Rmu_sc0003562.1_g000005

Binds to the signal sequence of presecretory protein when they emerge from the ribosomes and transfers them to TRAM (translocating chain-associating membrane protein)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003562.1
Physical Location & Seq
Forward (+)
10347 .. 10721
375 bp
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UTR
Exon/CDS
Intron
Rmu_sc0003562.1_g000005.1.cds

Sequence Viewer

Length: 375 bp
atggacaagattcaggaagttgttcctaaacttgacaaccagccagagcttctgcaaaagctttcagaagggaccttcacgctgaggattatgtatgagcagtttcagaacttgcttcaaatgggcccacttagccagctgacttcaatgcttccaggtactgagctaatgccaaacggtaatgataaggaaagccaggccaaaatcaagcggtacatgaccatgatggactcgatgacaaatgaagagttggacagcacaaatacaaaaatcattactgagtctcgtatagtgcgaatagcacgaggttctggtcgtctggtaagagaagtgatggagatgtttgaagagtacaagcgccttgctaaaatatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Pfam Domains
Protein Families

Protein Analysis

124

Amino Acids

14.39

Weight (kDa)

5.59

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031270)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003562.1_g000003 Rmu_sc0003562.1_g000005

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 211
AfaI GTAC 3 cut(s) 160, 215, 353
AgsI TTSAA 3 cut(s) 119, 147, 347
AjnI CCWGG 2 cut(s) 154, 195
AluBI AGCT 4 cut(s) 49, 61, 139, 166
AluI AGCT 4 cut(s) 49, 61, 139, 166
Alw26I GTCTC 1 cut(s) 288
AlwNI CAGNNNCTG 1 cut(s) 161
AoxI GGCC 2 cut(s) 124, 198
ApaI GGGCCC 1 cut(s) 128
Asp700I GAANNNNTTC 1 cut(s) 21
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 3 cut(s) 72, 124, 125
AvaII GGWCC 1 cut(s) 72
BaeGI GKGCMC 1 cut(s) 128
BanII GRGCYC 1 cut(s) 128
BauI CACGAG 1 cut(s) 303
BbvCI CCTCAGC 1 cut(s) 83
BccI CCATC 2 cut(s) 220, 328
BciT130I CCWGG 2 cut(s) 156, 197
BcoDI GTCTC 1 cut(s) 288
BfoI RGCGCY 1 cut(s) 361
Bme1390I CCNGG 2 cut(s) 156, 197
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 3 cut(s) 72, 124, 125
BmiI GGNNCC 2 cut(s) 73, 126
BmrFI CCNGG 2 cut(s) 156, 197
Bpu10I CCTNAGC 1 cut(s) 83
BseBI CCWGG 2 cut(s) 156, 197
BseMII CTCAG 3 cut(s) 74, 153, 270
BseSI GKGCMC 1 cut(s) 128
BshFI GGCC 2 cut(s) 126, 200
BslFI GGGAC 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 85
BsnI GGCC 2 cut(s) 126, 200
Bsp120I GGGCCC 1 cut(s) 124
Bsp1286I GDGCHC 1 cut(s) 128
BspACI CCGC 1 cut(s) 211
BspANI GGCC 2 cut(s) 126, 200
BspCNI CTCAG 3 cut(s) 75, 154, 271
BspLI GGNNCC 2 cut(s) 73, 126
BssSI CACGAG 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 303
Bst2UI CCWGG 2 cut(s) 156, 197
Bst4CI ACNGT 1 cut(s) 179
Bst6I CTCTTC 2 cut(s) 240, 342
BstC8I GCNNGC 1 cut(s) 137
BstDEI CTNAG 4 cut(s) 83, 131, 162, 279
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 1 cut(s) 360
BstMAI GTCTC 1 cut(s) 288
BstMWI GCNNNNNNNGC 1 cut(s) 132
BstNI CCWGG 2 cut(s) 156, 197
