Rmu_sc0003271.1_g000008

purine permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003271.1
OG0031261
Physical Location & Seq
Reverse (-)
51118 .. 51546
429 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 429 bp
atgaaccgacaactacatccactttgtgtagagcgtctccaattaattgaagctggaattggtcatttgggtactcccattttcctgacacgtaatcacatcaaggctccattgcatgcctggatttctgcccttgagatagtggcttgggaagaatataaaagcaagccaagcttatatcggattcttctacttctaagcaacgtggcaatgctcgtagcgtttcctgcatctaaccttctatttcgtatctattttgctaatggcggcactagcaagtggatcacttcatgggtggctgttgcagagtggtctctaactgctttgatcttactgcctatatacttcttctgcaaaaagtctcctacccccatgcatttaacacatacattagcttatgttgtgcttaggtttcttaagtgctgctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005345 GO:0005575 GO:0006810 GO:0006863 GO:0008150 GO:0015205 GO:0015851 GO:0016020 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PUNUT

Protein Analysis

142

Amino Acids

16.19

Weight (kDa)

9.51

Isoelectric Point (pI)

33.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PUNUT PF16913 63 - 129 2.7e-09 Purine nucleobase transmembrane transport
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031261)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003271.1_g000008
rosa_samantha Rh7DG384100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 267
AclWI GGATC 1 cut(s) 290
AdeI CACNNNGTG 1 cut(s) 26
AfaI GTAC 1 cut(s) 73
AflII CTTAAG 1 cut(s) 416
AflIII ACRYGT 1 cut(s) 89
AgsI TTSAA 1 cut(s) 50
AjnI CCWGG 1 cut(s) 119
AjuI GAANNNNNNNTTGG 2 cut(s) 42, 74
AluBI AGCT 3 cut(s) 53, 174, 395
AluI AGCT 3 cut(s) 53, 174, 395
Alw26I GTCTC 3 cut(s) 41, 318, 366
AlwI GGATC 1 cut(s) 290
ApeKI GCWGC 1 cut(s) 423
AseI ATTAAT 1 cut(s) 44
BbvI GCAGC 1 cut(s) 410
BciT130I CCWGG 1 cut(s) 121
BcoDI GTCTC 3 cut(s) 41, 318, 366
BfaI CTAG 1 cut(s) 273
BfrI CTTAAG 1 cut(s) 416
BisI GCNGC 2 cut(s) 268, 424
BlsI GCNGC 2 cut(s) 269, 425
Bme1390I CCNGG 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 121
BmsI GCATC 1 cut(s) 239
Bpu10I CCTNAGC 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 155
BsaAI YACGTR 1 cut(s) 92
BsaI GGTCTC 1 cut(s) 318
Bse3DI GCAATG 2 cut(s) 110, 216
BseBI CCWGG 1 cut(s) 121
BseGI GGATG 1 cut(s) 16
BseMI GCAATG 2 cut(s) 110, 216
BseXI GCAGC 1 cut(s) 410
BsmAI GTCTC 3 cut(s) 41, 318, 366
BsmBI CGTCTC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 318
Bsp143I GATC 2 cut(s) 282, 327
BspACI CCGC 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 108
BspPI GGATC 1 cut(s) 290
BspTI CTTAAG 1 cut(s) 416
BspTNI GGTCTC 1 cut(s) 318
BsrDI GCAATG 2 cut(s) 110, 216
BssMI GATC 2 cut(s) 282, 327
Bst2UI CCWGG 1 cut(s) 121
BstAFI CTTAAG 1 cut(s) 416
BstBAI YACGTR 1 cut(s) 92
BstC8I GCNNGC 2 cut(s) 117, 167
BstDEI CTNAG 2 cut(s) 197, 407
BstF5I GGATG 1 cut(s) 16
BstKTI GATC 2 cut(s) 285, 330
BstMAI GTCTC 3 cut(s) 41, 318, 366
BstMBI GATC 2 cut(s) 282, 327
BstMWI GCNNNNNNNGC 3 cut(s) 171, 227, 273
BstNI CCWGG 1 cut(s) 121
BstNSI RCATGY 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 119
BstV1I GCAGC 1 cut(s) 410
