Rmu_sc0003608.1_g000019

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003608.1
OG0025566
Physical Location & Seq
Forward (+)
58367 .. 60028
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 936 bp
atgcacccaaggttgcttttttgctgctactgcttggcatttgatggaggcagcttgtcatggaaaacatttgagctggcggctcgggcttcttgtgtagagaagcaaacaaaatattgttttgtgactactaagcgagttgcagccaaggatgggattggtggttgttctgtattttttgtgtttaccgccaaagatgggatacttgatgtaactaaaggtagccactgggagctgatgatgattttgaaaacagtgagtgataatcaaagaaattgggtgcttcgtgagcggaccaattttgatgacccagggaaagagaattttgagctcgttaattctctctctccctcctctctccctccctcctctctccaaaaccacgacaaaactcttatagccctcttcgtcgtcacaccttcctcttcatccaccgcattccccataaagccttcgccacccttcgcctccgcctcaaaagcaaatccggcatccaatccaagcgccacttccgatacggttcattacaatccctccgatctgtcgacttggctggagagcatgatttcggagataactccacctctgaatttcgacccagtaatggcagcgcccccgccgctgaatcagctcgctagaagctctgttgtgccagaatcctccaccataacctcaatcgattttgccgatcaaaccatgaacacagagcaaatctctcagcccacgaatccagttcgaggactgctcgtcttccaattacgagctcaaggtcatacctggaaaagccattgtcagtcagacccagttcaattcttcccaagagagcccaaacggctcaaaccttcttcagatttctactccaccaccaccacttcttccctccaacccccatctccgtccccctccccaacaacgagtcaactagcccggtggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
DELLA GRAS

Protein Analysis

311

Amino Acids

34.2

Weight (kDa)

7.61

Isoelectric Point (pI)

