Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0031264

Physical Location & Seq

Genomic Coordinates Reverse (-)

76420126 .. 76420646

Gene Structure 521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG534000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGTTCATCGCTTCAAAGTTGGTGACCATGTCGGAGTTGGAACCTATACCGATTCATGTAGAGACTGCGAGTATTGTAACGATGGCCAAGAAAATTACTGTGATAAAGAAGCAGTTTACACTTATAACCGTTTTGATTATGATGGTACAATTACCCATGGAGGATTCTCCACTTTCACTGTTGTCCATGAAAGGGTACTGCTTTAAAATACTAGAAGATTATCCATTGGCTTCAGCAGCACCACTGCTTTGTGCTGGCATTACTGTTTACTCTCCCATGATGGACCATAAGATGAACCAACCTGGGAAATCCCTAGGCGTGATCGGCCTTGGCGGTCTTGGTCACATGGCTGTGAAATTCGGCAAGGCTTTGGGACTCAAGGTAACTGTTTTCAGCACAAGTATGTCAAAGAAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009698 GO:0009699 GO:0009808 GO:0009809 GO:0009987 GO:0019438 GO:0019748 GO:0044237 GO:0044249 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0071704 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

ADH_N ADH_zinc_N

Protein Analysis

139

Amino Acids

15.04

Weight (kDa)

9.28

Isoelectric Point (pI)

