Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003602.1

Orthogroup ID

OG0031272

Physical Location & Seq

Genomic Coordinates Reverse (-)

19200 .. 26392

Gene Structure 7193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggattctgaagaacaggtttcccttcaaattccatctctcatcaaatacatatcctctaatgaagtggttggtttcgataatgttgaggagcataccattctcaatgataagcctcaaccatcagctgaggaaattgagatagctgcgttagaaagcacagttgatgaatatgaaccaccaattcatcaaaggatgcactctgtttctattagtatgccgccatcacccgtggaagttcatttagagaaaataaaaggaattctcttcagtcctgaaaccattttcaacggtggaattccagattcttcttctgctgcaattaagagtgctagtagcagcaaacttccggaagcagcaaagtgtcactctcaacccttgccaaaaggctctgcatttgaagatcaggcaacgcatgctgggcatttcccctatcatccaagtattaaaacgctgagagataacaggacggcattcagtgttgcacttcaaaatgcttttggaaaaaggatcttgaagcttgcaaatgtttatagcaagagggagttatatcgtgccttgcatgcggatttgttttcttcttttaatttgatcatcattcaaatggataaaagaaacaatgctggttgtgtggaagatttgattttaatttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006873 GO:0006950 GO:0006970 GO:0008150 GO:0008308 GO:0008509 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0019725 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0098656 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLAC1

Protein Analysis

217

Amino Acids

23.98

Weight (kDa)

5.57

Isoelectric Point (pI)