55.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DELLA PF12041 165 - 195 8.7e-10 Transcriptional regulator DELLA protein N terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025566)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003608.1_g000019
rosa_samantha Rh5BG440200 Rh6AG104300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 292
AccI GTMKAC 1 cut(s) 545
AciI CCGC 7 cut(s) 80, 189, 292, 435, 471, 617, 620
AcsI RAATTY 2 cut(s) 322, 589
AcuI CTGAAG 1 cut(s) 831
AfiI CCNNNNNNNGG 4 cut(s) 153, 198, 604, 737
AgsI TTSAA 2 cut(s) 250, 809
AhdI GACNNNNNGTC 1 cut(s) 746
AjnI CCWGG 2 cut(s) 310, 776
AjuI GAANNNNNNNTTGG 2 cut(s) 493, 525
AluBI AGCT 7 cut(s) 54, 76, 235, 331, 631, 642, 764
AluI AGCT 7 cut(s) 54, 76, 235, 331, 631, 642, 764
Alw21I GWGCWC 2 cut(s) 333, 766
Ama87I CYCGRG 1 cut(s) 84
ApeKI GCWGC 4 cut(s) 24, 51, 143, 608
ApoI RAATTY 2 cut(s) 322, 589
AspLEI GCGC 2 cut(s) 506, 613
AspS9I GGNCC 1 cut(s) 294
AsuC2I CCSGG 1 cut(s) 928
AvaI CYCGRG 1 cut(s) 84
AvaII GGWCC 1 cut(s) 294
BanII GRGCYC 3 cut(s) 333, 766, 828
BbsI GAAGAC 1 cut(s) 742
Bbv12I GWGCWC 2 cut(s) 333, 766
BbvI GCAGC 4 cut(s) 11, 63, 155, 620
BccI CCATC 4 cut(s) 38, 146, 191, 898
BceAI ACGGC 1 cut(s) 848
BciT130I CCWGG 2 cut(s) 312, 778
BciVI GTATCC 1 cut(s) 195
BcnI CCSGG 1 cut(s) 928
BfaI CTAG 2 cut(s) 636, 923
BfoI RGCGCY 2 cut(s) 507, 614
BfuI GTATCC 1 cut(s) 195
BglI GCCNNNNNGGC 1 cut(s) 832
BisI GCNGC 6 cut(s) 25, 52, 81, 144, 609, 620
BlsI GCNGC 6 cut(s) 26, 53, 82, 145, 610, 621
Bme1390I CCNGG 3 cut(s) 312, 778, 928
Bme18I GGWCC 1 cut(s) 294
BmeRI GACNNNNNGTC 1 cut(s) 746
BmeT110I CYCGRG 1 cut(s) 84
BmgT120I GGNCC 1 cut(s) 294
BmrFI CCNGG 3 cut(s) 312, 778, 928
BmrI ACTGGG 3 cut(s) 238, 593, 797
BmsI GCATC 1 cut(s) 500
BmuI ACTGGG 3 cut(s) 238, 593, 797
BpiI GAAGAC 1 cut(s) 742
BplI GAGNNNNNCTC 4 cut(s) 698, 730, 729, 761
BpmI CTGGAG 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 750
BpuMI CCSGG 1 cut(s) 928
Bsa29I ATCGAT 1 cut(s) 678
BsaJI CCNNGG 4 cut(s) 8, 147, 310, 311
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bsc4I CCNNNNNNNGG 4 cut(s) 153, 198, 604, 737
Bse1I ACTGG 4 cut(s) 233, 599, 731, 803
BseBI CCWGG 2 cut(s) 312, 778
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 4 cut(s) 8, 147, 310, 311
BseGI GGATG 3 cut(s) 157, 428, 491
BseLI CCNNNNNNNGG 4 cut(s) 153, 198, 604, 737
BseMII CTCAG 1 cut(s) 731
BseNI ACTGG 4 cut(s) 233, 599, 731, 803
BseRI GAGGAG 2 cut(s) 343, 358
BseXI GCAGC 4 cut(s) 11, 63, 155, 620
BshVI ATCGAT 1 cut(s) 678
BsiHKAI GWGCWC 2 cut(s) 333, 766
BsiHKCI CYCGRG 1 cut(s) 84
BsiSI CCGG 2 cut(s) 488, 928
BslFI GGGAC 1 cut(s) 883
BslI CCNNNNNNNGG 4 cut(s) 153, 198, 604, 737
BsmFI GGGAC 1 cut(s) 883
BsmI GAATGC 1 cut(s) 437
