Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003441.1

Orthogroup ID

OG0031265

Physical Location & Seq

Genomic Coordinates Forward (+)

137247 .. 139550

Gene Structure 2304 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

atgagtgagattagcattatcaaaactctcaccagtctcaaggaattgtcgaactgcaagataaacatcaatgcctacaacattacaaaatttatgggaaaaaatggtgacataccatcaggccctgggccttatcagacaaaagaaaagctttctgcatgtttggattttgagggaatatctggagctgacatgcaaatcaatgatcctcctgagaactttaagtttgatcttgagcgtatcattgaagatttgatctttatatatttcttcgcgggaaattattttctaccccacatgccaacattggaaattcatgagggtgcaattgatttactgatgacagtctacaagaaagaactcaagaatattggtggttatttggttgatatgattcgggtgcaattaagacgaaaaatgaacccagaagagatagaacagctgccggtgtcaaaaatcacggcggagctgaaaccaacccagaatcgaaaatcacctccacgagaggacaatctctcatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

173

Amino Acids

19.73

Weight (kDa)

5.5

Isoelectric Point (pI)

47.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_M	PF17846	75 - 138	6.3e-25	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0031265)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003441.1_g000029
rosa_samantha	Rh5DG336600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	348
AccII	CGCG	1 cut(s)	275
AciI	CCGC	2 cut(s)	275, 464
AclWI	GGATC	1 cut(s)	200
AcsI	RAATTY	2 cut(s)	89, 312
AgsI	TTSAA	1 cut(s)	248
AjnI	CCWGG	1 cut(s)	124
AluBI	AGCT	4 cut(s)	151, 188, 442, 469
AluI	AGCT	4 cut(s)	151, 188, 442, 469
Alw26I	GTCTC	1 cut(s)	41
AlwI	GGATC	1 cut(s)	200
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	121, 128
ApeKI	GCWGC	1 cut(s)	442
ApoI	RAATTY	2 cut(s)	89, 312
AspS9I	GGNCC	2 cut(s)	122, 128
AsuHPI	GGTGA	3 cut(s)	22, 119, 486
BauI	CACGAG	1 cut(s)	501
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	477
BciT130I	CCWGG	1 cut(s)	126
BcoDI	GTCTC	1 cut(s)	41
BisI	GCNGC	1 cut(s)	443
BlsI	GCNGC	1 cut(s)	444
Bme1390I	CCNGG	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	122, 128
BmrFI	CCNGG	1 cut(s)	126
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	3 cut(s)	23, 254, 347
BsaBI	GATNNNNATC	1 cut(s)	65
BsaJI	CCNNGG	2 cut(s)	124, 125
Bse118I	RCCGGY	1 cut(s)	445
Bse1I	ACTGG	1 cut(s)	33
Bse8I	GATNNNNATC	1 cut(s)	65
BseBI	CCWGG	1 cut(s)	126
BseDI	CCNNGG	2 cut(s)	124, 125
BseJI	GATNNNNATC	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	33
BseXI	GCAGC	1 cut(s)	429
Bsh1236I	CGCG	1 cut(s)	275
BshFI	GGCC	2 cut(s)	123, 130
BsiSI	CCGG	1 cut(s)	446
BsmAI	GTCTC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	123, 130
Bsp143I	GATC	3 cut(s)	205, 229, 255
BspACI	CCGC	2 cut(s)	275, 464
BspANI	GGCC	2 cut(s)	123, 130
BspCNI	CTCAG	1 cut(s)	205
BspFNI	CGCG	1 cut(s)	275
BspHI	TCATGA	2 cut(s)	316, 518
BspPI	GGATC	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	445
BsrI	ACTGG	1 cut(s)	33
BssAI	RCCGGY	1 cut(s)	445
BssECI	CCNNGG	2 cut(s)	124, 125
BssMI	GATC	3 cut(s)	205, 229, 255
BssSI	CACGAG	1 cut(s)	501
Bst2BI	CACGAG	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	126
Bst4CI	ACNGT	1 cut(s)	346
Bst6I	CTCTTC	1 cut(s)	423
BstDEI	CTNAG	1 cut(s)	213
BstFNI	CGCG	1 cut(s)	275
BstKTI	GATC	3 cut(s)	208, 232, 258
BstMAI	GTCTC	1 cut(s)	41
BstMBI	GATC	3 cut(s)	205, 229, 255
BstNI	CCWGG	1 cut(s)	126
BstNSI	RCATGY	3 cut(s)	162, 196, 301
BstSCI	CCNGG	1 cut(s)	124
BstUI	CGCG	1 cut(s)	275
