Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003630.1

Orthogroup ID

OG0031275

Physical Location & Seq

Genomic Coordinates Reverse (-)

101003 .. 101863

Gene Structure 861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

atggcttttccttgtaccaagtcctttaacatagtccaaagactttggcgtgtgcttcctctgctcatcatcatcatcatcatcactctctccgatggagctgaaactgaaaatgagaaaactgctatcaatgttggagcaatcgttaatctgaacactcatatgggtaaagaacagaaaactgctatggatattgcagctgaaaatttcaacagcctttcaaagactaatagcctaatccttcatttccgacattctgacagagatcccttaattgctgcatcttcggctgaggagttgataaaagacaagaaggtaaaactgataattggcatggagacttggcaggaagcagctctagtagctgatgtggggaaccgatctcaagttccggtaatttcatttgcagcacctactatatcgccacctctaatgcaacacgaatggccatttttgattcgcgtggcaagcgatggtgctgctcaaatgaaatgcatcgcagatattgtttctttgtacacttggaaaagggttattgttatataccaggataacggttatggtggtgctactgggatgctagttgttttatctgaggctctccaagacgttggctcaaagattgagcatcatttggttctcccacgggtttcttctctgtctaatctgacgcgagcggaagtaaccctaggtttacaagcaataaacctaaaacaacgattctggagtccaccagagataaaagagaaaactctcaattttgattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

255

Amino Acids

28.24

Weight (kDa)

6.6

Isoelectric Point (pI)

