Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0022946.1

Orthogroup ID

OG0031272

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 692

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0022946.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

gaaattgagatagctgctttagaaagcacagttgatgaatatgaaccaccaattcatcaaaggatgcactctgtttctattagtatgccgccatcacccgtggaagttcatttagagaaaataaaaggaattctcttcagtcctgaaacaattttcaacggtggaattccagattcttcttctgctgcaattaagagtgctagtagcagcaaacttccggaagcagcaaagtgtcactctcaacccttgccaaaaggttctgcatttgaagatcaggcaacgcatgctgggcatttcccctatcatccaagtattaaaacgctgagagataacaggtttgataatttcaagacatggtccggaaaatttaaaaggcagataacactactacggggaaagacaccgcgaaaaagtgatcaaccagagaatgcttttgctcaaagtacagatcaagttgaacgtttacccgcagaccgttactttgatgcattggaagggcctgagttggacactcttagggtaattcatgctctctttattcagtattctcaattgtttgtatattttctaagaaatgataagatgatttggtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005253 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006821 GO:0006873 GO:0006950 GO:0006970 GO:0008150 GO:0008308 GO:0008509 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0015075 GO:0015103 GO:0015267 GO:0015318 GO:0015698 GO:0016020 GO:0019725 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0098656 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLAC1

Protein Analysis

198

Amino Acids

22.46

Weight (kDa)

6.49

Isoelectric Point (pI)

