Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0031265

Physical Location & Seq

Genomic Coordinates Reverse (-)

45214364 .. 45217214

Gene Structure 2851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG336600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGATGAAAAAGCCTAATCAGTTTCTGCATGTTTGGATTTTGAGGGAATATCTGGAGCTTGACATGCAAATCAGTGATCCTCCTGAGAACTTTAAGTTTGATCTTGAGCGTATCATTGATGATTTCATCTTTATATGTTTCTTCGCGGGAAATGATTTTTTACCCCACATGCCAACATTGGAAATTCATGAGGGTGCAATTGATTTGCTGATGACAGTCTACAAGAAAGAATTCAAGAATATTGGTGGCTATTTGGTTGATATGATTCAGATGTACCCTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000966 GO:0000967 GO:0003674 GO:0003824 GO:0004518 GO:0004527 GO:0004532 GO:0004534 GO:0004540 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006364 GO:0006396 GO:0006401 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008409 GO:0009056 GO:0009057 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010586 GO:0010587 GO:0010604 GO:0010628 GO:0016070 GO:0016072 GO:0016075 GO:0016787 GO:0016788 GO:0016796 GO:0016896 GO:0019222 GO:0019439 GO:0022613 GO:0034470 GO:0034471 GO:0034641 GO:0034655 GO:0034660 GO:0034661 GO:0042254 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043632 GO:0043633 GO:0043634 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044260 GO:0044265 GO:0044270 GO:0044424 GO:0044464 GO:0046483 GO:0046700 GO:0048518 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0060147 GO:0060149 GO:0060255 GO:0060968 GO:0060969 GO:0065007 GO:0071025 GO:0071027 GO:0071029 GO:0071035 GO:0071046 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090503 GO:0140098 GO:1901360 GO:1901361 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko03008 ko03018 map03008 map03018

Pfam Domains

Protein Families

XRN_N

Protein Analysis

94

Amino Acids

11.28

Weight (kDa)

4.68

Isoelectric Point (pI)

23.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRN_M	PF17846	32 - 88	2.3e-29	Xrn1 helical domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031265)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003441.1_g000029
rosa_samantha	Rh5DG336600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	219
AccII	CGCG	1 cut(s)	146
AciI	CCGC	1 cut(s)	146
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	2 cut(s)	183, 230
AfaI	GTAC	1 cut(s)	275
AgsI	TTSAA	1 cut(s)	235
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
AlwI	GGATC	1 cut(s)	71
AlwNI	CAGNNNCTG	1 cut(s)	25
ApoI	RAATTY	2 cut(s)	183, 230
Asp700I	GAANNNNTTC	1 cut(s)	230
BpmI	CTGGAG	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	75
Bsh1236I	CGCG	1 cut(s)	146
Bsp143I	GATC	2 cut(s)	76, 100
BspACI	CCGC	1 cut(s)	146
BspCNI	CTCAG	1 cut(s)	76
BspFNI	CGCG	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	187
BspPI	GGATC	1 cut(s)	71
BssMI	GATC	2 cut(s)	76, 100
Bst4CI	ACNGT	1 cut(s)	217
BstDEI	CTNAG	1 cut(s)	84
BstFNI	CGCG	1 cut(s)	146
BstKTI	GATC	2 cut(s)	79, 103
BstMBI	GATC	2 cut(s)	76, 100
BstMWI	GCNNNNNNNGC	1 cut(s)	64
BstNSI	RCATGY	3 cut(s)	32, 67, 172
BstUI	CGCG	1 cut(s)	146
BtsIMutI	CAGTG	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	25
CciI	TCATGA	1 cut(s)	187
Csp6I	GTAC	1 cut(s)	274
CviAII	CATG	4 cut(s)	29, 64, 169, 188
CviJI	RGCY	3 cut(s)	13, 58, 249
CviKI_1	RGCY	3 cut(s)	13, 58, 249
CviQI	GTAC	1 cut(s)	274
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	2 cut(s)	78, 102
DpnII	GATC	2 cut(s)	76, 100
EcoRI	GAATTC	1 cut(s)	230
FaeI	CATG	4 cut(s)	32, 67, 172, 191
FaiI	YATR	8 cut(s)	30, 65, 134, 136, 170, 189, 263, 283
FatI	CATG	4 cut(s)	28, 63, 168, 187
FauI	CCCGC	1 cut(s)	139
FblI	GTMKAC	1 cut(s)	219
GsuI	CTGGAG	1 cut(s)	74
Hin1II	CATG	4 cut(s)	32, 67, 172, 191
HinfI	GANTC	1 cut(s)	265
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	5 cut(s)	53, 83, 104, 188, 235
Hpy8I	GTNNAC	1 cut(s)	220
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4V	TGCA	3 cut(s)	28, 67, 197
HpyF10VI	GCNNNNNNNGC	1 cut(s)	64
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	4 cut(s)	32, 67, 172, 191
Kzo9I	GATC	2 cut(s)	76, 100
LmnI	GCTCC	1 cut(s)	55
LpnPI	CCDG	2 cut(s)	38, 96
MalI	GATC	2 cut(s)	78, 102
MboI	GATC	2 cut(s)	76, 100
MboII	GAAGA	1 cut(s)	133
MfeI	CAATTG	1 cut(s)	198
MluCI	AATT	3 cut(s)	183, 198, 230
MnlI	CCTC	3 cut(s)	36, 90, 184
MroXI	GAANNNNTTC	1 cut(s)	230
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	192
MunI	CAATTG	1 cut(s)	198
MvnI	CGCG	1 cut(s)	146
MwoI	GCNNNNNNNGC	1 cut(s)	64
NdeII	GATC	2 cut(s)	76, 100
NlaIII	CATG	4 cut(s)	32, 67, 172, 191
NspI	RCATGY	3 cut(s)	32, 67, 172
PagI	TCATGA	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	275
RsaNI	GTAC	1 cut(s)	274
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	1 cut(s)	93
Sau3AI	GATC	2 cut(s)	76, 100
SetI	ASST	1 cut(s)	60
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	104
SmoI	CTYRAG	1 cut(s)	104
Sse9I	AATT	3 cut(s)	183, 198, 230
SsiI	CCGC	1 cut(s)	146
SspI	AATATT	1 cut(s)	241
TaaI	ACNGT	1 cut(s)	217
TasI	AATT	3 cut(s)	183, 198, 230
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	79
TspDTI	ATGAA	3 cut(s)	20, 115, 176
TspRI	CASTG	1 cut(s)	79
XapI	RAATTY	2 cut(s)	183, 230
XceI	RCATGY	3 cut(s)	32, 67, 172
XmiI	GTMKAC	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.