BsoBI CYCGRG 1 cut(s) 84
Bsp1286I GDGCHC 3 cut(s) 333, 766, 828
Bsp143I GATC 2 cut(s) 538, 688
BspACI CCGC 7 cut(s) 80, 189, 292, 435, 471, 617, 620
BspCNI CTCAG 1 cut(s) 730
BspDI ATCGAT 1 cut(s) 678
BsrBI CCGCTC 1 cut(s) 292
BsrI ACTGG 4 cut(s) 233, 599, 731, 803
BssECI CCNNGG 4 cut(s) 8, 147, 310, 311
BssMI GATC 2 cut(s) 538, 688
BssT1I CCWWGG 2 cut(s) 8, 147
Bst2UI CCWGG 2 cut(s) 312, 778
Bst4CI ACNGT 2 cut(s) 256, 520
Bst6I CTCTTC 2 cut(s) 410, 430
BstC8I GCNNGC 2 cut(s) 78, 633
BstDEI CTNAG 2 cut(s) 132, 717
BstF5I GGATG 3 cut(s) 157, 428, 491
BstH2I RGCGCY 2 cut(s) 507, 614
BstHHI GCGC 2 cut(s) 506, 613
BstKTI GATC 2 cut(s) 541, 691
BstMBI GATC 2 cut(s) 538, 688
BstMWI GCNNNNNNNGC 8 cut(s) 30, 86, 289, 479, 488, 619, 628, 832
BstNI CCWGG 2 cut(s) 312, 778
BstSCI CCNGG 3 cut(s) 310, 776, 926
BstV1I GCAGC 4 cut(s) 11, 63, 155, 620
BstV2I GAAGAC 1 cut(s) 742
Bsu15I ATCGAT 1 cut(s) 678
BsuI GTATCC 1 cut(s) 195
BsuTUI ATCGAT 1 cut(s) 678
BtsCI GGATG 3 cut(s) 157, 428, 491
BtsIMutI CAGTG 2 cut(s) 226, 261
Cac8I GCNNGC 2 cut(s) 78, 633
CfoI GCGC 2 cut(s) 506, 613
Cfr13I GGNCC 1 cut(s) 294
ClaI ATCGAT 1 cut(s) 678
CviAII CATG 3 cut(s) 60, 562, 697
DdeI CTNAG 2 cut(s) 132, 717
DpnI GATC 2 cut(s) 540, 690
DpnII GATC 2 cut(s) 538, 688
DriI GACNNNNNGTC 1 cut(s) 746
Eam1104I CTCTTC 2 cut(s) 410, 430
Eam1105I GACNNNNNGTC 1 cut(s) 746
EarI CTCTTC 2 cut(s) 410, 430
EciI GGCGGA 1 cut(s) 460
Ecl136II GAGCTC 2 cut(s) 331, 764
Eco130I CCWWGG 2 cut(s) 8, 147
Eco24I GRGCYC 3 cut(s) 333, 766, 828
Eco47I GGWCC 1 cut(s) 294
Eco53kI GAGCTC 2 cut(s) 331, 764
Eco57I CTGAAG 1 cut(s) 831
Eco88I CYCGRG 1 cut(s) 84
EcoICRI GAGCTC 2 cut(s) 331, 764
EcoRII CCWGG 2 cut(s) 310, 776
EcoT14I CCWWGG 2 cut(s) 8, 147
EcoT38I GRGCYC 3 cut(s) 333, 766, 828
ErhI CCWWGG 2 cut(s) 8, 147
FaeI CATG 3 cut(s) 63, 565, 700
FaiI YATR 7 cut(s) 61, 398, 446, 563, 668, 698, 774
FalI AAGNNNNNCTT 2 cut(s) 493, 525
FaqI GGGAC 1 cut(s) 883
FatI CATG 3 cut(s) 59, 561, 696
FauI CCCGC 1 cut(s) 624
FblI GTMKAC 1 cut(s) 545
Fnu4HI GCNGC 6 cut(s) 25, 52, 81, 144, 609, 620
FokI GGATG 3 cut(s) 164, 415, 478
FriOI GRGCYC 3 cut(s) 333, 766, 828
Fsp4HI GCNGC 6 cut(s) 25, 52, 81, 144, 609, 620
FspBI CTAG 2 cut(s) 636, 923
GlaI GCGC 2 cut(s) 505, 612
GluI GCNGC 6 cut(s) 25, 52, 81, 144, 609, 620
GsuI CTGGAG 1 cut(s) 575
HaeII RGCGCY 2 cut(s) 507, 614
HapII CCGG 2 cut(s) 488, 928
HhaI GCGC 2 cut(s) 506, 613
Hin1II CATG 3 cut(s) 63, 565, 700
Hin6I GCGC 2 cut(s) 504, 611
HinP1I GCGC 2 cut(s) 504, 611
HincII GTYRAC 2 cut(s) 546, 920
HindII GTYRAC 2 cut(s) 546, 920
HinfI GANTC 4 cut(s) 625, 656, 727, 916
HpaII CCGG 2 cut(s) 488, 928
Hpy166II GTNNAC 3 cut(s) 186, 546, 920
Hpy188I TCNGA 6 cut(s) 514, 538, 571, 588, 799, 850
Hpy188III TCNNGA 1 cut(s) 287
