Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003326.1

Orthogroup ID

OG0031172

Physical Location & Seq

Genomic Coordinates Reverse (-)

17115 .. 18684

Gene Structure 1570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003326.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ctgtacacactccattcacatttcagcgtctctgtttcccctatttcacgctctccttgtttctcttcctttcactcaaatcgggtctccttcttcctcctcctcactccaaagaaccctaattttctgctcgcaatcttccttcgcggatccatggcgacattggactccgacgtgccgatgatcccggtaggtgagggctccagctctgcaggtccttcctcgaccaagaggcccaagcgatttgagatcaagaagtggaacgccgtcgctctctgggcctgggatattgttgtggataattgcgccatttgcaggaaccatattatggacctctgcatcgagtgccaagcgaaccaggcaagcgctacaagtgaggagtgtaccgttgcttggggggtttgtaaccatgccttccacttccactgcataagcagatggctcaagactcgtcaagtgtgtcccttggataacagcgagtgggagttccagaagtatggtcactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000152 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019005 GO:0019538 GO:0019787 GO:0019788 GO:0019941 GO:0030163 GO:0031146 GO:0031461 GO:0031462 GO:0031467 GO:0032446 GO:0032991 GO:0036211 GO:0043161 GO:0043170 GO:0043224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045116 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0080008 GO:0097602 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04066 ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05200 ko05211 map03420 map04066 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05200 map05211

Pfam Domains

Protein Families

zf-rbx1

Protein Analysis

168

Amino Acids

18.97

Weight (kDa)

8.15

Isoelectric Point (pI)

51.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031172)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001933.1_g000005 Rmu_sc0003326.1_g000003