BstSCI CCNGG 2 cut(s) 154, 195
BstSLI GKGCMC 1 cut(s) 128
BsuRI GGCC 2 cut(s) 126, 200
Cac8I GCNNGC 1 cut(s) 137
CaiI CAGNNNCTG 1 cut(s) 161
CfoI GCGC 1 cut(s) 360
Cfr13I GGNCC 3 cut(s) 72, 124, 125
Csp6I GTAC 3 cut(s) 159, 214, 352
CviAII CATG 2 cut(s) 217, 223
CviJI RGCY 9 cut(s) 43, 49, 61, 126, 135, 139, 166, 195, 200
CviKI_1 RGCY 9 cut(s) 43, 49, 61, 126, 135, 139, 166, 195, 200
CviQI GTAC 3 cut(s) 159, 214, 352
DdeI CTNAG 4 cut(s) 83, 131, 162, 279
Eam1104I CTCTTC 2 cut(s) 240, 342
EarI CTCTTC 2 cut(s) 240, 342
Eco24I GRGCYC 1 cut(s) 128
Eco47I GGWCC 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 154, 195
EcoT38I GRGCYC 1 cut(s) 128
FaeI CATG 2 cut(s) 220, 226
FaiI YATR 6 cut(s) 92, 96, 218, 224, 290, 373
FaqI GGGAC 1 cut(s) 85
FatI CATG 2 cut(s) 216, 222
FriOI GRGCYC 1 cut(s) 128
GlaI GCGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 2 cut(s) 126, 200
HhaI GCGC 1 cut(s) 360
Hin1II CATG 2 cut(s) 220, 226
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 3 cut(s) 10, 230, 281
Hpy188I TCNGA 2 cut(s) 67, 108
Hpy188III TCNNGA 1 cut(s) 14
HpyAV CCTTC 2 cut(s) 62, 85
HpyCH4III ACNGT 1 cut(s) 179
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 1 cut(s) 132
HpyF3I CTNAG 4 cut(s) 83, 131, 162, 279
Hsp92II CATG 2 cut(s) 220, 226
HspAI GCGC 1 cut(s) 358
LpnPI CCDG 9 cut(s) 53, 57, 141, 149, 168, 182, 209, 297, 305
MboII GAAGA 2 cut(s) 257, 359
MhlI GDGCHC 1 cut(s) 128
MlyI GAGTC 2 cut(s) 224, 290
MmeI TCCRAC 1 cut(s) 231
MnlI CCTC 2 cut(s) 78, 299
MroXI GAANNNNTTC 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 139
MspR9I CCNGG 2 cut(s) 156, 197
MvaI CCWGG 2 cut(s) 156, 197
MwoI GCNNNNNNNGC 1 cut(s) 132
NlaIII CATG 2 cut(s) 220, 226
NlaIV GGNNCC 2 cut(s) 73, 126
PcsI WCGNNNNNNNCGW 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 21
PfeI GAWTC 1 cut(s) 10
PleI GAGTC 2 cut(s) 224, 289
PpsI GAGTC 2 cut(s) 224, 289
PpuMI RGGWCCY 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 72
Psp6I CCWGG 2 cut(s) 154, 195
PspGI CCWGG 2 cut(s) 154, 195
PspN4I GGNNCC 2 cut(s) 73, 126
PspOMI GGGCCC 1 cut(s) 124
PspPI GGNCC 3 cut(s) 72, 124, 125
PspPPI RGGWCCY 1 cut(s) 72
PstNI CAGNNNCTG 1 cut(s) 161
PvuII CAGCTG 1 cut(s) 139
RsaI GTAC 3 cut(s) 160, 215, 353
RsaNI GTAC 3 cut(s) 159, 214, 352
RseI CAYNNNNRTG 1 cut(s) 221
Sau96I GGNCC 3 cut(s) 72, 124, 125
SchI GAGTC 2 cut(s) 224, 290
ScrFI CCNGG 2 cut(s) 156, 197
SduI GDGCHC 1 cut(s) 128
SetI ASST 7 cut(s) 51, 63, 77, 141, 160, 168, 310
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 221
SsiI CCGC 1 cut(s) 211
StyD4I CCNGG 2 cut(s) 154, 195
TaaI ACNGT 1 cut(s) 179
TaqI TCGA 1 cut(s) 233
TatI WGTACW 1 cut(s) 351
TfiI GAWTC 1 cut(s) 10
TspDTI ATGAA 1 cut(s) 258
VpaK11BI GGWCC 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 21
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.