Rmu_sc0003567.1_g000001

Dihydrolipoyl dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003567.1
OG0029475
Physical Location & Seq
Forward (+)
1 .. 1872
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003567.1_g000001.1.cds

Sequence Viewer

Length: 741 bp
atcaccccagcaaaggatgggaaaccagtcataattgaactaattgacgcaaagaccaaggaaccaagagatactctagaggtagatgcagcattaattgccaccggaagagccccattcacacacggtcttggattggagaatattgatgtagcaacacaacgtggttttattcctgttgatgagcgcatgagggtaatagatgcaaatggcaaattggttcctcacctgttttgcattggtgatgccaacggcaagatgatgcttgctcatgcagcaagtgcacaaggcatttcagtggttgaacaagtcacaggaagagaccatgtgctcaaccatttgagcatccccgcagcttgcttcacccatcctgaaatcagtatggttggattgacagagccccaagcaagggagatggctgagaaggagggatttgaagtaagtattgccaagacaagcttcaaggccaacacaaaggcccttgcagaaaatgaaggagagggacttgctaagttgatatacagaccagataacggagagatccttggcgttcatatctttggattgcatgctgcagacctcattcacgaggcatccaatgcaatagcattgggaacacgcattcaagatctcaaacttgctgtccatgcacaccctaccttgtctgaagtgcttgatgaacttttcaagtcagcaaaggttaaagagcatgtttctagccctcaagcagtcgcagtctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004148 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006082 GO:0006084 GO:0006085 GO:0006086 GO:0006090 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0009987 GO:0016491 GO:0016651 GO:0016667 GO:0016668 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019752 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032787 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046390 GO:0046483 GO:0046685 GO:0050896 GO:0051186 GO:0051188 GO:0055086 GO:0055114 GO:0070013 GO:0071616 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576
KEGG Pathways
Metabolic & Signaling
ko00010 ko00020 ko00260 ko00280 ko00620 ko00630 ko00640 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00020 map00260 map00280 map00620 map00630 map00640 map01100 map01110 map01120 map01130 map01200
Pfam Domains
Protein Families
Pyr_redox_2 Pyr_redox_dim

Protein Analysis

246

Amino Acids

26.33

Weight (kDa)

5.72

Isoelectric Point (pI)

21.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0029475)

Species Orthologous Gene IDs
pyrus_communis pycom16g13250
rosa_multiflora Rmu_sc0003567.1_g000001