29.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	57 - 191	1e-07	Periplasmic binding protein
ANF_receptor	PF01094	60 - 225	6.9e-21	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031275)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003630.1_g000028
rosa_samantha	Rh5DG129100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	677
AccII	CGCG	2 cut(s)	462, 673
AciI	CCGC	1 cut(s)	677
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	446
AcsI	RAATTY	1 cut(s)	205
AfaI	GTAC	2 cut(s)	16, 518
AgsI	TTSAA	2 cut(s)	211, 222
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	4 cut(s)	101, 200, 356, 365
AluI	AGCT	4 cut(s)	101, 200, 356, 365
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	446
ApeKI	GCWGC	5 cut(s)	197, 278, 353, 407, 479
ApoI	RAATTY	1 cut(s)	205
AspA2I	CCTAGG	1 cut(s)	688
AvrII	CCTAGG	1 cut(s)	688
BalI	TGGCCA	1 cut(s)	448
BbvCI	CCTCAGC	1 cut(s)	291
BbvI	GCAGC	5 cut(s)	209, 265, 365, 419, 466
BccI	CCATC	2 cut(s)	89, 467
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BciT130I	CCWGG	1 cut(s)	548
BcoDI	GTCTC	1 cut(s)	332
BfaI	CTAG	3 cut(s)	359, 581, 689
BisI	GCNGC	5 cut(s)	198, 279, 354, 408, 480
BlnI	CCTAGG	1 cut(s)	688
BlsI	GCNGC	5 cut(s)	199, 280, 355, 409, 481
Bme1390I	CCNGG	1 cut(s)	548
BmiI	GGNNCC	1 cut(s)	377
BmrFI	CCNGG	1 cut(s)	548
BmrI	ACTGGG	1 cut(s)	582
BmsI	GCATC	4 cut(s)	290, 504, 567, 637
BmuI	ACTGGG	1 cut(s)	582
BpmI	CTGGAG	1 cut(s)	745
Bpu10I	CCTNAGC	1 cut(s)	291
BpuEI	CTTGAG	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	644, 688
BsaWI	WCCGGW	1 cut(s)	391
BsaXI	ACNNNNNCTCC	2 cut(s)	129, 159
Bse1I	ACTGG	1 cut(s)	577
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	2 cut(s)	644, 688
BseGI	GGATG	1 cut(s)	582
BseMII	CTCAG	2 cut(s)	282, 585
BseNI	ACTGG	1 cut(s)	577
BseRI	GAGGAG	1 cut(s)	308
BseXI	GCAGC	5 cut(s)	209, 265, 365, 419, 466
Bsh1236I	CGCG	2 cut(s)	462, 673
BshFI	GGCC	1 cut(s)	448
BsiSI	CCGG	1 cut(s)	392
BsmAI	GTCTC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	448
Bsp1407I	TGTACA	1 cut(s)	516
Bsp143I	GATC	2 cut(s)	265, 380
BspACI	CCGC	1 cut(s)	677
BspANI	GGCC	1 cut(s)	448
BspCNI	CTCAG	2 cut(s)	283, 586
BspFNI	CGCG	2 cut(s)	462, 673
BspLI	GGNNCC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	260
BsrBI	CCGCTC	1 cut(s)	677
BsrGI	TGTACA	1 cut(s)	516
BsrI	ACTGG	1 cut(s)	577
BssECI	CCNNGG	2 cut(s)	644, 688
BssMI	GATC	2 cut(s)	265, 380
BssT1I	CCWWGG	1 cut(s)	688
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	1 cut(s)	557
BstAUI	TGTACA	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	469, 675
BstDEI	CTNAG	2 cut(s)	291, 594
BstDSI	CCRYGG	1 cut(s)	644
BstF5I	GGATG	1 cut(s)	582
BstFNI	CGCG	2 cut(s)	462, 673
BstKTI	GATC	2 cut(s)	268, 383
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	2 cut(s)	265, 380
BstMWI	GCNNNNNNNGC	4 cut(s)	61, 287, 362, 468
BstNI	CCWGG	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	546
BstUI	CGCG	2 cut(s)	462, 673
BstV1I	GCAGC	5 cut(s)	209, 265, 365, 419, 466
BstX2I	RGATCY	1 cut(s)	265
BstXI	CCANNNNNNTGG	1 cut(s)	611
BstYI	RGATCY	1 cut(s)	265
BsuRI	GGCC	1 cut(s)	448
BtgI	CCRYGG	1 cut(s)	644
BtgZI	GCGATG	2 cut(s)	481, 486
BtsCI	GGATG	1 cut(s)	582
Cac8I	GCNNGC	2 cut(s)	469, 675
CseI	GACGC	1 cut(s)	679
Csp6I	GTAC	2 cut(s)	15, 517
CviAII	CATG	1 cut(s)	334
CviQI	GTAC	2 cut(s)	15, 517
DdeI	CTNAG	2 cut(s)	291, 594
DpnI	GATC	2 cut(s)	267, 382
DpnII	GATC	2 cut(s)	265, 380
EaeI	YGGCCR	1 cut(s)	446
Eco130I	CCWWGG	1 cut(s)	688
