Rh5BG440200

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0025566
Physical Location & Seq
Forward (+)
70805102 .. 70805434
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG440200.1

Sequence Viewer

Length: 333 bp
ATGGCAGCGCCCCCGCCGCTTAATCAGCTCGCTAGAAGCTCTGTTGTGCCGGAATCCTCCACCCTAACCTCAATCGATTTTGCCGATCAAACCATGAACACAGAGCAAATCTCTCAGCCCACGAATCCAGTTCGAGGACTGCTCGTCTTCCAATTACGAGCTCAAGGCCATACCTGGAACAGCCATTGTCAGCCAGACCCAGTTCAATTCTTCCCAAGAGAGCCCAAACGGCTCAAACCTTCTTCAGATTTCTACTCCACCACCACCACTTCTTCCCTCCAACCCCCATCTCTGTCCCCCTCCCCAACAACGAGTCAACTCGCCCAGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000910 GO:0001067 GO:0001101 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006808 GO:0006810 GO:0006950 GO:0006970 GO:0006972 GO:0007049 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009863 GO:0009867 GO:0009889 GO:0009892 GO:0009893 GO:0009894 GO:0009937 GO:0009938 GO:0009966 GO:0009968 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010218 GO:0010232 GO:0010233 GO:0010453 GO:0010454 GO:0010468 GO:0010476 GO:0010556 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010646 GO:0010648 GO:0014070 GO:0019219 GO:0019222 GO:0022402 GO:0022414 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031326 GO:0032501 GO:0032870 GO:0033206 GO:0033993 GO:0035690 GO:0040008 GO:0042176 GO:0042221 GO:0042493 GO:0042538 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045596 GO:0045926 GO:0046677 GO:0048518 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048638 GO:0048640 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051171 GO:0051179 GO:0051234 GO:0051239 GO:0051241 GO:0051246 GO:0051252 GO:0051301 GO:0051321 GO:0051716 GO:0060255 GO:0061640 GO:0065007 GO:0070887 GO:0071229 GO:0071236 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071407 GO:0071446 GO:0071495 GO:0080050 GO:0080090 GO:0097159 GO:0097305 GO:0140110 GO:1900032 GO:1900033 GO:1900140 GO:1901363 GO:1901700 GO:1901701 GO:1903046 GO:1903506 GO:1905613 GO:1905614 GO:1905622 GO:2000024 GO:2000026 GO:2000033 GO:2000034 GO:2000112 GO:2000241 GO:2000377 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
DELLA GRAS

Protein Analysis

110

Amino Acids

12.14

Weight (kDa)

6.71

Isoelectric Point (pI)