31.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031264)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003439.1_g000003
rosa_samantha	Rh2DG534000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	125
AciI	CCGC	1 cut(s)	333
AcoI	YGGCCR	1 cut(s)	84
AcsI	RAATTY	1 cut(s)	356
AcuI	CTGAAG	1 cut(s)	216
AfaI	GTAC	2 cut(s)	147, 197
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	1 cut(s)	15
AjnI	CCWGG	1 cut(s)	301
Alw26I	GTCTC	1 cut(s)	56
AoxI	GGCC	2 cut(s)	84, 325
ApeKI	GCWGC	1 cut(s)	236
ApoI	RAATTY	1 cut(s)	356
AspA2I	CCTAGG	1 cut(s)	313
AspS9I	GGNCC	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	283
AvrII	CCTAGG	1 cut(s)	313
BalI	TGGCCA	1 cut(s)	86
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	3 cut(s)	76, 136, 274
BciT130I	CCWGG	1 cut(s)	303
BcoDI	GTCTC	1 cut(s)	56
BfaI	CTAG	2 cut(s)	212, 314
BisI	GCNGC	1 cut(s)	237
BlnI	CCTAGG	1 cut(s)	313
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	303
Bme18I	GGWCC	1 cut(s)	283
BmgT120I	GGNCC	1 cut(s)	283
BmiI	GGNNCC	1 cut(s)	42
BmrFI	CCNGG	1 cut(s)	303
BpuEI	CTTGAG	1 cut(s)	362
BsaJI	CCNNGG	4 cut(s)	156, 302, 313, 328
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	303
BseDI	CCNNGG	4 cut(s)	156, 302, 313, 328
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseXI	GCAGC	1 cut(s)	248
BshFI	GGCC	2 cut(s)	86, 327
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	2 cut(s)	86, 327
Bsp143I	GATC	1 cut(s)	321
Bsp19I	CCATGG	1 cut(s)	156
BspACI	CCGC	1 cut(s)	333
BspANI	GGCC	2 cut(s)	86, 327
BspLI	GGNNCC	1 cut(s)	42
BssECI	CCNNGG	4 cut(s)	156, 302, 313, 328
BssMI	GATC	1 cut(s)	321
BssT1I	CCWWGG	3 cut(s)	156, 313, 328
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	5 cut(s)	100, 130, 180, 265, 388
BstC8I	GCNNGC	1 cut(s)	256
BstDSI	CCRYGG	1 cut(s)	156
BstEII	GGTNACC	1 cut(s)	22
BstKTI	GATC	1 cut(s)	324
BstMAI	GTCTC	1 cut(s)	56
BstMBI	GATC	1 cut(s)	321
BstMWI	GCNNNNNNNGC	2 cut(s)	236, 324
BstNI	CCWGG	1 cut(s)	303
BstPI	GGTNACC	1 cut(s)	22
BstSCI	CCNGG	1 cut(s)	301
BstV1I	GCAGC	1 cut(s)	248
BsuRI	GGCC	2 cut(s)	86, 327
BtgI	CCRYGG	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	242
BtsIMutI	CAGTG	2 cut(s)	176, 242
Cac8I	GCNNGC	1 cut(s)	256
Cfr13I	GGNCC	1 cut(s)	283
Csp6I	GTAC	2 cut(s)	146, 196
CviAII	CATG	6 cut(s)	28, 56, 157, 187, 277, 346
CviJI	RGCY	5 cut(s)	86, 230, 327, 350, 368
CviKI_1	RGCY	5 cut(s)	86, 230, 327, 350, 368
CviQI	GTAC	2 cut(s)	146, 196
DpnI	GATC	1 cut(s)	323
DpnII	GATC	1 cut(s)	321
DraI	TTTAAA	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	84
Eco130I	CCWWGG	3 cut(s)	156, 313, 328
Eco47I	GGWCC	1 cut(s)	283
Eco57I	CTGAAG	1 cut(s)	216
Eco91I	GGTNACC	1 cut(s)	22
EcoO65I	GGTNACC	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	301
EcoT14I	CCWWGG	3 cut(s)	156, 313, 328
ErhI	CCWWGG	3 cut(s)	156, 313, 328
FaeI	CATG	6 cut(s)	31, 59, 160, 190, 280, 349
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	6 cut(s)	27, 55, 156, 186, 276, 345
Fnu4HI	GCNGC	1 cut(s)	237
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	2 cut(s)	212, 314
GluI	GCNGC	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	86, 327
Hin1II	CATG	6 cut(s)	31, 59, 160, 190, 280, 349
HinfI	GANTC	3 cut(s)	52, 164, 375
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	117, 268
Hpy188I	TCNGA	1 cut(s)	34
Hpy8I	GTNNAC	2 cut(s)	117, 268
HpyCH4III	ACNGT	5 cut(s)	100, 130, 180, 265, 388
HpyF10VI	GCNNNNNNNGC	2 cut(s)	236, 324
Hsp92II	CATG	6 cut(s)	31, 59, 160, 190, 280, 349
Kzo9I	GATC	1 cut(s)	321
LpnPI	CCDG	3 cut(s)	240, 288, 315
Lsp1109I	GCAGC	1 cut(s)	248
MaeI	CTAG	2 cut(s)	212, 314
MaeIII	GTNAC	4 cut(s)	22, 76, 341, 382
MalI	GATC	1 cut(s)	323
MboI	GATC	1 cut(s)	321
MboII	GAAGA	1 cut(s)	227
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	3 cut(s)	93, 149, 356
MluNI	TGGCCA	1 cut(s)	86
MlyI	GAGTC	1 cut(s)	369
MmeI	TCCRAC	2 cut(s)	12, 18
MnlI	CCTC	1 cut(s)	154
Mox20I	TGGCCA	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	1 cut(s)	204
MslI	CAYNNNNRTG	2 cut(s)	350, 401
Msp20I	TGGCCA	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	2 cut(s)	236, 324
NcoI	CCATGG	1 cut(s)	156
NdeII	GATC	1 cut(s)	321
NlaIII	CATG	6 cut(s)	31, 59, 160, 190, 280, 349
NlaIV	GGNNCC	1 cut(s)	42
NmuCI	GTSAC	2 cut(s)	22, 341
PfeI	GAWTC	2 cut(s)	52, 164
PflFI	GACNNNGTC	1 cut(s)	28
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	369
PsiI	TTATAA	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	301
PspEI	GGTNACC	1 cut(s)	22
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	42
PspPI	GGNCC	1 cut(s)	283
PsyI	GACNNNGTC	1 cut(s)	28
RsaI	GTAC	2 cut(s)	147, 197
RsaNI	GTAC	2 cut(s)	146, 196
RseI	CAYNNNNRTG	2 cut(s)	350, 401
SaqAI	TTAA	1 cut(s)	204
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	283
SchI	GAGTC	1 cut(s)	369
ScrFI	CCNGG	1 cut(s)	303
SetI	ASST	3 cut(s)	46, 304, 384
SinI	GGWCC	1 cut(s)	283
SmiMI	CAYNNNNRTG	2 cut(s)	350, 401
SmlI	CTYRAG	1 cut(s)	377
SmoI	CTYRAG	1 cut(s)	377
Sse9I	AATT	3 cut(s)	93, 149, 356
SsiI	CCGC	1 cut(s)	333
SspMI	CTAG	2 cut(s)	212, 314
StyD4I	CCNGG	1 cut(s)	301
StyI	CCWWGG	3 cut(s)	156, 313, 328
TaaI	ACNGT	5 cut(s)	100, 130, 180, 265, 388
TasI	AATT	3 cut(s)	93, 149, 356
TfiI	GAWTC	2 cut(s)	52, 164
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TscAI	CASTG	2 cut(s)	183, 249
TseFI	GTSAC	2 cut(s)	22, 341
TseI	GCWGC	1 cut(s)	236
Tsp45I	GTSAC	2 cut(s)	22, 341
TspDTI	ATGAA	3 cut(s)	44, 203, 308
TspRI	CASTG	2 cut(s)	183, 249
Tth111I	GACNNNGTC	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	283
XapI	RAATTY	1 cut(s)	356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	34
XmaJI	CCTAGG	1 cut(s)	313
XspI	CTAG	2 cut(s)	212, 314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.