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	203
AccB7I	CCANNNNNTGG	1 cut(s)	328
AccII	CGCG	1 cut(s)	147
AciI	CCGC	1 cut(s)	147
AclWI	GGATC	3 cut(s)	144, 157, 178
AfaI	GTAC	2 cut(s)	5, 385
AfeI	AGCGCT	1 cut(s)	367
AfiI	CCNNNNNNNGG	3 cut(s)	315, 328, 393
AjiI	CACGTC	1 cut(s)	175
AjnI	CCWGG	2 cut(s)	281, 357
AluBI	AGCT	1 cut(s)	207
AluI	AGCT	1 cut(s)	207
Alw26I	GTCTC	2 cut(s)	34, 91
AlwI	GGATC	3 cut(s)	144, 157, 178
Aor51HI	AGCGCT	1 cut(s)	367
AoxI	GGCC	2 cut(s)	233, 279
AspLEI	GCGC	2 cut(s)	308, 368
AspS9I	GGNCC	4 cut(s)	215, 234, 279, 331
AsuC2I	CCSGG	1 cut(s)	188
AsuHPI	GGTGA	1 cut(s)	206
AvaII	GGWCC	2 cut(s)	215, 331
BamHI	GGATCC	1 cut(s)	149
BanII	GRGCYC	1 cut(s)	203
BccI	CCATC	1 cut(s)	432
BceAI	ACGGC	1 cut(s)	251
BciT130I	CCWGG	2 cut(s)	283, 359
BcnI	CCSGG	1 cut(s)	188
BcoDI	GTCTC	2 cut(s)	34, 91
BfaI	CTAG	1 cut(s)	505
BfmI	CTRYAG	1 cut(s)	210
BfoI	RGCGCY	1 cut(s)	369
BfuAI	ACCTGC	1 cut(s)	203
Bme1390I	CCNGG	3 cut(s)	188, 283, 359
Bme18I	GGWCC	2 cut(s)	215, 331
BmgBI	CACGTC	1 cut(s)	175
BmgT120I	GGNCC	4 cut(s)	215, 234, 279, 331
BmiI	GGNNCC	3 cut(s)	151, 202, 320
BmrFI	CCNGG	3 cut(s)	188, 283, 359
BmsI	GCATC	1 cut(s)	348
BpmI	CTGGAG	1 cut(s)	187
BpuEI	CTTGAG	1 cut(s)	428
BpuMI	CCSGG	1 cut(s)	188
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	3 cut(s)	153, 282, 465
Bsc4I	CCNNNNNNNGG	3 cut(s)	315, 328, 393
BseBI	CCWGG	2 cut(s)	283, 359
BseDI	CCNNGG	3 cut(s)	153, 282, 465
BseLI	CCNNNNNNNGG	3 cut(s)	315, 328, 393
BseRI	GAGGAG	3 cut(s)	89, 92, 392
Bsh1236I	CGCG	1 cut(s)	147
BshFI	GGCC	2 cut(s)	235, 281
BsiSI	CCGG	1 cut(s)	188
BslFI	GGGAC	1 cut(s)	447
BslI	CCNNNNNNNGG	3 cut(s)	315, 328, 393
BsmAI	GTCTC	2 cut(s)	34, 91
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	2 cut(s)	235, 281
Bso31I	GGTCTC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	149, 183, 249
Bsp19I	CCATGG	1 cut(s)	153
BspACI	CCGC	1 cut(s)	147
BspANI	GGCC	2 cut(s)	235, 281
BspFNI	CGCG	1 cut(s)	147
BspLI	GGNNCC	3 cut(s)	151, 202, 320
BspMAI	CTGCAG	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	3 cut(s)	144, 157, 178
BspTNI	GGTCTC	1 cut(s)	91
BsrGI	TGTACA	1 cut(s)	3
BssECI	CCNNGG	3 cut(s)	153, 282, 465
BssMI	GATC	3 cut(s)	149, 183, 249
BssT1I	CCWWGG	2 cut(s)	153, 465
Bst2UI	CCWGG	2 cut(s)	283, 359
Bst4CI	ACNGT	1 cut(s)	388
Bst6I	CTCTTC	1 cut(s)	70
BstAPI	GCANNNNNTGC	1 cut(s)	345
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	132, 364
BstDSI	CCRYGG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	147
BstH2I	RGCGCY	1 cut(s)	369
BstHHI	GCGC	2 cut(s)	308, 368
BstKTI	GATC	3 cut(s)	152, 186, 252
BstMAI	GTCTC	2 cut(s)	34, 91
BstMBI	GATC	3 cut(s)	149, 183, 249
BstMWI	GCNNNNNNNGC	4 cut(s)	278, 312, 345, 359
BstNI	CCWGG	2 cut(s)	283, 359
BstSCI	CCNGG	3 cut(s)	186, 281, 357
BstSFI	CTRYAG	1 cut(s)	210
BstUI	CGCG	1 cut(s)	147
BstX2I	RGATCY	1 cut(s)	149
BstXI	CCANNNNNNTGG	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	235, 281
BtgI	CCRYGG	1 cut(s)	153
BtrI	CACGTC	1 cut(s)	175
BtsI	GCAGTG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	424
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	2 cut(s)	132, 364
CfoI	GCGC	2 cut(s)	308, 368
Cfr13I	GGNCC	4 cut(s)	215, 234, 279, 331
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	4, 384
CviAII	CATG	2 cut(s)	154, 410
CviJI	RGCY	5 cut(s)	201, 207, 235, 281, 442
CviKI_1	RGCY	5 cut(s)	201, 207, 235, 281, 442
CviQI	GTAC	2 cut(s)	4, 384
DpnI	GATC	3 cut(s)	151, 185, 251
DpnII	GATC	3 cut(s)	149, 183, 249
Eam1104I	CTCTTC	1 cut(s)	70
EarI	CTCTTC	1 cut(s)	70
