Rmu_sc0009588.1_g000001

Basic blue protein-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009588.1
OG0031260
Physical Location & Seq
Reverse (-)
3446 .. 6691
3246 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009588.1_g000001.1.cds

Sequence Viewer

Length: 672 bp
atggcgcgaatcactgcagctcttgctgtgattgccttgtttgctgtatttccgagcatggaggcaacgcagtatgttgttggtgatgaccagggttggaattctgatgttgattactactcttggattgctggcaaaacttttcatgttggagattctttagttttcagttatacaccgggcgatcacaatgtagttgtagcagctaattctgatgtgtatgataagtgtgctactactccaaacttgggggtctggacaagtggcagtgacgtcttaaccttgcccagcacggtacctgcactccagtgccacttttttccagcgatcgctcaaccatgcccaactcctcgattatggaaactcgatgagaataagggggattgccaggcagatctgatcgagatctggaattggcgcacttgggatccggtgataggcggtgtgcaacgtcttgccggctcagtgagaagattgtcgactttgacaatggaatggcaggccggtcttgatataaatctactgcctgaggttgtgaggcagatcatggaggggagtgttgagccgacccacgagtctgaccgtgcaatgttaatgggaacgacggtgaggtgtgtggacgggagaggcagcgacggtgaggctacagattgggtacccttctgtggttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cu_bind_like

Protein Analysis

223

Amino Acids

24.43

Weight (kDa)

4.49

Isoelectric Point (pI)