Hpy8I GTNNAC 3 cut(s) 186, 546, 920
Hpy99I CGWCG 1 cut(s) 413
HpyAV CCTTC 4 cut(s) 429, 462, 472, 852
HpyCH4III ACNGT 2 cut(s) 256, 520
HpyCH4V TGCA 2 cut(s) 4, 143
HpyF10VI GCNNNNNNNGC 8 cut(s) 30, 86, 289, 479, 488, 619, 628, 832
HpyF3I CTNAG 2 cut(s) 132, 717
Hsp92II CATG 3 cut(s) 63, 565, 700
HspAI GCGC 2 cut(s) 504, 611
Kzo9I GATC 2 cut(s) 538, 688
LmnI GCTCC 1 cut(s) 232
Lsp1109I GCAGC 4 cut(s) 11, 63, 155, 620
LweI GCATC 1 cut(s) 500
MaeI CTAG 2 cut(s) 636, 923
MaeIII GTNAC 3 cut(s) 124, 211, 412
MalI GATC 2 cut(s) 540, 690
MbiI CCGCTC 1 cut(s) 292
MboI GATC 2 cut(s) 538, 688
MboII GAAGA 6 cut(s) 397, 417, 742, 805, 837, 867
MhlI GDGCHC 3 cut(s) 333, 766, 828
MluCI AATT 7 cut(s) 274, 298, 322, 337, 589, 755, 809
MlyI GAGTC 1 cut(s) 925
MmeI TCCRAC 1 cut(s) 907
MseI TTAA 1 cut(s) 336
MspA1I CMGCKG 1 cut(s) 622
MspI CCGG 2 cut(s) 488, 928
MspR9I CCNGG 3 cut(s) 312, 778, 928
Mva1269I GAATGC 1 cut(s) 437
MvaI CCWGG 2 cut(s) 312, 778
MwoI GCNNNNNNNGC 8 cut(s) 30, 86, 289, 479, 488, 619, 628, 832
NciI CCSGG 1 cut(s) 928
NdeII GATC 2 cut(s) 538, 688
NlaIII CATG 3 cut(s) 63, 565, 700
NmuCI GTSAC 2 cut(s) 124, 412
PasI CCCWGGG 1 cut(s) 311
PcsI WCGNNNNNNNCGW 1 cut(s) 684
PctI GAATGC 1 cut(s) 437
PfeI GAWTC 3 cut(s) 625, 656, 727
PkrI GCNGC 6 cut(s) 26, 53, 82, 145, 610, 621
PleI GAGTC 1 cut(s) 924
PpsI GAGTC 1 cut(s) 924
Psp124BI GAGCTC 2 cut(s) 333, 766
Psp6I CCWGG 2 cut(s) 310, 776
PspGI CCWGG 2 cut(s) 310, 776
PspPI GGNCC 1 cut(s) 294
SacI GAGCTC 2 cut(s) 333, 766
SalI GTCGAC 1 cut(s) 544
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 6 cut(s) 25, 52, 81, 144, 609, 620
Sau3AI GATC 2 cut(s) 538, 688
Sau96I GGNCC 1 cut(s) 294
SchI GAGTC 1 cut(s) 925
ScrFI CCNGG 3 cut(s) 312, 778, 928
SduI GDGCHC 3 cut(s) 333, 766, 828
SfaNI GCATC 1 cut(s) 500
SinI GGWCC 1 cut(s) 294
SmlI CTYRAG 1 cut(s) 765
SmoI CTYRAG 1 cut(s) 765
Sse9I AATT 7 cut(s) 274, 298, 322, 337, 589, 755, 809
SsiI CCGC 7 cut(s) 80, 189, 292, 435, 471, 617, 620
SspI AATATT 1 cut(s) 116
SspMI CTAG 2 cut(s) 636, 923
SstI GAGCTC 2 cut(s) 333, 766
StyD4I CCNGG 3 cut(s) 310, 776, 926
StyI CCWWGG 2 cut(s) 8, 147
TaaI ACNGT 2 cut(s) 256, 520
TaqI TCGA 4 cut(s) 545, 594, 678, 736
TasI AATT 7 cut(s) 274, 298, 322, 337, 589, 755, 809
TauI GCSGC 2 cut(s) 83, 622
TfiI GAWTC 3 cut(s) 625, 656, 727
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 2 cut(s) 233, 261
TseFI GTSAC 2 cut(s) 124, 412
TseI GCWGC 4 cut(s) 24, 51, 143, 608
Tsp45I GTSAC 2 cut(s) 124, 412
TspDTI ATGAA 3 cut(s) 417, 512, 713
TspGWI ACGGA 1 cut(s) 885
TspRI CASTG 2 cut(s) 233, 261
VpaK11BI GGWCC 1 cut(s) 294
XapI RAATTY 2 cut(s) 322, 589
XmiI GTMKAC 1 cut(s) 545
XspI CTAG 2 cut(s) 636, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.