Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003439.1

Orthogroup ID

OG0031264

Physical Location & Seq

Genomic Coordinates Forward (+)

7653 .. 8179

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

atgagattgttggcattgtgcaaggggttggtccaaatggtcatcgcttcaaagttggcgaccatgtcggagttggaacctataccgattcatgtagagactgagagtattgtaacgatggccaagaaaattactgtgataaagaagcagtttacacttataaccgttttgattatgatggtacaattacccaatggaggattctccactttcactgttgtccatgaaaggtactgctttaaaataccggaagataatccattggcttcagcagcaccactgctttgtgctggtattactgtttactctcccatgatggaccataagatgaaccaacccgggaaatccctaggcgtgatcggccttggcggtcttggtcacatggatgtgaaattcggcaagacttttggactcaatgtcaccgttttcagagtcaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

146

Amino Acids

15.93

Weight (kDa)

9.41

Isoelectric Point (pI)

25.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031264)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003439.1_g000003
rosa_samantha	Rh2DG534000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	161
AciI	CCGC	1 cut(s)	369
AcoI	YGGCCR	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	392
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	183, 233
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	1 cut(s)	51
AhdI	GACNNNNNGTC	1 cut(s)	416
AjuI	GAANNNNNNNTTGG	2 cut(s)	185, 217
Alw26I	GTCTC	1 cut(s)	92
Ama87I	CYCGRG	1 cut(s)	338
AoxI	GGCC	2 cut(s)	120, 361
ApeKI	GCWGC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	392
AspA2I	CCTAGG	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	31, 319
AsuC2I	CCSGG	2 cut(s)	339, 340
AsuHPI	GGTGA	1 cut(s)	412
AvaI	CYCGRG	1 cut(s)	338
AvaII	GGWCC	2 cut(s)	31, 319
AvrII	CCTAGG	1 cut(s)	349
BalI	TGGCCA	1 cut(s)	122
BbvI	GCAGC	1 cut(s)	284
BccI	CCATC	3 cut(s)	112, 172, 310
BcnI	CCSGG	2 cut(s)	339, 340
BcoDI	GTCTC	1 cut(s)	92
BfaI	CTAG	1 cut(s)	350
BisI	GCNGC	1 cut(s)	273
BlnI	CCTAGG	1 cut(s)	349
BlsI	GCNGC	1 cut(s)	274
Bme1390I	CCNGG	2 cut(s)	339, 340
Bme18I	GGWCC	2 cut(s)	31, 319
BmeRI	GACNNNNNGTC	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	338
BmgT120I	GGNCC	2 cut(s)	31, 319
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	339, 340
BpuMI	CCSGG	2 cut(s)	339, 340
BsaJI	CCNNGG	3 cut(s)	338, 349, 364
BsaWI	WCCGGW	1 cut(s)	247
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	338, 349, 364
BseGI	GGATG	1 cut(s)	391
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseMII	CTCAG	1 cut(s)	93
BseXI	GCAGC	1 cut(s)	284
BshFI	GGCC	2 cut(s)	122, 363
BsiHKCI	CYCGRG	1 cut(s)	338
BsiSI	CCGG	2 cut(s)	248, 339
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmAI	GTCTC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	122, 363
BsoBI	CYCGRG	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	357
BspACI	CCGC	1 cut(s)	369
BspANI	GGCC	2 cut(s)	122, 363
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	78
BssECI	CCNNGG	3 cut(s)	338, 349, 364
BssMI	GATC	1 cut(s)	357
BssT1I	CCWWGG	2 cut(s)	349, 364
Bst4CI	ACNGT	5 cut(s)	136, 166, 217, 301, 424
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	391
BstKTI	GATC	1 cut(s)	360
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	357
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 360
BstSCI	CCNGG	2 cut(s)	337, 338
BstV1I	GCAGC	1 cut(s)	284
BsuRI	GGCC	2 cut(s)	122, 363
BtgZI	GCGATG	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	391
BtsI	GCAGTG	1 cut(s)	278
BtsIMutI	CAGTG	2 cut(s)	213, 278
Cfr13I	GGNCC	2 cut(s)	31, 319
Cfr9I	CCCGGG	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	182, 232