50.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031272)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003602.1_g000003 Rmu_sc0022946.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	406
AccIII	TCCGGA	2 cut(s)	217, 359
AciI	CCGC	3 cut(s)	89, 404, 468
AclI	AACGTT	1 cut(s)	460
AcsI	RAATTY	3 cut(s)	129, 165, 365
AcuI	CTGAAG	1 cut(s)	121
AfaI	GTAC	1 cut(s)	445
AgsI	TTSAA	4 cut(s)	157, 269, 349, 458
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Aor13HI	TCCGGA	2 cut(s)	217, 359
AoxI	GGCC	1 cut(s)	497
ApeKI	GCWGC	4 cut(s)	14, 185, 207, 224
ApoI	RAATTY	3 cut(s)	129, 165, 365
ArsI	GACNNNNNNTTYG	2 cut(s)	464, 496
AspS9I	GGNCC	2 cut(s)	357, 497
AsuHPI	GGTGA	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	172, 219, 236
BccI	CCATC	1 cut(s)	100
BclI	TGATCA	1 cut(s)	415
BfaI	CTAG	1 cut(s)	201
BisI	GCNGC	5 cut(s)	15, 89, 186, 208, 225
BlsI	GCNGC	5 cut(s)	16, 90, 187, 209, 226
Bme18I	GGWCC	1 cut(s)	357
BmgT120I	GGNCC	2 cut(s)	357, 497
BmsI	GCATC	2 cut(s)	54, 475
BsaJI	CCNNGG	1 cut(s)	99
BsaWI	WCCGGW	2 cut(s)	217, 359
BseAI	TCCGGA	2 cut(s)	217, 359
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	2 cut(s)	69, 304
BseMII	CTCAG	2 cut(s)	314, 492
BseXI	GCAGC	3 cut(s)	172, 219, 236
BseYI	CCCAGC	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	406
BshFI	GGCC	1 cut(s)	499
BsiSI	CCGG	2 cut(s)	218, 360
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	1 cut(s)	499
Bsp13I	TCCGGA	2 cut(s)	217, 359
Bsp143I	GATC	3 cut(s)	271, 415, 448
BspACI	CCGC	3 cut(s)	89, 404, 468
BspANI	GGCC	1 cut(s)	499
BspCNI	CTCAG	2 cut(s)	315, 493
BspEI	TCCGGA	2 cut(s)	217, 359
BspFNI	CGCG	1 cut(s)	406
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	3 cut(s)	271, 415, 448
Bst4CI	ACNGT	3 cut(s)	31, 161, 476
Bst6I	CTCTTC	1 cut(s)	140
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	285
BstDEI	CTNAG	4 cut(s)	323, 501, 515, 569
BstDSI	CCRYGG	1 cut(s)	99
BstF5I	GGATG	2 cut(s)	69, 304
BstFNI	CGCG	1 cut(s)	406
BstKTI	GATC	3 cut(s)	274, 418, 451
BstMBI	GATC	3 cut(s)	271, 415, 448
BstMWI	GCNNNNNNNGC	2 cut(s)	284, 289
BstNSI	RCATGY	1 cut(s)	287
BstUI	CGCG	1 cut(s)	406
BstV1I	GCAGC	3 cut(s)	172, 219, 236
BsuRI	GGCC	1 cut(s)	499
BtgI	CCRYGG	1 cut(s)	99
BtsCI	GGATG	2 cut(s)	69, 304
Cac8I	GCNNGC	1 cut(s)	285
Cfr13I	GGNCC	2 cut(s)	357, 497
Csp6I	GTAC	1 cut(s)	444
CviAII	CATG	3 cut(s)	284, 354, 527
CviJI	RGCY	2 cut(s)	14, 499
CviKI_1	RGCY	2 cut(s)	14, 499
CviQI	GTAC	1 cut(s)	444
DdeI	CTNAG	4 cut(s)	323, 501, 515, 569
DpnI	GATC	3 cut(s)	273, 417, 450
DpnII	GATC	3 cut(s)	271, 415, 448
DraI	TTTAAA	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	140
EarI	CTCTTC	1 cut(s)	140
Eco47I	GGWCC	1 cut(s)	357
Eco57I	CTGAAG	1 cut(s)	121
EcoO109I	RGGNCCY	1 cut(s)	497
EcoRI	GAATTC	2 cut(s)	129, 165
EcoT22I	ATGCAT	1 cut(s)	490
FaeI	CATG	3 cut(s)	287, 357, 530
FaiI	YATR	6 cut(s)	42, 86, 285, 355, 528, 562
FatI	CATG	3 cut(s)	283, 353, 526
FauI	CCCGC	1 cut(s)	475
FbaI	TGATCA	1 cut(s)	415
Fnu4HI	GCNGC	5 cut(s)	15, 89, 186, 208, 225
FokI	GGATG	2 cut(s)	76, 291
Fsp4HI	GCNGC	5 cut(s)	15, 89, 186, 208, 225
FspBI	CTAG	1 cut(s)	201
GluI	GCNGC	5 cut(s)	15, 89, 186, 208, 225
GsaI	CCCAGC	1 cut(s)	291
HaeIII	GGCC	1 cut(s)	499
HapII	CCGG	2 cut(s)	218, 360
Hin1II	CATG	3 cut(s)	287, 357, 530
HinfI	GANTC	1 cut(s)	173
HpaII	CCGG	2 cut(s)	218, 360
HphI	GGTGA	1 cut(s)	87
Hpy166II	GTNNAC	1 cut(s)	464
Hpy188III	TCNNGA	5 cut(s)	143, 170, 218, 349, 360
Hpy8I	GTNNAC	1 cut(s)	464
HpyAV	CCTTC	1 cut(s)	488
HpyCH4III	ACNGT	3 cut(s)	31, 161, 476
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	4 cut(s)	67, 188, 263, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	284, 289
HpyF3I	CTNAG	4 cut(s)	323, 501, 515, 569
HpySE526I	ACGT	1 cut(s)	460
Hsp92II	CATG	3 cut(s)	287, 357, 530
Kpn2I	TCCGGA	2 cut(s)	217, 359
Ksp22I	TGATCA	1 cut(s)	415
Kzo9I	GATC	3 cut(s)	271, 415, 448
LpnPI	CCDG	9 cut(s)	156, 183, 231, 260, 273, 319, 373, 435, 513
Lsp1109I	GCAGC	3 cut(s)	172, 219, 236
LweI	GCATC	2 cut(s)	54, 475
MaeI	CTAG	1 cut(s)	201
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	2 cut(s)	233, 476
MalI	GATC	3 cut(s)	273, 417, 450
MboI	GATC	3 cut(s)	271, 415, 448
MboII	GAAGA	4 cut(s)	127, 168, 171, 281
MfeI	CAATTG	1 cut(s)	551
MmeI	TCCRAC	1 cut(s)	486
Mph1103I	ATGCAT	1 cut(s)	490
MroI	TCCGGA	2 cut(s)	217, 359
MseI	TTAA	4 cut(s)	192, 315, 369, 595
MspI	CCGG	2 cut(s)	218, 360
MunI	CAATTG	1 cut(s)	551
Mva1269I	GAATGC	1 cut(s)	433
MvnI	CGCG	1 cut(s)	406
MwoI	GCNNNNNNNGC	2 cut(s)	284, 289
NdeII	GATC	3 cut(s)	271, 415, 448
NlaIII	CATG	3 cut(s)	287, 357, 530
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	490
NspI	RCATGY	1 cut(s)	287
PaeI	GCATGC	1 cut(s)	287
PctI	GAATGC	1 cut(s)	433
PfeI	GAWTC	1 cut(s)	173
PflFI	GACNNNGTC	1 cut(s)	355
PkrI	GCNGC	5 cut(s)	16, 90, 187, 209, 226
Psp1406I	AACGTT	1 cut(s)	460
PspFI	CCCAGC	1 cut(s)	287
PspPI	GGNCC	2 cut(s)	357, 497
PsyI	GACNNNGTC	1 cut(s)	355
RsaI	GTAC	1 cut(s)	445
RsaNI	GTAC	1 cut(s)	444
SaqAI	TTAA	4 cut(s)	192, 315, 369, 595
SatI	GCNGC	5 cut(s)	15, 89, 186, 208, 225
Sau3AI	GATC	3 cut(s)	271, 415, 448
Sau96I	GGNCC	2 cut(s)	357, 497
SetI	ASST	4 cut(s)	16, 259, 338, 463
SfaNI	GCATC	2 cut(s)	54, 475
SinI	GGWCC	1 cut(s)	357
SphI	GCATGC	1 cut(s)	287
SsiI	CCGC	3 cut(s)	89, 404, 468
SspMI	CTAG	1 cut(s)	201
TaaI	ACNGT	3 cut(s)	31, 161, 476
TaiI	ACGT	1 cut(s)	463
TatI	WGTACW	1 cut(s)	443
TauI	GCSGC	1 cut(s)	91
TfiI	GAWTC	1 cut(s)	173
Tru1I	TTAA	4 cut(s)	192, 315, 369, 595
Tru9I	TTAA	4 cut(s)	192, 315, 369, 595
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	4 cut(s)	14, 185, 207, 224
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	5 cut(s)	44, 51, 57, 98, 515
Tth111I	GACNNNGTC	1 cut(s)	355
VpaK11BI	GGWCC	1 cut(s)	357
XapI	RAATTY	3 cut(s)	129, 165, 365
XceI	RCATGY	1 cut(s)	287
XspI	CTAG	1 cut(s)	201
Zsp2I	ATGCAT	1 cut(s)	490

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.