Rmu_sc0003610.1_g000017

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003610.1
OG0018040
Physical Location & Seq
Forward (+)
68168 .. 69699
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
atgtgtttcggggtgtcttccccttcgagccctcgatcgaaacccaagggtagatctaaacgacatgattcatgtgccgtcaacactagtcttgctgttgaagagcattcaacaacagaccttctgaacagatatagtagctttagcaagggtgagttgagtgctacggaagccagcctgaaccatatggttgaagagtcttctgaggactcaaaatctgaggaatcgattggcaacaagataatggtggttgtggactcgagcctggaagctaagggagctcttgaatgggcactatcccacactgcacaaacccatgataccattttgcttcttcatcttgctaatgctgcagacacaaatgagaagtttgatggtataatggcttttgaacttcttcacagtttgaaaaaactttgtcaaatcagcaagcctggggtgctagtggaggtagcattggttgaagttgaagaagggaaggaaaagggtcagatgatagtggaagaagcaaagagacaaggggtgtctctccttgttcttgggcaagaaagaaagaggttgacatggtggcagctaggttgtagtgggggcggaggtgagggcgttggcgaggttgtggtggagtactgcatacaaaatgctgcttgcatgacggttgcagtgaggaaaaagaacagcaatgggggaggctacttgatcagcaccaagcttcacaagaatttctggcttctagcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

245

Amino Acids

26.58

Weight (kDa)

6.09

Isoelectric Point (pI)