BtsCI GGATG 1 cut(s) 16
Cac8I GCNNGC 2 cut(s) 117, 167
CseI GACGC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 72
CviAII CATG 3 cut(s) 116, 291, 373
CviJI RGCY 7 cut(s) 53, 107, 146, 169, 174, 299, 395
CviKI_1 RGCY 7 cut(s) 53, 107, 146, 169, 174, 299, 395
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 2 cut(s) 197, 407
DpnI GATC 2 cut(s) 284, 329
DpnII GATC 2 cut(s) 282, 327
DraIII CACNNNGTG 1 cut(s) 26
Eco31I GGTCTC 1 cut(s) 318
EcoRII CCWGG 1 cut(s) 119
EcoT22I ATGCAT 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 41
FaeI CATG 3 cut(s) 119, 294, 376
FaiI YATR 9 cut(s) 117, 159, 178, 292, 341, 343, 374, 387, 399
FalI AAGNNNNNCTT 2 cut(s) 158, 190
FatI CATG 3 cut(s) 115, 290, 372
Fnu4HI GCNGC 2 cut(s) 268, 424
FokI GGATG 1 cut(s) 3
Fsp4HI GCNGC 2 cut(s) 268, 424
FspBI CTAG 1 cut(s) 273
GluI GCNGC 2 cut(s) 268, 424
HgaI GACGC 1 cut(s) 23
Hin1II CATG 3 cut(s) 119, 294, 376
HindIII AAGCTT 1 cut(s) 172
HinfI GANTC 1 cut(s) 184
Hpy188I TCNGA 1 cut(s) 183
Hpy188III TCNNGA 1 cut(s) 85
HpyAV CCTTC 1 cut(s) 248
HpyCH4IV ACGT 2 cut(s) 91, 204
HpyCH4V TGCA 5 cut(s) 115, 230, 305, 354, 376
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 227, 273
HpyF3I CTNAG 2 cut(s) 197, 407
HpySE526I ACGT 2 cut(s) 91, 204
Hsp92II CATG 3 cut(s) 119, 294, 376
Kzo9I GATC 2 cut(s) 282, 327
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 5 cut(s) 39, 98, 106, 133, 240
Lsp1109I GCAGC 1 cut(s) 410
LweI GCATC 1 cut(s) 239
MaeI CTAG 1 cut(s) 273
MaeII ACGT 2 cut(s) 91, 204
MalI GATC 2 cut(s) 284, 329
MboI GATC 2 cut(s) 282, 327
MboII GAAGA 3 cut(s) 164, 179, 340
MluCI AATT 3 cut(s) 41, 45, 57
Mph1103I ATGCAT 1 cut(s) 378
MseI TTAA 3 cut(s) 44, 380, 417
MspCI CTTAAG 1 cut(s) 416
MspR9I CCNGG 1 cut(s) 121
MvaI CCWGG 1 cut(s) 121
MwoI GCNNNNNNNGC 3 cut(s) 171, 227, 273
NdeII GATC 2 cut(s) 282, 327
NlaIII CATG 3 cut(s) 119, 294, 376
NlaIV GGNNCC 1 cut(s) 108
NsiI ATGCAT 1 cut(s) 378
NspI RCATGY 1 cut(s) 119
PaeI GCATGC 1 cut(s) 119
PfeI GAWTC 1 cut(s) 184
PkrI GCNGC 2 cut(s) 269, 425
Ppu21I YACGTR 1 cut(s) 92
PshBI ATTAAT 1 cut(s) 44
Psp6I CCWGG 1 cut(s) 119
PspGI CCWGG 1 cut(s) 119
PspN4I GGNNCC 1 cut(s) 108
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
SaqAI TTAA 3 cut(s) 44, 380, 417
SatI GCNGC 2 cut(s) 268, 424
Sau3AI GATC 2 cut(s) 282, 327
ScrFI CCNGG 1 cut(s) 121
SetI ASST 7 cut(s) 55, 94, 176, 207, 240, 397, 413
SfaNI GCATC 1 cut(s) 239
SmlI CTYRAG 2 cut(s) 134, 416
SmoI CTYRAG 2 cut(s) 134, 416
SphI GCATGC 1 cut(s) 119
Sse9I AATT 3 cut(s) 41, 45, 57
SsiI CCGC 1 cut(s) 267
SspMI CTAG 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 119
TaiI ACGT 2 cut(s) 94, 207
TasI AATT 3 cut(s) 41, 45, 57
TauI GCSGC 1 cut(s) 270
TfiI GAWTC 1 cut(s) 184
Tru1I TTAA 3 cut(s) 44, 380, 417
Tru9I TTAA 3 cut(s) 44, 380, 417
TseI GCWGC 1 cut(s) 423
TspDTI ATGAA 2 cut(s) 17, 279
Vha464I CTTAAG 1 cut(s) 416
VspI ATTAAT 1 cut(s) 44
XceI RCATGY 1 cut(s) 119
XcmI CCANNNNNNNNNTGG 1 cut(s) 117
XspI CTAG 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.