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 351
AclWI GGATC 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 687
AdeI CACNNNGTG 1 cut(s) 164
AfiI CCNNNNNNNGG 4 cut(s) 13, 408, 409, 533
AgsI TTSAA 6 cut(s) 38, 305, 437, 463, 626, 688
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 2 cut(s) 356, 459
AluI AGCT 2 cut(s) 356, 459
Alw21I GWGCWC 2 cut(s) 286, 333
Alw26I GTCTC 1 cut(s) 315
Alw44I GTGCAC 1 cut(s) 282
AlwI GGATC 1 cut(s) 535
AoxI GGCC 2 cut(s) 465, 477
ApaLI GTGCAC 1 cut(s) 282
ApeKI GCWGC 4 cut(s) 89, 275, 353, 572
ArsI GACNNNNNNTTYG 2 cut(s) 627, 659
AseI ATTAAT 1 cut(s) 95
AspLEI GCGC 1 cut(s) 189
AspS9I GGNCC 1 cut(s) 478
AsuHPI GGTGA 3 cut(s) 218, 254, 355
BaeGI GKGCMC 1 cut(s) 286
BanII GRGCYC 2 cut(s) 115, 402
BauI CACGAG 1 cut(s) 587
Bbv12I GWGCWC 2 cut(s) 286, 333
BbvI GCAGC 4 cut(s) 101, 287, 365, 559
BccI CCATC 3 cut(s) 11, 375, 409
BceAI ACGGC 1 cut(s) 268
BcoDI GTCTC 1 cut(s) 315
BfaI CTAG 2 cut(s) 77, 717
BfmI CTRYAG 1 cut(s) 573
BglII AGATCT 1 cut(s) 628
BisI GCNGC 4 cut(s) 90, 276, 354, 573
BlsI GCNGC 4 cut(s) 91, 277, 355, 574
BmgT120I GGNCC 1 cut(s) 478
BmiI GGNNCC 2 cut(s) 63, 222
BmsI GCATC 6 cut(s) 76, 193, 235, 252, 354, 602
BpuEI CTTGAG 1 cut(s) 708
BsaI GGTCTC 1 cut(s) 315
BsaJI CCNNGG 2 cut(s) 57, 544
BsaWI WCCGGW 1 cut(s) 104
Bsc4I CCNNNNNNNGG 4 cut(s) 13, 408, 409, 533
Bse1I ACTGG 1 cut(s) 26
BseDI CCNNGG 2 cut(s) 57, 544
BseGI GGATG 4 cut(s) 22, 345, 367, 593
BseLI CCNNNNNNNGG 4 cut(s) 13, 408, 409, 533
BseMII CTCAG 1 cut(s) 411
BseNI ACTGG 1 cut(s) 26
BseSI GKGCMC 1 cut(s) 286
BseXI GCAGC 4 cut(s) 101, 287, 365, 559
BseYI CCCAGC 1 cut(s) 7
BshFI GGCC 2 cut(s) 467, 479
BsiHKAI GWGCWC 2 cut(s) 286, 333
BsiSI CCGG 1 cut(s) 105
BslFI GGGAC 1 cut(s) 516
BslI CCNNNNNNNGG 4 cut(s) 13, 408, 409, 533
BsmAI GTCTC 1 cut(s) 315
BsmFI GGGAC 1 cut(s) 516
BsmI GAATGC 1 cut(s) 621
BsnI GGCC 2 cut(s) 467, 479
Bso31I GGTCTC 1 cut(s) 315
Bsp1286I GDGCHC 4 cut(s) 115, 286, 333, 402
Bsp143I GATC 2 cut(s) 540, 628
BspACI CCGC 1 cut(s) 351
BspANI GGCC 2 cut(s) 467, 479
BspCNI CTCAG 1 cut(s) 412
BspLI GGNNCC 2 cut(s) 63, 222
BspMAI CTGCAG 1 cut(s) 577
BspPI GGATC 1 cut(s) 535
BspQI GCTCTTC 1 cut(s) 103
BspTNI GGTCTC 1 cut(s) 315
BsrI ACTGG 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 57, 544
BssMI GATC 2 cut(s) 540, 628
BssSI CACGAG 1 cut(s) 587
BssT1I CCWWGG 2 cut(s) 57, 544
Bst2BI CACGAG 1 cut(s) 587
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 2 cut(s) 103, 313
BstAPI GCANNNNNTGC 3 cut(s) 98, 281, 599
BstC8I GCNNGC 3 cut(s) 267, 358, 570
BstDEI CTNAG 2 cut(s) 420, 510
BstF5I GGATG 4 cut(s) 22, 345, 367, 593
BstHHI GCGC 1 cut(s) 189
BstKTI GATC 2 cut(s) 543, 631
BstMAI GTCTC 1 cut(s) 315
BstMBI GATC 2 cut(s) 540, 628
BstMWI GCNNNNNNNGC 5 cut(s) 98, 275, 281, 599, 647
BstNSI RCATGY 2 cut(s) 572, 713
BstSFI CTRYAG 1 cut(s) 573
BstSLI GKGCMC 1 cut(s) 286
BstV1I GCAGC 4 cut(s) 101, 287, 365, 559
BstX2I RGATCY 2 cut(s) 540, 628
BstYI RGATCY 2 cut(s) 540, 628
BsuRI GGCC 2 cut(s) 467, 479
BtsCI GGATG 4 cut(s) 22, 345, 367, 593
BtsIMutI CAGTG 1 cut(s) 303
Cac8I GCNNGC 3 cut(s) 267, 358, 570
CfoI GCGC 1 cut(s) 189
Cfr13I GGNCC 1 cut(s) 478
CseI GACGC 1 cut(s) 56
CviAII CATG 6 cut(s) 190, 272, 326, 569, 647, 710
CviJI RGCY 8 cut(s) 113, 356, 400, 419, 459, 467, 479, 720
CviKI_1 RGCY 8 cut(s) 113, 356, 400, 419, 459, 467, 479, 720
DdeI CTNAG 2 cut(s) 420, 510
DpnI GATC 2 cut(s) 542, 630
DpnII GATC 2 cut(s) 540, 628
DraIII CACNNNGTG 1 cut(s) 164
Eam1104I CTCTTC 2 cut(s) 103, 313
EarI CTCTTC 2 cut(s) 103, 313
Eco130I CCWWGG 2 cut(s) 57, 544
Eco24I GRGCYC 2 cut(s) 115, 402
Eco31I GGTCTC 1 cut(s) 315