38.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 80 - 222 3.5e-11 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018040)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g13490
rosa_chinensis RchiOBHm_Chr7g0183581
rosa_laevigata RLG00000005040
rosa_multiflora Rmu_sc0003610.1_g000017
rosa_roxburghii Rroxscaffold_3G00270390
rosa_rugosa Rorug06G0458600
rosa_samantha Rh7AG059700 Rh7BG059400 Rh7CG061400 Rh7DG059800
rosa_wichuraiana Rw7G004900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 591
AcsI RAATTY 1 cut(s) 718
AfaI GTAC 1 cut(s) 626
AgsI TTSAA 8 cut(s) 101, 111, 194, 287, 392, 409, 464, 470
AhlI ACTAGT 1 cut(s) 86
AjnI CCWGG 2 cut(s) 264, 433
AluBI AGCT 6 cut(s) 141, 272, 281, 574, 709, 734
AluI AGCT 6 cut(s) 141, 272, 281, 574, 709, 734
Alw21I GWGCWC 1 cut(s) 283
Alw26I GTCTC 2 cut(s) 508, 531
Ama87I CYCGRG 1 cut(s) 259
ApeKI GCWGC 3 cut(s) 350, 571, 641
ApoI RAATTY 1 cut(s) 718
Asp700I GAANNNNTTC 1 cut(s) 396
AsuHPI GGTGA 2 cut(s) 164, 608
AvaI CYCGRG 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 295
BanII GRGCYC 2 cut(s) 32, 283
BbsI GAAGAC 2 cut(s) 9, 192
Bbv12I GWGCWC 1 cut(s) 283
BbvI GCAGC 3 cut(s) 337, 583, 628
BccI CCATC 1 cut(s) 368
BceAI ACGGC 1 cut(s) 62
BciT130I CCWGG 2 cut(s) 266, 435
BclI TGATCA 1 cut(s) 696
BcoDI GTCTC 2 cut(s) 508, 531
BcuI ACTAGT 1 cut(s) 86
BfaI CTAG 4 cut(s) 87, 443, 575, 731
BfmI CTRYAG 1 cut(s) 351
BglII AGATCT 1 cut(s) 53
BisI GCNGC 3 cut(s) 351, 572, 642
BlsI GCNGC 3 cut(s) 352, 573, 643
BmcAI AGTACT 1 cut(s) 626
Bme1390I CCNGG 2 cut(s) 266, 435
BmeT110I CYCGRG 1 cut(s) 259
BmrFI CCNGG 2 cut(s) 266, 435
BpiI GAAGAC 2 cut(s) 9, 192
Bpu10I CCTNAGC 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 227
BsaJI CCNNGG 2 cut(s) 45, 434
Bse3DI GCAATG 1 cut(s) 685
BseBI CCWGG 2 cut(s) 266, 435
BseCI ATCGAT 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 45, 434
BseMI GCAATG 1 cut(s) 685
BseMII CTCAG 2 cut(s) 195, 210
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 3 cut(s) 337, 583, 628
BsgI GTGCAG 1 cut(s) 291
Bsh1285I CGRYCG 1 cut(s) 38
BshVI ATCGAT 1 cut(s) 227
BsiEI CGRYCG 1 cut(s) 38
BsiHKAI GWGCWC 1 cut(s) 283
BsiHKCI CYCGRG 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 508, 531
BsmI GAATGC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 259
Bsp1286I GDGCHC 3 cut(s) 32, 283, 295
Bsp143I GATC 3 cut(s) 35, 53, 696
BspACI CCGC 1 cut(s) 591
BspCNI CTCAG 2 cut(s) 196, 211
BspDI ATCGAT 1 cut(s) 227
BspMAI CTGCAG 1 cut(s) 355
BspQI GCTCTTC 1 cut(s) 96
BsrDI GCAATG 1 cut(s) 685
BssECI CCNNGG 2 cut(s) 45, 434
BssMI GATC 3 cut(s) 35, 53, 696
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 2 cut(s) 266, 435
Bst4CI ACNGT 2 cut(s) 404, 655
Bst6I CTCTTC 2 cut(s) 96, 189
BstC8I GCNNGC 3 cut(s) 175, 431, 646
BstDEI CTNAG 3 cut(s) 204, 219, 273
BstKTI GATC 3 cut(s) 38, 56, 699
BstMAI GTCTC 2 cut(s) 508, 531
BstMBI GATC 3 cut(s) 35, 53, 696
BstMCI CGRYCG 1 cut(s) 38
BstMWI GCNNNNNNNGC 4 cut(s) 170, 278, 350, 439
BstNI CCWGG 2 cut(s) 266, 435
BstSCI CCNGG 2 cut(s) 264, 433
BstSFI CTRYAG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 3 cut(s) 337, 583, 628
BstV2I GAAGAC 2 cut(s) 9, 192
BstX2I RGATCY 1 cut(s) 53
BstYI RGATCY 1 cut(s) 53
Bsu15I ATCGAT 1 cut(s) 227
BsuTUI ATCGAT 1 cut(s) 227
BtsI GCAGTG 2 cut(s) 303, 666
BtsIMutI CAGTG 2 cut(s) 303, 666
Cac8I GCNNGC 3 cut(s) 175, 431, 646
ClaI ATCGAT 1 cut(s) 227
Csp6I GTAC 1 cut(s) 625
CviAII CATG 5 cut(s) 65, 72, 317, 564, 649
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 3 cut(s) 204, 219, 273
DpnI GATC 3 cut(s) 37, 55, 698
DpnII GATC 3 cut(s) 35, 53, 696
Eam1104I CTCTTC 2 cut(s) 96, 189
EarI CTCTTC 2 cut(s) 96, 189