CviAII	CATG	5 cut(s)	64, 92, 224, 313, 382
CviJI	RGCY	3 cut(s)	122, 266, 363
CviKI_1	RGCY	3 cut(s)	122, 266, 363
CviQI	GTAC	2 cut(s)	182, 232
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	359
DpnII	GATC	1 cut(s)	357
DraI	TTTAAA	1 cut(s)	241
DriI	GACNNNNNGTC	1 cut(s)	416
EaeI	YGGCCR	1 cut(s)	120
Eam1105I	GACNNNNNGTC	1 cut(s)	416
Eco130I	CCWWGG	2 cut(s)	349, 364
Eco47I	GGWCC	2 cut(s)	31, 319
Eco57I	CTGAAG	1 cut(s)	252
Eco88I	CYCGRG	1 cut(s)	338
EcoT14I	CCWWGG	2 cut(s)	349, 364
ErhI	CCWWGG	2 cut(s)	349, 364
FaeI	CATG	5 cut(s)	67, 95, 227, 316, 385
FaiI	YATR	9 cut(s)	65, 83, 93, 161, 176, 225, 314, 324, 383
FatI	CATG	5 cut(s)	63, 91, 223, 312, 381
Fnu4HI	GCNGC	1 cut(s)	273
FokI	GGATG	1 cut(s)	398
Fsp4HI	GCNGC	1 cut(s)	273
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	122, 363
HapII	CCGG	2 cut(s)	248, 339
Hin1II	CATG	5 cut(s)	67, 95, 227, 316, 385
HinfI	GANTC	4 cut(s)	88, 201, 411, 432
HpaII	CCGG	2 cut(s)	248, 339
HphI	GGTGA	1 cut(s)	412
Hpy166II	GTNNAC	2 cut(s)	153, 304
Hpy188I	TCNGA	2 cut(s)	70, 431
Hpy8I	GTNNAC	2 cut(s)	153, 304
HpyCH4III	ACNGT	5 cut(s)	136, 166, 217, 301, 424
HpyCH4V	TGCA	1 cut(s)	21
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 360
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	5 cut(s)	67, 95, 227, 316, 385
Kzo9I	GATC	1 cut(s)	357
LpnPI	CCDG	3 cut(s)	261, 276, 352
Lsp1109I	GCAGC	1 cut(s)	284
MaeI	CTAG	1 cut(s)	350
MaeIII	GTNAC	3 cut(s)	112, 377, 418
MalI	GATC	1 cut(s)	359
MboI	GATC	1 cut(s)	357
MboII	GAAGA	1 cut(s)	263
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	3 cut(s)	129, 185, 392
MluNI	TGGCCA	1 cut(s)	122
MlyI	GAGTC	2 cut(s)	405, 441
MmeI	TCCRAC	2 cut(s)	48, 54
MnlI	CCTC	1 cut(s)	191
Mox20I	TGGCCA	1 cut(s)	122
MscI	TGGCCA	1 cut(s)	122
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	2 cut(s)	384, 386
Msp20I	TGGCCA	1 cut(s)	122
MspI	CCGG	2 cut(s)	248, 339
MspR9I	CCNGG	2 cut(s)	339, 340
MwoI	GCNNNNNNNGC	2 cut(s)	272, 360
NciI	CCSGG	2 cut(s)	339, 340
NdeII	GATC	1 cut(s)	357
NlaIII	CATG	5 cut(s)	67, 95, 227, 316, 385
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	377, 418
PfeI	GAWTC	2 cut(s)	88, 201
PflFI	GACNNNGTC	1 cut(s)	64
PkrI	GCNGC	1 cut(s)	274
PleI	GAGTC	2 cut(s)	405, 440
PpsI	GAGTC	2 cut(s)	405, 440
PsiI	TTATAA	1 cut(s)	161
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	2 cut(s)	31, 319
PsyI	GACNNNGTC	1 cut(s)	64
RsaI	GTAC	2 cut(s)	183, 233
RsaNI	GTAC	2 cut(s)	182, 232
RseI	CAYNNNNRTG	2 cut(s)	384, 386
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	273
Sau3AI	GATC	1 cut(s)	357
Sau96I	GGNCC	2 cut(s)	31, 319
SchI	GAGTC	2 cut(s)	405, 441
ScrFI	CCNGG	2 cut(s)	339, 340
SetI	ASST	2 cut(s)	82, 233
SinI	GGWCC	2 cut(s)	31, 319
SmaI	CCCGGG	1 cut(s)	340
SmiMI	CAYNNNNRTG	2 cut(s)	384, 386
Sse9I	AATT	3 cut(s)	129, 185, 392
SsiI	CCGC	1 cut(s)	369
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	337, 338
StyI	CCWWGG	2 cut(s)	349, 364
TaaI	ACNGT	5 cut(s)	136, 166, 217, 301, 424
TasI	AATT	3 cut(s)	129, 185, 392
TfiI	GAWTC	2 cut(s)	88, 201
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	220, 285
TseFI	GTSAC	2 cut(s)	377, 418
TseI	GCWGC	1 cut(s)	272
Tsp45I	GTSAC	2 cut(s)	377, 418
TspDTI	ATGAA	3 cut(s)	80, 240, 344
TspMI	CCCGGG	1 cut(s)	338
TspRI	CASTG	2 cut(s)	220, 285
Tth111I	GACNNNGTC	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	31, 319
XapI	RAATTY	1 cut(s)	392
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XmaI	CCCGGG	1 cut(s)	338
XmaJI	CCTAGG	1 cut(s)	349
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.