30.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031260)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003271.1_g000004 Rmu_sc0009588.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 574
AatII GACGTC 1 cut(s) 276
Acc36I ACCTGC 1 cut(s) 307
Acc65I GGTACC 2 cut(s) 295, 655
AccB1I GGYRCC 2 cut(s) 295, 655
AccI GTMKAC 1 cut(s) 479
AccII CGCG 1 cut(s) 7
AciI CCGC 1 cut(s) 441
AclWI GGATC 2 cut(s) 422, 435
AcsI RAATTY 1 cut(s) 100
AcyI GRCGYC 1 cut(s) 273
AfaI GTAC 2 cut(s) 297, 657
AfiI CCNNNNNNNGG 3 cut(s) 248, 437, 665
AjnI CCWGG 2 cut(s) 90, 387
AleI CACNNNNGTG 1 cut(s) 307
AluBI AGCT 2 cut(s) 20, 206
AluI AGCT 2 cut(s) 20, 206
AlwI GGATC 2 cut(s) 422, 435
AoxI GGCC 1 cut(s) 501
ApeKI GCWGC 3 cut(s) 17, 203, 630
ApoI RAATTY 1 cut(s) 100
AsiSI GCGATCGC 1 cut(s) 330
Asp718I GGTACC 2 cut(s) 295, 655
AspLEI GCGC 2 cut(s) 7, 420
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 4 cut(s) 95, 445, 619, 650
AxyI CCTNAGG 1 cut(s) 528
BamHI GGATCC 1 cut(s) 427
BanI GGYRCC 2 cut(s) 295, 655
BauI CACGAG 1 cut(s) 572
BbvI GCAGC 3 cut(s) 29, 215, 642
BciT130I CCWGG 2 cut(s) 92, 389
BcnI CCSGG 1 cut(s) 180
BfmI CTRYAG 2 cut(s) 15, 645
BfuAI ACCTGC 1 cut(s) 307
BglII AGATCT 2 cut(s) 394, 405
BisI GCNGC 3 cut(s) 18, 204, 631
BlsI GCNGC 3 cut(s) 19, 205, 632
Bme1390I CCNGG 3 cut(s) 92, 180, 389
BmiI GGNNCC 3 cut(s) 297, 429, 657
BmrFI CCNGG 3 cut(s) 92, 180, 389
BpmI CTGGAG 1 cut(s) 290
BpuMI CCSGG 1 cut(s) 180
BsaBI GATNNNNATC 2 cut(s) 404, 516
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 430
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 3 cut(s) 248, 437, 665
Bse118I RCCGGY 2 cut(s) 458, 503
Bse1I ACTGG 1 cut(s) 307
Bse21I CCTNAGG 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 594
Bse8I GATNNNNATC 2 cut(s) 404, 516
BseBI CCWGG 2 cut(s) 92, 389
BseDI CCNNGG 1 cut(s) 91
BseJI GATNNNNATC 2 cut(s) 404, 516
BseLI CCNNNNNNNGG 3 cut(s) 248, 437, 665
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 2 cut(s) 477, 519
BseNI ACTGG 1 cut(s) 307
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 3 cut(s) 29, 215, 642
BseYI CCCAGC 1 cut(s) 287
BsgI GTGCAG 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 7
Bsh1285I CGRYCG 1 cut(s) 330
BshFI GGCC 1 cut(s) 503
BshNI GGYRCC 2 cut(s) 295, 655
BsiEI CGRYCG 1 cut(s) 330
BsiSI CCGG 4 cut(s) 179, 431, 459, 504
BslI CCNNNNNNNGG 3 cut(s) 248, 437, 665
BsnI GGCC 1 cut(s) 503
Bsp143I GATC 7 cut(s) 184, 327, 394, 399, 405, 427, 543
BspACI CCGC 1 cut(s) 441
BspANI GGCC 1 cut(s) 503
BspCNI CTCAG 2 cut(s) 476, 520
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 3 cut(s) 297, 429, 657
BspMAI CTGCAG 1 cut(s) 19
BspMI ACCTGC 1 cut(s) 307
BspPI GGATC 2 cut(s) 422, 435
BspT107I GGYRCC 2 cut(s) 295, 655
BsrDI GCAATG 1 cut(s) 594