BstV1I	GCAGC	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	123, 130
CaiI	CAGNNNCTG	1 cut(s)	125
CciI	TCATGA	2 cut(s)	316, 518
Cfr10I	RCCGGY	1 cut(s)	445
Cfr13I	GGNCC	2 cut(s)	122, 128
CviAII	CATG	5 cut(s)	159, 193, 298, 317, 519
CviJI	RGCY	6 cut(s)	123, 130, 151, 188, 442, 469
CviKI_1	RGCY	6 cut(s)	123, 130, 151, 188, 442, 469
DdeI	CTNAG	1 cut(s)	213
DpnI	GATC	3 cut(s)	207, 231, 257
DpnII	GATC	3 cut(s)	205, 229, 255
Eam1104I	CTCTTC	1 cut(s)	423
EarI	CTCTTC	1 cut(s)	423
EciI	GGCGGA	1 cut(s)	479
EcoO109I	RGGNCCY	1 cut(s)	122
EcoRII	CCWGG	1 cut(s)	124
FaeI	CATG	5 cut(s)	162, 196, 301, 320, 522
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FatI	CATG	5 cut(s)	158, 192, 297, 316, 518
FauI	CCCGC	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	443
Fsp4HI	GCNGC	1 cut(s)	443
GluI	GCNGC	1 cut(s)	443
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	2 cut(s)	123, 130
HapII	CCGG	1 cut(s)	446
Hin1II	CATG	5 cut(s)	162, 196, 301, 320, 522
HindIII	AAGCTT	1 cut(s)	149
HinfI	GANTC	2 cut(s)	394, 484
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	3 cut(s)	22, 119, 486
Hpy166II	GTNNAC	1 cut(s)	349
Hpy188I	TCNGA	1 cut(s)	138
Hpy188III	TCNNGA	6 cut(s)	183, 212, 233, 317, 364, 519
Hpy8I	GTNNAC	1 cut(s)	349
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	5 cut(s)	57, 158, 196, 326, 403
HpyF3I	CTNAG	1 cut(s)	213
Hsp92II	CATG	5 cut(s)	162, 196, 301, 320, 522
Kzo9I	GATC	3 cut(s)	205, 229, 255
LmnI	GCTCC	2 cut(s)	185, 466
LpnPI	CCDG	9 cut(s)	46, 105, 111, 138, 168, 225, 438, 459, 494
Lsp1109I	GCAGC	1 cut(s)	429
MaeIII	GTNAC	1 cut(s)	107
MalI	GATC	3 cut(s)	207, 231, 257
MboI	GATC	3 cut(s)	205, 229, 255
MboII	GAAGA	3 cut(s)	260, 262, 440
MfeI	CAATTG	1 cut(s)	327
MluCI	AATT	6 cut(s)	44, 89, 280, 312, 327, 404
MnlI	CCTC	5 cut(s)	166, 219, 313, 499, 507
MseI	TTAA	2 cut(s)	222, 407
MslI	CAYNNNNRTG	1 cut(s)	321
MspA1I	CMGCKG	1 cut(s)	442
MspI	CCGG	1 cut(s)	446
MspR9I	CCNGG	1 cut(s)	126
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	126
MvnI	CGCG	1 cut(s)	275
NdeII	GATC	3 cut(s)	205, 229, 255
NlaIII	CATG	5 cut(s)	162, 196, 301, 320, 522
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	3 cut(s)	162, 196, 301
PagI	TCATGA	2 cut(s)	316, 518
PasI	CCCWGGG	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	394, 484
PkrI	GCNGC	1 cut(s)	444
Psp6I	CCWGG	1 cut(s)	124
PspGI	CCWGG	1 cut(s)	124
PspPI	GGNCC	2 cut(s)	122, 128
PstNI	CAGNNNCTG	1 cut(s)	125
PvuII	CAGCTG	1 cut(s)	442
RseI	CAYNNNNRTG	1 cut(s)	321
SaqAI	TTAA	2 cut(s)	222, 407
SatI	GCNGC	1 cut(s)	443
Sau3AI	GATC	3 cut(s)	205, 229, 255
Sau96I	GGNCC	2 cut(s)	122, 128
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	5 cut(s)	153, 190, 444, 471, 499
SmiMI	CAYNNNNRTG	1 cut(s)	321
SmlI	CTYRAG	3 cut(s)	38, 233, 362
SmoI	CTYRAG	3 cut(s)	38, 233, 362
Sse9I	AATT	6 cut(s)	44, 89, 280, 312, 327, 404
SsiI	CCGC	2 cut(s)	275, 464
SspI	AATATT	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	124
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	2 cut(s)	50, 487
TasI	AATT	6 cut(s)	44, 89, 280, 312, 327, 404
TfiI	GAWTC	2 cut(s)	394, 484
Tru1I	TTAA	2 cut(s)	222, 407
Tru9I	TTAA	2 cut(s)	222, 407
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	305, 434
XapI	RAATTY	2 cut(s)	89, 312
XceI	RCATGY	3 cut(s)	162, 196, 301
XmiI	GTMKAC	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.