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	1 cut(s)	688
EcoT22I	ATGCAT	1 cut(s)	497
ErhI	CCWWGG	1 cut(s)	688
FaeI	CATG	1 cut(s)	337
FaiI	YATR	9 cut(s)	32, 162, 164, 188, 335, 419, 542, 544, 561
FatI	CATG	1 cut(s)	333
FauNDI	CATATG	1 cut(s)	162
Fnu4HI	GCNGC	5 cut(s)	198, 279, 354, 408, 480
FokI	GGATG	1 cut(s)	589
Fsp4HI	GCNGC	5 cut(s)	198, 279, 354, 408, 480
FspBI	CTAG	3 cut(s)	359, 581, 689
GluI	GCNGC	5 cut(s)	198, 279, 354, 408, 480
GsuI	CTGGAG	1 cut(s)	745
HaeIII	GGCC	1 cut(s)	448
HapII	CCGG	1 cut(s)	392
HgaI	GACGC	1 cut(s)	679
Hin1II	CATG	1 cut(s)	337
HinfI	GANTC	3 cut(s)	457, 720, 727
HpaII	CCGG	1 cut(s)	392
Hpy166II	GTNNAC	3 cut(s)	519, 695, 731
Hpy188I	TCNGA	6 cut(s)	94, 153, 251, 259, 595, 669
Hpy188III	TCNNGA	1 cut(s)	724
Hpy8I	GTNNAC	3 cut(s)	519, 695, 731
HpyAV	CCTTC	2 cut(s)	251, 307
HpyCH4III	ACNGT	1 cut(s)	557
HpyCH4IV	ACGT	1 cut(s)	609
HpyCH4V	TGCA	5 cut(s)	197, 281, 407, 436, 495
HpyF10VI	GCNNNNNNNGC	4 cut(s)	61, 287, 362, 468
HpyF3I	CTNAG	2 cut(s)	291, 594
HpySE526I	ACGT	1 cut(s)	609
Hsp92II	CATG	1 cut(s)	337
Kzo9I	GATC	2 cut(s)	265, 380
LmnI	GCTCC	2 cut(s)	98, 137
LpnPI	CCDG	7 cut(s)	332, 405, 533, 558, 560, 709, 747
Lsp1109I	GCAGC	5 cut(s)	209, 265, 365, 419, 466
LweI	GCATC	4 cut(s)	290, 504, 567, 637
MaeI	CTAG	3 cut(s)	359, 581, 689
MaeII	ACGT	1 cut(s)	609
MaeIII	GTNAC	1 cut(s)	682
MalI	GATC	2 cut(s)	267, 382
MbiI	CCGCTC	1 cut(s)	677
MboI	GATC	2 cut(s)	265, 380
MboII	GAAGA	2 cut(s)	276, 645
MflI	RGATCY	1 cut(s)	265
MlsI	TGGCCA	1 cut(s)	448
MluCI	AATT	5 cut(s)	205, 273, 327, 396, 757
MluNI	TGGCCA	1 cut(s)	448
MlyI	GAGTC	1 cut(s)	736
MmeI	TCCRAC	2 cut(s)	115, 274
MnlI	CCTC	4 cut(s)	69, 286, 438, 589
Mox20I	TGGCCA	1 cut(s)	448
Mph1103I	ATGCAT	1 cut(s)	497
MscI	TGGCCA	1 cut(s)	448
MseI	TTAA	3 cut(s)	27, 147, 272
MslI	CAYNNNNRTG	1 cut(s)	161
Msp20I	TGGCCA	1 cut(s)	448
MspA1I	CMGCKG	1 cut(s)	200
MspI	CCGG	1 cut(s)	392
MspR9I	CCNGG	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	548
MvnI	CGCG	2 cut(s)	462, 673
MwoI	GCNNNNNNNGC	4 cut(s)	61, 287, 362, 468
NdeI	CATATG	1 cut(s)	162
NdeII	GATC	2 cut(s)	265, 380
NlaIII	CATG	1 cut(s)	337
NlaIV	GGNNCC	1 cut(s)	377
NsiI	ATGCAT	1 cut(s)	497
PfeI	GAWTC	2 cut(s)	457, 720
PkrI	GCNGC	5 cut(s)	199, 280, 355, 409, 481
PleI	GAGTC	1 cut(s)	735
PpsI	GAGTC	1 cut(s)	735
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	377
PsuI	RGATCY	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	200
RsaI	GTAC	2 cut(s)	16, 518
RsaNI	GTAC	2 cut(s)	15, 517
RseI	CAYNNNNRTG	1 cut(s)	161
SaqAI	TTAA	3 cut(s)	27, 147, 272
SatI	GCNGC	5 cut(s)	198, 279, 354, 408, 480
Sau3AI	GATC	2 cut(s)	265, 380
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	1 cut(s)	548
SfaNI	GCATC	4 cut(s)	290, 504, 567, 637
SmiMI	CAYNNNNRTG	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	384
SmoI	CTYRAG	1 cut(s)	384
Sse9I	AATT	5 cut(s)	205, 273, 327, 396, 757
SsiI	CCGC	1 cut(s)	677
SspMI	CTAG	3 cut(s)	359, 581, 689
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	1 cut(s)	688
TaaI	ACNGT	1 cut(s)	557
TaiI	ACGT	1 cut(s)	612
TasI	AATT	5 cut(s)	205, 273, 327, 396, 757
TatI	WGTACW	1 cut(s)	516
TfiI	GAWTC	2 cut(s)	457, 720
Tru1I	TTAA	3 cut(s)	27, 147, 272
Tru9I	TTAA	3 cut(s)	27, 147, 272
TseI	GCWGC	5 cut(s)	197, 278, 353, 407, 479
TspDTI	ATGAA	3 cut(s)	233, 390, 503
XapI	RAATTY	1 cut(s)	205
XmaJI	CCTAGG	1 cut(s)	688
XspI	CTAG	3 cut(s)	359, 581, 689
Zsp2I	ATGCAT	1 cut(s)	497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.