BsrFI RCCGGY 2 cut(s) 458, 503
BsrI ACTGG 1 cut(s) 307
BssAI RCCGGY 2 cut(s) 458, 503
BssECI CCNNGG 1 cut(s) 91
BssMI GATC 7 cut(s) 184, 327, 394, 399, 405, 427, 543
BssNI GRCGYC 1 cut(s) 273
BssSI CACGAG 1 cut(s) 572
Bst2BI CACGAG 1 cut(s) 572
Bst2UI CCWGG 2 cut(s) 92, 389
Bst4CI ACNGT 4 cut(s) 295, 584, 607, 638
BstACI GRCGYC 1 cut(s) 273
BstAPI GCANNNNNTGC 1 cut(s) 23
BstC8I GCNNGC 3 cut(s) 133, 460, 501
BstDEI CTNAG 2 cut(s) 463, 528
BstFNI CGCG 1 cut(s) 7
BstHHI GCGC 2 cut(s) 7, 420
BstKTI GATC 7 cut(s) 187, 330, 397, 402, 408, 430, 546
BstMBI GATC 7 cut(s) 184, 327, 394, 399, 405, 427, 543
BstMCI CGRYCG 1 cut(s) 330
BstMWI GCNNNNNNNGC 3 cut(s) 23, 32, 41
BstNI CCWGG 2 cut(s) 92, 389
BstSCI CCNGG 3 cut(s) 90, 178, 387
BstSFI CTRYAG 2 cut(s) 15, 645
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 3 cut(s) 29, 215, 642
BstX2I RGATCY 3 cut(s) 394, 405, 427
BstYI RGATCY 3 cut(s) 394, 405, 427
Bsu36I CCTNAGG 1 cut(s) 528
BsuRI GGCC 1 cut(s) 503
BtsI GCAGTG 2 cut(s) 12, 274
BtsIMutI CAGTG 4 cut(s) 12, 274, 314, 471
BveI ACCTGC 1 cut(s) 307
Cac8I GCNNGC 3 cut(s) 133, 460, 501
CfoI GCGC 2 cut(s) 7, 420
Cfr10I RCCGGY 2 cut(s) 458, 503
Csp6I GTAC 2 cut(s) 296, 656
CviAII CATG 4 cut(s) 58, 146, 339, 547
CviJI RGCY 6 cut(s) 20, 206, 462, 503, 565, 644
CviKI_1 RGCY 6 cut(s) 20, 206, 462, 503, 565, 644
CviQI GTAC 2 cut(s) 296, 656
DdeI CTNAG 2 cut(s) 463, 528
DpnI GATC 7 cut(s) 186, 329, 396, 401, 407, 429, 545
DpnII GATC 7 cut(s) 184, 327, 394, 399, 405, 427, 543
DrdI GACNNNNNNGTC 1 cut(s) 574
DseDI GACNNNNNNGTC 1 cut(s) 574
Eco81I CCTNAGG 1 cut(s) 528
EcoRI GAATTC 1 cut(s) 100
EcoRII CCWGG 2 cut(s) 90, 387
FaeI CATG 4 cut(s) 61, 149, 342, 550
FaiI YATR 9 cut(s) 59, 75, 147, 174, 222, 340, 358, 515, 548
FatI CATG 4 cut(s) 57, 145, 338, 546
FblI GTMKAC 1 cut(s) 479
Fnu4HI GCNGC 3 cut(s) 18, 204, 631
Fsp4HI GCNGC 3 cut(s) 18, 204, 631
GlaI GCGC 2 cut(s) 6, 419
GluI GCNGC 3 cut(s) 18, 204, 631
GsaI CCCAGC 1 cut(s) 291
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 1 cut(s) 503
HapII CCGG 4 cut(s) 179, 431, 459, 504
HhaI GCGC 2 cut(s) 7, 420
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 4 cut(s) 61, 149, 342, 550
Hin6I GCGC 2 cut(s) 5, 418
HinP1I GCGC 2 cut(s) 5, 418
HincII GTYRAC 1 cut(s) 480
HindII GTYRAC 1 cut(s) 480
HinfI GANTC 3 cut(s) 9, 155, 575
HpaII CCGG 4 cut(s) 179, 431, 459, 504
HphI GGTGA 4 cut(s) 95, 445, 619, 650
Hpy166II GTNNAC 2 cut(s) 480, 619
Hpy188I TCNGA 5 cut(s) 54, 106, 214, 399, 580
Hpy188III TCNNGA 4 cut(s) 256, 403, 409, 509
Hpy8I GTNNAC 2 cut(s) 480, 619
Hpy99I CGWCG 2 cut(s) 607, 638
HpyAV CCTTC 1 cut(s) 670
HpyCH4III ACNGT 4 cut(s) 295, 584, 607, 638
HpyCH4IV ACGT 2 cut(s) 273, 451
HpyCH4V TGCA 4 cut(s) 17, 302, 448, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 23, 32, 41