Eco57I CTGAAG 1 cut(s) 687
EcoO109I RGGNCCY 1 cut(s) 478
EcoT14I CCWWGG 2 cut(s) 57, 544
EcoT38I GRGCYC 2 cut(s) 115, 402
ErhI CCWWGG 2 cut(s) 57, 544
FaeI CATG 6 cut(s) 193, 275, 329, 572, 650, 713
FalI AAGNNNNNCTT 2 cut(s) 443, 475
FaqI GGGAC 1 cut(s) 516
FatI CATG 6 cut(s) 189, 271, 325, 568, 646, 709
FauI CCCGC 1 cut(s) 358
Fnu4HI GCNGC 4 cut(s) 90, 276, 354, 573
FokI GGATG 4 cut(s) 29, 332, 354, 580
FriOI GRGCYC 2 cut(s) 115, 402
Fsp4HI GCNGC 4 cut(s) 90, 276, 354, 573
FspBI CTAG 2 cut(s) 77, 717
GlaI GCGC 1 cut(s) 188
GluI GCNGC 4 cut(s) 90, 276, 354, 573
GsaI CCCAGC 1 cut(s) 11
HaeIII GGCC 2 cut(s) 467, 479
HapII CCGG 1 cut(s) 105
HgaI GACGC 1 cut(s) 56
HhaI GCGC 1 cut(s) 189
Hin1II CATG 6 cut(s) 193, 275, 329, 572, 650, 713
Hin6I GCGC 1 cut(s) 187
HinP1I GCGC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 457
HpaII CCGG 1 cut(s) 105
HphI GGTGA 3 cut(s) 218, 254, 355
Hpy166II GTNNAC 1 cut(s) 284
Hpy188I TCNGA 1 cut(s) 667
Hpy188III TCNNGA 4 cut(s) 77, 371, 587, 626
Hpy8I GTNNAC 1 cut(s) 284
HpyAV CCTTC 2 cut(s) 418, 488
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4IV ACGT 1 cut(s) 163
HpyF10VI GCNNNNNNNGC 5 cut(s) 98, 275, 281, 599, 647
HpyF3I CTNAG 2 cut(s) 420, 510
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 6 cut(s) 193, 275, 329, 572, 650, 713
HspAI GCGC 1 cut(s) 187
Kzo9I GATC 2 cut(s) 540, 628
LguI GCTCTTC 1 cut(s) 103
LpnPI CCDG 8 cut(s) 21, 39, 118, 189, 242, 300, 384, 540
Lsp1109I GCAGC 4 cut(s) 101, 287, 365, 559
LweI GCATC 6 cut(s) 76, 193, 235, 252, 354, 602
MaeI CTAG 2 cut(s) 77, 717
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 542, 630
MboI GATC 2 cut(s) 540, 628
MboII GAAGA 2 cut(s) 120, 330
MflI RGATCY 2 cut(s) 540, 628
MhlI GDGCHC 4 cut(s) 115, 286, 333, 402
MluCI AATT 4 cut(s) 33, 42, 96, 215
MmeI TCCRAC 1 cut(s) 367
MnlI CCTC 8 cut(s) 73, 186, 234, 421, 493, 583, 590, 732
MseI TTAA 2 cut(s) 95, 702
MslI CAYNNNNRTG 1 cut(s) 296
MspI CCGG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 621
MwoI GCNNNNNNNGC 5 cut(s) 98, 275, 281, 599, 647
NdeII GATC 2 cut(s) 540, 628
NlaIII CATG 6 cut(s) 193, 275, 329, 572, 650, 713
NlaIV GGNNCC 2 cut(s) 63, 222
NmuCI GTSAC 1 cut(s) 310
NspI RCATGY 2 cut(s) 572, 713
PaeI GCATGC 1 cut(s) 572
PciSI GCTCTTC 1 cut(s) 103
PctI GAATGC 1 cut(s) 621
PkrI GCNGC 4 cut(s) 91, 277, 355, 574
PshBI ATTAAT 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 63, 222
PspPI GGNCC 1 cut(s) 478
PstI CTGCAG 1 cut(s) 577
PsuI RGATCY 2 cut(s) 540, 628
RseI CAYNNNNRTG 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 103
SaqAI TTAA 2 cut(s) 95, 702
SatI GCNGC 4 cut(s) 90, 276, 354, 573
Sau3AI GATC 2 cut(s) 540, 628
Sau96I GGNCC 1 cut(s) 478
SduI GDGCHC 4 cut(s) 115, 286, 333, 402
SetI ASST 8 cut(s) 84, 166, 231, 358, 461, 582, 662, 702
SfaNI GCATC 6 cut(s) 76, 193, 235, 252, 354, 602
SfcI CTRYAG 1 cut(s) 573
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 723
SmoI CTYRAG 1 cut(s) 723
SphI GCATGC 1 cut(s) 572
Sse9I AATT 4 cut(s) 33, 42, 96, 215
SsiI CCGC 1 cut(s) 351
SspI AATATT 1 cut(s) 145
SspMI CTAG 2 cut(s) 77, 717
StyI CCWWGG 2 cut(s) 57, 544
TaaI ACNGT 1 cut(s) 128
TaiI ACGT 1 cut(s) 166
TasI AATT 4 cut(s) 33, 42, 96, 215
Tru1I TTAA 2 cut(s) 95, 702
Tru9I TTAA 2 cut(s) 95, 702
TscAI CASTG 1 cut(s) 303
TseFI GTSAC 1 cut(s) 310
TseI GCWGC 4 cut(s) 89, 275, 353, 572
Tsp45I GTSAC 1 cut(s) 310
TspDTI ATGAA 3 cut(s) 507, 542, 693
TspGWI ACGGA 1 cut(s) 549
TspRI CASTG 1 cut(s) 303
VneI GTGCAC 1 cut(s) 282
VspI ATTAAT 1 cut(s) 95
XbaI TCTAGA 1 cut(s) 76
XceI RCATGY 2 cut(s) 572, 713
XspI CTAG 2 cut(s) 77, 717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.