EciI GGCGGA 1 cut(s) 606
Ecl136II GAGCTC 1 cut(s) 281
Eco130I CCWWGG 1 cut(s) 45
Eco24I GRGCYC 2 cut(s) 32, 283
Eco53kI GAGCTC 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 259
EcoICRI GAGCTC 1 cut(s) 281
EcoRII CCWGG 2 cut(s) 264, 433
EcoT14I CCWWGG 1 cut(s) 45
EcoT38I GRGCYC 2 cut(s) 32, 283
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 5 cut(s) 68, 75, 320, 567, 652
FatI CATG 5 cut(s) 64, 71, 316, 563, 648
FauNDI CATATG 1 cut(s) 186
FbaI TGATCA 1 cut(s) 696
Fnu4HI GCNGC 3 cut(s) 351, 572, 642
FriOI GRGCYC 2 cut(s) 32, 283
Fsp4HI GCNGC 3 cut(s) 351, 572, 642
FspBI CTAG 4 cut(s) 87, 443, 575, 731
GluI GCNGC 3 cut(s) 351, 572, 642
Hin1II CATG 5 cut(s) 68, 75, 320, 567, 652
HincII GTYRAC 2 cut(s) 82, 561
HindII GTYRAC 2 cut(s) 82, 561
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 5 cut(s) 68, 197, 209, 224, 257
HphI GGTGA 2 cut(s) 164, 608
Hpy166II GTNNAC 3 cut(s) 82, 256, 561
Hpy188I TCNGA 4 cut(s) 126, 205, 220, 492
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 3 cut(s) 82, 256, 561
HpyAV CCTTC 4 cut(s) 33, 131, 467, 472
HpyCH4III ACNGT 2 cut(s) 404, 655
HpyCH4V TGCA 5 cut(s) 308, 353, 630, 648, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 278, 350, 439
HpyF3I CTNAG 3 cut(s) 204, 219, 273
Hsp92II CATG 5 cut(s) 68, 75, 320, 567, 652
Ksp22I TGATCA 1 cut(s) 696
Kzo9I GATC 3 cut(s) 35, 53, 696
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 278
LpnPI CCDG 7 cut(s) 187, 191, 251, 278, 420, 447, 709
Lsp1109I GCAGC 3 cut(s) 337, 583, 628
MaeI CTAG 4 cut(s) 87, 443, 575, 731
MalI GATC 3 cut(s) 37, 55, 698
MboI GATC 3 cut(s) 35, 53, 696
MboII GAAGA 8 cut(s) 9, 113, 192, 206, 326, 389, 482, 515
MflI RGATCY 1 cut(s) 53
MhlI GDGCHC 3 cut(s) 32, 283, 295
MluCI AATT 1 cut(s) 718
MlyI GAGTC 3 cut(s) 203, 206, 251
MroXI GAANNNNTTC 1 cut(s) 396
MspR9I CCNGG 2 cut(s) 266, 435
Mva1269I GAATGC 1 cut(s) 106
MvaI CCWGG 2 cut(s) 266, 435
MwoI GCNNNNNNNGC 4 cut(s) 170, 278, 350, 439
NdeI CATATG 1 cut(s) 186
NdeII GATC 3 cut(s) 35, 53, 696
NlaIII CATG 5 cut(s) 68, 75, 320, 567, 652
PaeR7I CTCGAG 1 cut(s) 259
PciSI GCTCTTC 1 cut(s) 96
PctI GAATGC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 396
PfeI GAWTC 2 cut(s) 68, 224
PkrI GCNGC 3 cut(s) 352, 573, 643
Ple19I CGATCG 1 cut(s) 38
PleI GAGTC 3 cut(s) 203, 205, 251
PpsI GAGTC 3 cut(s) 203, 205, 251
Psp124BI GAGCTC 1 cut(s) 283
Psp6I CCWGG 2 cut(s) 264, 433
PspGI CCWGG 2 cut(s) 264, 433
PspXI VCTCGAGB 1 cut(s) 259
PstI CTGCAG 1 cut(s) 355
PsuI RGATCY 1 cut(s) 53
PvuI CGATCG 1 cut(s) 38
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
SacI GAGCTC 1 cut(s) 283
SapI GCTCTTC 1 cut(s) 96
SatI GCNGC 3 cut(s) 351, 572, 642
Sau3AI GATC 3 cut(s) 35, 53, 696
ScaI AGTACT 1 cut(s) 626
SchI GAGTC 3 cut(s) 203, 206, 251
ScrFI CCNGG 2 cut(s) 266, 435
SduI GDGCHC 3 cut(s) 32, 283, 295
SfcI CTRYAG 1 cut(s) 351
Sfr274I CTCGAG 1 cut(s) 259
SlaI CTCGAG 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SpeI ACTAGT 1 cut(s) 86
Sse9I AATT 1 cut(s) 718
SsiI CCGC 1 cut(s) 591
SspMI CTAG 4 cut(s) 87, 443, 575, 731
SstI GAGCTC 1 cut(s) 283
StyD4I CCNGG 2 cut(s) 264, 433
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 404, 655
TaqI TCGA 5 cut(s) 26, 34, 38, 227, 260
TasI AATT 1 cut(s) 718
TatI WGTACW 1 cut(s) 624
TfiI GAWTC 2 cut(s) 68, 224
TscAI CASTG 2 cut(s) 310, 666
TseI GCWGC 3 cut(s) 350, 571, 641
TspDTI ATGAA 2 cut(s) 60, 326
TspGWI ACGGA 1 cut(s) 182
TspRI CASTG 2 cut(s) 310, 666
XapI RAATTY 1 cut(s) 718
XhoI CTCGAG 1 cut(s) 259
XmnI GAANNNNTTC 1 cut(s) 396
XspI CTAG 4 cut(s) 87, 443, 575, 731
ZrmI AGTACT 1 cut(s) 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.