Eco130I	CCWWGG	2 cut(s)	153, 465
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	91
Eco47I	GGWCC	2 cut(s)	215, 331
Eco47III	AGCGCT	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	281, 357
EcoT14I	CCWWGG	2 cut(s)	153, 465
EcoT38I	GRGCYC	1 cut(s)	203
ErhI	CCWWGG	2 cut(s)	153, 465
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	2 cut(s)	157, 413
FaiI	YATR	6 cut(s)	155, 324, 329, 411, 431, 498
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	2 cut(s)	153, 409
FriOI	GRGCYC	1 cut(s)	203
FspBI	CTAG	1 cut(s)	505
GlaI	GCGC	2 cut(s)	307, 367
GsuI	CTGGAG	1 cut(s)	187
HaeII	RGCGCY	1 cut(s)	369
HaeIII	GGCC	2 cut(s)	235, 281
HapII	CCGG	1 cut(s)	188
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	308, 368
Hin1II	CATG	2 cut(s)	157, 413
Hin6I	GCGC	2 cut(s)	306, 366
HinP1I	GCGC	2 cut(s)	306, 366
HinfI	GANTC	2 cut(s)	167, 448
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	206
Hpy166II	GTNNAC	2 cut(s)	6, 384
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	3 cut(s)	253, 445, 490
Hpy8I	GTNNAC	2 cut(s)	6, 384
Hpy99I	CGWCG	2 cut(s)	176, 272
HpyAV	CCTTC	4 cut(s)	100, 152, 228, 424
HpyCH4III	ACNGT	1 cut(s)	388
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	4 cut(s)	212, 315, 339, 429
HpyF10VI	GCNNNNNNNGC	4 cut(s)	278, 312, 345, 359
HpySE526I	ACGT	1 cut(s)	174
Hsp92II	CATG	2 cut(s)	157, 413
HspAI	GCGC	2 cut(s)	306, 366
Kzo9I	GATC	3 cut(s)	149, 183, 249
LmnI	GCTCC	1 cut(s)	206
LweI	GCATC	1 cut(s)	348
MaeI	CTAG	1 cut(s)	505
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	404, 500
MalI	GATC	3 cut(s)	151, 185, 251
MboI	GATC	3 cut(s)	149, 183, 249
MboII	GAAGA	3 cut(s)	57, 85, 130
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	2 cut(s)	121, 301
MlyI	GAGTC	2 cut(s)	161, 442
MmeI	TCCRAC	1 cut(s)	195
MnlI	CCTC	8 cut(s)	107, 110, 113, 190, 225, 232, 344, 370
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	3 cut(s)	188, 283, 359
MvaI	CCWGG	2 cut(s)	283, 359
MvnI	CGCG	1 cut(s)	147
MwoI	GCNNNNNNNGC	4 cut(s)	278, 312, 345, 359
NciI	CCSGG	1 cut(s)	188
NcoI	CCATGG	1 cut(s)	153
NdeII	GATC	3 cut(s)	149, 183, 249
NlaIII	CATG	2 cut(s)	157, 413
NlaIV	GGNNCC	3 cut(s)	151, 202, 320
NmuCI	GTSAC	1 cut(s)	500
PflMI	CCANNNNNTGG	1 cut(s)	328
PleI	GAGTC	2 cut(s)	161, 442
PpsI	GAGTC	2 cut(s)	161, 442
PpuMI	RGGWCCY	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	215
Psp6I	CCWGG	2 cut(s)	281, 357
PspGI	CCWGG	2 cut(s)	281, 357
PspN4I	GGNNCC	3 cut(s)	151, 202, 320
PspPI	GGNCC	4 cut(s)	215, 234, 279, 331
PspPPI	RGGWCCY	1 cut(s)	215
PstI	CTGCAG	1 cut(s)	214
PsuI	RGATCY	1 cut(s)	149
RsaI	GTAC	2 cut(s)	5, 385
RsaNI	GTAC	2 cut(s)	4, 384
Sau3AI	GATC	3 cut(s)	149, 183, 249
Sau96I	GGNCC	4 cut(s)	215, 234, 279, 331
SchI	GAGTC	2 cut(s)	161, 442
ScrFI	CCNGG	3 cut(s)	188, 283, 359
SduI	GDGCHC	1 cut(s)	203
SetI	ASST	5 cut(s)	177, 196, 209, 217, 336
SfaNI	GCATC	1 cut(s)	348
SfcI	CTRYAG	1 cut(s)	210
SinI	GGWCC	2 cut(s)	215, 331
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	121, 301
SsiI	CCGC	1 cut(s)	147
SspMI	CTAG	1 cut(s)	505
StyD4I	CCNGG	3 cut(s)	186, 281, 357
StyI	CCWWGG	2 cut(s)	153, 465
TaaI	ACNGT	1 cut(s)	388
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	224, 342
TasI	AATT	2 cut(s)	121, 301
TatI	WGTACW	1 cut(s)	3
TscAI	CASTG	1 cut(s)	431
TseFI	GTSAC	1 cut(s)	500
Tsp45I	GTSAC	1 cut(s)	500
TspRI	CASTG	1 cut(s)	431
Van91I	CCANNNNNTGG	1 cut(s)	328
VpaK11BI	GGWCC	2 cut(s)	215, 331
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XspI	CTAG	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.