923
Tru1I TTAA 2 cut(s) 278, 566
Tru9I TTAA 2 cut(s) 278, 566
TscAI CASTG 4 cut(s) 19, 274, 359, 889
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 9 cut(s) 17, 203, 603, 1183, 1198, 1201, 1225, 1235, 1238
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 2 cut(s) 134, 966
TspGWI ACGGA 1 cut(s) 664
TspRI CASTG 4 cut(s) 19, 274, 359, 889
Van91I CCANNNNNTGG 1 cut(s) 805
VneI GTGCAC 1 cut(s) 1282
XapI RAATTY 2 cut(s) 100, 1125
XcmI CCANNNNNNNNNTGG 1 cut(s) 658
XspI CTAG 3 cut(s) 338, 821, 1288
ZraI GACGTC 2 cut(s) 274, 1053
ZrmI AGTACT 1 cut(s) 912
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.