HpyF3I CTNAG 2 cut(s) 463, 528
HpySE526I ACGT 2 cut(s) 273, 451
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 4 cut(s) 61, 149, 342, 550
HspAI GCGC 2 cut(s) 5, 418
KpnI GGTACC 2 cut(s) 299, 659
KroI GCCGGC 1 cut(s) 458
KroNI GCCGGC 1 cut(s) 460
Kzo9I GATC 7 cut(s) 184, 327, 394, 399, 405, 427, 543
Lsp1109I GCAGC 3 cut(s) 29, 215, 642
MaeII ACGT 2 cut(s) 273, 451
MaeIII GTNAC 1 cut(s) 269
MalI GATC 7 cut(s) 186, 329, 396, 401, 407, 429, 545
MboI GATC 7 cut(s) 184, 327, 394, 399, 405, 427, 543
MboII GAAGA 1 cut(s) 483
MflI RGATCY 3 cut(s) 394, 405, 427
MluCI AATT 3 cut(s) 100, 208, 412
MlyI GAGTC 1 cut(s) 584
MmeI TCCRAC 2 cut(s) 77, 130
MnlI CCTC 8 cut(s) 55, 360, 523, 531, 544, 603, 620, 634
MroNI GCCGGC 1 cut(s) 458
MseI TTAA 2 cut(s) 278, 593
MslI CAYNNNNRTG 1 cut(s) 307
MspI CCGG 4 cut(s) 179, 431, 459, 504
MspR9I CCNGG 3 cut(s) 92, 180, 389
MvaI CCWGG 2 cut(s) 92, 389
MvnI CGCG 1 cut(s) 7
MwoI GCNNNNNNNGC 3 cut(s) 23, 32, 41
NaeI GCCGGC 1 cut(s) 460
NciI CCSGG 1 cut(s) 180
NdeII GATC 7 cut(s) 184, 327, 394, 399, 405, 427, 543
NgoMIV GCCGGC 1 cut(s) 458
NlaIII CATG 4 cut(s) 61, 149, 342, 550
NlaIV GGNNCC 3 cut(s) 297, 429, 657
NmuCI GTSAC 1 cut(s) 269
OliI CACNNNNGTG 1 cut(s) 307
PdiI GCCGGC 1 cut(s) 460
PfeI GAWTC 2 cut(s) 9, 155
PkrI GCNGC 3 cut(s) 19, 205, 632
Ple19I CGATCG 1 cut(s) 330
PleI GAGTC 1 cut(s) 583
PpsI GAGTC 1 cut(s) 583
Psp6I CCWGG 2 cut(s) 90, 387
PspFI CCCAGC 1 cut(s) 287
PspGI CCWGG 2 cut(s) 90, 387
PspN4I GGNNCC 3 cut(s) 297, 429, 657
PstI CTGCAG 1 cut(s) 19
PsuI RGATCY 3 cut(s) 394, 405, 427
PvuI CGATCG 1 cut(s) 330
RgaI GCGATCGC 1 cut(s) 330
RsaI GTAC 2 cut(s) 297, 657
RsaNI GTAC 2 cut(s) 296, 656
RseI CAYNNNNRTG 1 cut(s) 307
SalI GTCGAC 1 cut(s) 478
SaqAI TTAA 2 cut(s) 278, 593
SatI GCNGC 3 cut(s) 18, 204, 631
Sau3AI GATC 7 cut(s) 184, 327, 394, 399, 405, 427, 543
SchI GAGTC 1 cut(s) 584
ScrFI CCNGG 3 cut(s) 92, 180, 389
SetI ASST 8 cut(s) 22, 208, 276, 284, 301, 454, 534, 614
SfaAI GCGATCGC 1 cut(s) 330
SfcI CTRYAG 2 cut(s) 15, 645
SgfI GCGATCGC 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 307
Sse9I AATT 3 cut(s) 100, 208, 412
SsiI CCGC 1 cut(s) 441
StyD4I CCNGG 3 cut(s) 90, 178, 387
TaaI ACNGT 4 cut(s) 295, 584, 607, 638
TaiI ACGT 2 cut(s) 276, 454
TaqI TCGA 4 cut(s) 352, 366, 402, 479
TasI AATT 3 cut(s) 100, 208, 412
TfiI GAWTC 2 cut(s) 9, 155
Tru1I TTAA 2 cut(s) 278, 593
Tru9I TTAA 2 cut(s) 278, 593
TscAI CASTG 4 cut(s) 19, 274, 314, 471
TseFI GTSAC 1 cut(s) 269
TseI GCWGC 3 cut(s) 17, 203, 630
Tsp45I GTSAC 1 cut(s) 269
TspDTI ATGAA 1 cut(s) 134
TspRI CASTG 4 cut(s) 19, 274, 314, 471
XapI RAATTY 1 cut(s) 100
XmiI GTMKAC 1 cut(s) 479
ZraI GACGTC 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.