66.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025566)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003608.1_g000019
rosa_samantha Rh5BG440200 Rh6AG104300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 14, 17
AcuI CTGAAG 1 cut(s) 228
AfiI CCNNNNNNNGG 1 cut(s) 134
AgsI TTSAA 1 cut(s) 206
AhdI GACNNNNNGTC 1 cut(s) 143
AjnI CCWGG 1 cut(s) 173
AluBI AGCT 3 cut(s) 28, 39, 161
AluI AGCT 3 cut(s) 28, 39, 161
Alw21I GWGCWC 1 cut(s) 163
AoxI GGCC 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 10
BanII GRGCYC 2 cut(s) 163, 225
BbsI GAAGAC 1 cut(s) 139
Bbv12I GWGCWC 1 cut(s) 163
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 245
BciT130I CCWGG 1 cut(s) 175
BfaI CTAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 11
BglI GCCNNNNNGGC 1 cut(s) 229
BisI GCNGC 2 cut(s) 6, 17
BlsI GCNGC 2 cut(s) 7, 18
Bme1390I CCNGG 1 cut(s) 175
BmeRI GACNNNNNGTC 1 cut(s) 143
BmrFI CCNGG 1 cut(s) 175
BmrI ACTGGG 2 cut(s) 194, 319
BmuI ACTGGG 2 cut(s) 194, 319
BpiI GAAGAC 1 cut(s) 139
BplI GAGNNNNNCTC 4 cut(s) 95, 127, 126, 158
BpuEI CTTGAG 1 cut(s) 147
Bsa29I ATCGAT 1 cut(s) 75
Bsc4I CCNNNNNNNGG 1 cut(s) 134
Bse1I ACTGG 3 cut(s) 128, 200, 325
BseBI CCWGG 1 cut(s) 175
BseCI ATCGAT 1 cut(s) 75
BseLI CCNNNNNNNGG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 3 cut(s) 128, 200, 325
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 168
BshVI ATCGAT 1 cut(s) 75
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 1 cut(s) 50
BslFI GGGAC 1 cut(s) 280
BslI CCNNNNNNNGG 1 cut(s) 134
BsmFI GGGAC 1 cut(s) 280
BsnI GGCC 1 cut(s) 168
Bsp1286I GDGCHC 2 cut(s) 163, 225
Bsp143I GATC 1 cut(s) 85
BspACI CCGC 2 cut(s) 14, 17
BspANI GGCC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 127
BspDI ATCGAT 1 cut(s) 75
BsrI ACTGG 3 cut(s) 128, 200, 325
BssMI GATC 1 cut(s) 85
Bst2UI CCWGG 1 cut(s) 175
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 1 cut(s) 114
BstH2I RGCGCY 1 cut(s) 11
BstHHI GCGC 1 cut(s) 10
BstKTI GATC 1 cut(s) 88
BstMBI GATC 1 cut(s) 85
BstMWI GCNNNNNNNGC 3 cut(s) 16, 25, 229
BstNI CCWGG 1 cut(s) 175
BstSCI CCNGG 1 cut(s) 173
BstV1I GCAGC 1 cut(s) 17
BstV2I GAAGAC 1 cut(s) 139
Bsu15I ATCGAT 1 cut(s) 75
BsuRI GGCC 1 cut(s) 168
BsuTUI ATCGAT 1 cut(s) 75
BtsIMutI CAGTG 1 cut(s) 332
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 10
ClaI ATCGAT 1 cut(s) 75
CviAII CATG 1 cut(s) 94
CviJI RGCY 9 cut(s) 28, 39, 118, 161, 168, 183, 193, 223, 232
CviKI_1 RGCY 9 cut(s) 28, 39, 118, 161, 168, 183, 193, 223, 232
DdeI CTNAG 1 cut(s) 114
DpnI GATC 1 cut(s) 87
DpnII GATC 1 cut(s) 85
DriI GACNNNNNGTC 1 cut(s) 143
Eam1105I GACNNNNNGTC 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 161
Eco24I GRGCYC 2 cut(s) 163, 225
Eco53kI GAGCTC 1 cut(s) 161
Eco57I CTGAAG 1 cut(s) 228
EcoICRI GAGCTC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 173
EcoT38I GRGCYC 2 cut(s) 163, 225
FaeI CATG 1 cut(s) 97
FaiI YATR 2 cut(s) 95, 171
FaqI GGGAC 1 cut(s) 280
FatI CATG 1 cut(s) 93
FauI CCCGC 1 cut(s) 21
Fnu4HI GCNGC 2 cut(s) 6, 17
FriOI GRGCYC 2 cut(s) 163, 225
Fsp4HI GCNGC 2 cut(s) 6, 17
FspBI CTAG 1 cut(s) 33
GlaI GCGC 1 cut(s) 9
GluI GCNGC 2 cut(s) 6, 17
HaeII RGCGCY 1 cut(s) 11
HaeIII GGCC 1 cut(s) 168
HapII CCGG 1 cut(s) 50
HhaI GCGC 1 cut(s) 10
Hin1II CATG 1 cut(s) 97
Hin6I GCGC 1 cut(s) 8
HinP1I GCGC 1 cut(s) 8
HincII GTYRAC 1 cut(s) 317
HindII GTYRAC 1 cut(s) 317
HinfI GANTC 3 cut(s) 53, 124, 313
HpaII CCGG 1 cut(s) 50
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 1 cut(s) 247
Hpy8I GTNNAC 1 cut(s) 317
HpyAV CCTTC 1 cut(s) 249
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 25, 229
HpyF3I CTNAG 1 cut(s) 114
Hsp92II CATG 1 cut(s) 97
HspAI GCGC 1 cut(s) 8
Kzo9I GATC 1 cut(s) 85
LpnPI CCDG 6 cut(s) 63, 141, 160, 187, 207, 213
Lsp1109I GCAGC 1 cut(s) 17
MaeI CTAG 1 cut(s) 33
MalI GATC 1 cut(s) 87
MboI GATC 1 cut(s) 85
MboII GAAGA 4 cut(s) 139, 202, 234, 264
MhlI GDGCHC 2 cut(s) 163, 225
MluCI AATT 2 cut(s) 152, 206
MlyI GAGTC 1 cut(s) 322
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 5 cut(s) 67, 79, 128, 287, 310
MseI TTAA 1 cut(s) 21
MspI CCGG 1 cut(s) 50
MspR9I CCNGG 1 cut(s) 175
MvaI CCWGG 1 cut(s) 175
MwoI GCNNNNNNNGC 3 cut(s) 16, 25, 229
NdeII GATC 1 cut(s) 85
NlaIII CATG 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PfeI GAWTC 2 cut(s) 53, 124
PkrI GCNGC 2 cut(s) 7, 18
PleI GAGTC 1 cut(s) 321
PpsI GAGTC 1 cut(s) 321
Psp124BI GAGCTC 1 cut(s) 163
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 163
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 2 cut(s) 6, 17
Sau3AI GATC 1 cut(s) 85
SchI GAGTC 1 cut(s) 322
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 2 cut(s) 163, 225
SetI ASST 6 cut(s) 30, 41, 71, 163, 176, 241
SmlI CTYRAG 1 cut(s) 162
SmoI CTYRAG 1 cut(s) 162
Sse9I AATT 2 cut(s) 152, 206
SsiI CCGC 2 cut(s) 14, 17
SspMI CTAG 1 cut(s) 33
SstI GAGCTC 1 cut(s) 163
StyD4I CCNGG 1 cut(s) 173
TaqI TCGA 2 cut(s) 75, 133
TasI AATT 2 cut(s) 152, 206
TauI GCSGC 1 cut(s) 19
TfiI GAWTC 2 cut(s) 53, 124
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TscAI CASTG 1 cut(s) 332
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 110
TspRI CASTG 1 cut(s) 332
XspI CTAG 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.