57.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031272)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003602.1_g000003 Rmu_sc0022946.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	349
AciI	CCGC	2 cut(s)	221, 566
AclWI	GGATC	1 cut(s)	518
AcsI	RAATTY	3 cut(s)	30, 261, 297
AcuI	CTGAAG	2 cut(s)	30, 253
AgsI	TTSAA	6 cut(s)	29, 289, 401, 491, 517, 602
AluBI	AGCT	3 cut(s)	128, 146, 520
AluI	AGCT	3 cut(s)	128, 146, 520
AlwI	GGATC	1 cut(s)	518
Aor13HI	TCCGGA	1 cut(s)	349
ApeKI	GCWGC	4 cut(s)	146, 317, 339, 356
ApoI	RAATTY	3 cut(s)	30, 261, 297
AsuHPI	GGTGA	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	129
BbvI	GCAGC	4 cut(s)	133, 304, 351, 368
BccI	CCATC	3 cut(s)	43, 130, 232
BceAI	ACGGC	1 cut(s)	486
BclI	TGATCA	1 cut(s)	591
BfaI	CTAG	1 cut(s)	333
BisI	GCNGC	5 cut(s)	147, 221, 318, 340, 357
BlsI	GCNGC	5 cut(s)	148, 222, 319, 341, 358
BmsI	GCATC	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	129
BsaJI	CCNNGG	1 cut(s)	231
BsaWI	WCCGGW	1 cut(s)	349
BseAI	TCCGGA	1 cut(s)	349
BseDI	CCNNGG	1 cut(s)	231
BseGI	GGATG	2 cut(s)	201, 436
BseMII	CTCAG	2 cut(s)	120, 446
BseRI	GAGGAG	1 cut(s)	104
BseXI	GCAGC	4 cut(s)	133, 304, 351, 368
BseYI	CCCAGC	1 cut(s)	419
BsiSI	CCGG	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	473
Bsp13I	TCCGGA	1 cut(s)	349
Bsp143I	GATC	3 cut(s)	403, 510, 591
BspACI	CCGC	2 cut(s)	221, 566
BspCNI	CTCAG	2 cut(s)	121, 447
BspEI	TCCGGA	1 cut(s)	349
BspPI	GGATC	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	3 cut(s)	403, 510, 591
Bst4CI	ACNGT	2 cut(s)	163, 293
Bst6I	CTCTTC	1 cut(s)	272
BstAPI	GCANNNNNTGC	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	417, 522, 564
BstDEI	CTNAG	2 cut(s)	129, 455
BstDSI	CCRYGG	1 cut(s)	231
BstF5I	GGATG	2 cut(s)	201, 436
BstKTI	GATC	3 cut(s)	406, 513, 594
BstMBI	GATC	3 cut(s)	403, 510, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 421, 563
BstNSI	RCATGY	2 cut(s)	419, 566
BstV1I	GCAGC	4 cut(s)	133, 304, 351, 368
BstX2I	RGATCY	1 cut(s)	510
BstYI	RGATCY	1 cut(s)	510
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	2 cut(s)	201, 436
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	3 cut(s)	417, 522, 564
CviAII	CATG	2 cut(s)	416, 563
CviJI	RGCY	5 cut(s)	115, 128, 146, 390, 520
CviKI_1	RGCY	5 cut(s)	115, 128, 146, 390, 520
DdeI	CTNAG	2 cut(s)	129, 455
DpnI	GATC	3 cut(s)	405, 512, 593
DpnII	GATC	3 cut(s)	403, 510, 591
Eam1104I	CTCTTC	1 cut(s)	272
EarI	CTCTTC	1 cut(s)	272
Eco57I	CTGAAG	2 cut(s)	30, 253
EcoRI	GAATTC	2 cut(s)	261, 297
FaeI	CATG	2 cut(s)	419, 566
FaiI	YATR	8 cut(s)	53, 96, 174, 218, 417, 534, 550, 564
FatI	CATG	2 cut(s)	415, 562
FbaI	TGATCA	1 cut(s)	591
Fnu4HI	GCNGC	5 cut(s)	147, 221, 318, 340, 357
FokI	GGATG	2 cut(s)	208, 423
Fsp4HI	GCNGC	5 cut(s)	147, 221, 318, 340, 357
FspBI	CTAG	1 cut(s)	333
GluI	GCNGC	5 cut(s)	147, 221, 318, 340, 357
GsaI	CCCAGC	1 cut(s)	423
HapII	CCGG	1 cut(s)	350
Hin1II	CATG	2 cut(s)	419, 566
HindIII	AAGCTT	1 cut(s)	518
HinfI	GANTC	2 cut(s)	5, 305
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	1 cut(s)	219
Hpy188I	TCNGA	1 cut(s)	10
Hpy188III	TCNNGA	4 cut(s)	275, 302, 350, 514
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	2 cut(s)	163, 293
HpyCH4V	TGCA	6 cut(s)	199, 320, 395, 485, 524, 562
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 421, 563
HpyF3I	CTNAG	2 cut(s)	129, 455
Hsp92II	CATG	2 cut(s)	419, 566
Kpn2I	TCCGGA	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	3 cut(s)	403, 510, 591
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	8 cut(s)	2, 288, 315, 363, 392, 405, 451, 609
Lsp1109I	GCAGC	4 cut(s)	133, 304, 351, 368
LweI	GCATC	1 cut(s)	186
MaeI	CTAG	1 cut(s)	333
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	3 cut(s)	405, 512, 593
MboI	GATC	3 cut(s)	403, 510, 591
MboII	GAAGA	7 cut(s)	23, 259, 300, 303, 413, 570, 647
MflI	RGATCY	1 cut(s)	510
MluCI	AATT	8 cut(s)	30, 135, 183, 261, 297, 321, 586, 648
MnlI	CCTC	5 cut(s)	67, 82, 124, 126, 534
MroI	TCCGGA	1 cut(s)	349
MseI	TTAA	4 cut(s)	324, 447, 585, 647
MslI	CAYNNNNRTG	1 cut(s)	602
MspA1I	CMGCKG	1 cut(s)	128
MspI	CCGG	1 cut(s)	350
Mva1269I	GAATGC	1 cut(s)	473
MwoI	GCNNNNNNNGC	3 cut(s)	416, 421, 563
NdeII	GATC	3 cut(s)	403, 510, 591
NlaIII	CATG	2 cut(s)	419, 566
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	2 cut(s)	419, 566
PaeI	GCATGC	2 cut(s)	419, 566
PctI	GAATGC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	5, 305
PkrI	GCNGC	5 cut(s)	148, 222, 319, 341, 358
PspFI	CCCAGC	1 cut(s)	419
PsuI	RGATCY	1 cut(s)	510
PvuII	CAGCTG	1 cut(s)	128
RseI	CAYNNNNRTG	1 cut(s)	602
SaqAI	TTAA	4 cut(s)	324, 447, 585, 647
SatI	GCNGC	5 cut(s)	147, 221, 318, 340, 357
Sau3AI	GATC	3 cut(s)	403, 510, 591
SetI	ASST	4 cut(s)	21, 130, 148, 522
SfaNI	GCATC	1 cut(s)	186
SmiMI	CAYNNNNRTG	1 cut(s)	602
SphI	GCATGC	2 cut(s)	419, 566
Sse9I	AATT	8 cut(s)	30, 135, 183, 261, 297, 321, 586, 648
SsiI	CCGC	2 cut(s)	221, 566
SspMI	CTAG	1 cut(s)	333
TaaI	ACNGT	2 cut(s)	163, 293
TaqI	TCGA	1 cut(s)	78
TasI	AATT	8 cut(s)	30, 135, 183, 261, 297, 321, 586, 648
TauI	GCSGC	1 cut(s)	223
TfiI	GAWTC	2 cut(s)	5, 305
Tru1I	TTAA	4 cut(s)	324, 447, 585, 647
Tru9I	TTAA	4 cut(s)	324, 447, 585, 647
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	365
TseI	GCWGC	4 cut(s)	146, 317, 339, 356
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	5 cut(s)	78, 176, 183, 189, 230
TspRI	CASTG	1 cut(s)	484
XapI	RAATTY	3 cut(s)	30, 261, 297
XceI	RCATGY	2 cut(s)	419, 566
XspI	CTAG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.