Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0031275

Physical Location & Seq

Genomic Coordinates Forward (+)

12373128 .. 12373676

Gene Structure 549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG129100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGGTAAAGAACAGAAAACTGCTATGGATATTGCAGCTGAAAATTTCAACAGCCTTTCAAAGACTAATAACCTAATCCTTCATTTCCGACATTCTGACAGAGATCCCTTAATTGCTGCATCTTCGGTTGAGGAGTTGATAAAAGACAAGAAGGTAAAACTGATAATTGGCATGGAGACTTGGCAGGAAGCAGCTCTAGTAGCTGATGTGGGGAACCGATCTCAAGTTTCGGTAATTTCATTTGCAGCACCTACTATATCACCACCTCTAATGCAACACGAATGGCCATTTTTGATTCGCGTGGCAAGCGATGGTGCTGCTCAAATGAAATGCATCGCAGATATTGTTTCTTTGTACACTTGGAAAAGGGTTATTGTTATATACCAGGATAACGGTTATGGTGGTGATACTGGGATGCTAGCTGTTTTATCTGAGGCTCTCCAAGACGTTGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009719 GO:0009987 GO:0010033 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022838 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070588 GO:0070838 GO:0070887 GO:0071229 GO:0071230 GO:0071310 GO:0071417 GO:0071495 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

151

Amino Acids

16.58

Weight (kDa)

5.3

Isoelectric Point (pI)

19.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peripla_BP_6	PF13458	5 - 137	2e-06	Periplasmic binding protein
ANF_receptor	PF01094	6 - 136	5e-19	Receptor family ligand binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0031275)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003630.1_g000028
rosa_samantha	Rh5DG129100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	300
AclWI	GGATC	1 cut(s)	98
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	1 cut(s)	43
AfaI	GTAC	1 cut(s)	356
AgsI	TTSAA	2 cut(s)	49, 60
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	4 cut(s)	38, 194, 203, 422
AluI	AGCT	4 cut(s)	38, 194, 203, 422
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	98
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	5 cut(s)	35, 116, 191, 245, 317
ApoI	RAATTY	1 cut(s)	43
AsuHPI	GGTGA	2 cut(s)	252, 416
AsuNHI	GCTAGC	1 cut(s)	418
BalI	TGGCCA	1 cut(s)	286
BbvI	GCAGC	5 cut(s)	47, 103, 203, 257, 304
BccI	CCATC	1 cut(s)	305
BcgI	CGANNNNNNTGC	2 cut(s)	299, 333
BciT130I	CCWGG	1 cut(s)	386
BcoDI	GTCTC	1 cut(s)	170
BfaI	CTAG	2 cut(s)	197, 419
BisI	GCNGC	5 cut(s)	36, 117, 192, 246, 318
BlsI	GCNGC	5 cut(s)	37, 118, 193, 247, 319
Bme1390I	CCNGG	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	215
BmrFI	CCNGG	1 cut(s)	386
BmrI	ACTGGG	1 cut(s)	420
BmsI	GCATC	3 cut(s)	128, 342, 405
BmtI	GCTAGC	1 cut(s)	422
BmuI	ACTGGG	1 cut(s)	420
BpuEI	CTTGAG	1 cut(s)	207
Bse1I	ACTGG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	386
BseGI	GGATG	1 cut(s)	420
BseMII	CTCAG	1 cut(s)	423
BseNI	ACTGG	1 cut(s)	415
BseRI	GAGGAG	1 cut(s)	146
BseXI	GCAGC	5 cut(s)	47, 103, 203, 257, 304
Bsh1236I	CGCG	1 cut(s)	300
BshFI	GGCC	1 cut(s)	286
BsmAI	GTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	354
Bsp143I	GATC	2 cut(s)	103, 218
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	424
BspFNI	CGCG	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	215
BspOI	GCTAGC	1 cut(s)	422
BspPI	GGATC	1 cut(s)	98
BsrGI	TGTACA	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	415
BssMI	GATC	2 cut(s)	103, 218
Bst2UI	CCWGG	1 cut(s)	386
Bst4CI	ACNGT	1 cut(s)	395
BstAUI	TGTACA	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	307, 420
BstDEI	CTNAG	1 cut(s)	432
BstF5I	GGATG	1 cut(s)	420
BstFNI	CGCG	1 cut(s)	300
BstKTI	GATC	2 cut(s)	106, 221
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	2 cut(s)	103, 218
BstMWI	GCNNNNNNNGC	2 cut(s)	200, 306
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	384
BstUI	CGCG	1 cut(s)	300
BstV1I	GCAGC	5 cut(s)	47, 103, 203, 257, 304
BstX2I	RGATCY	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	449
BstYI	RGATCY	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	286
BtgZI	GCGATG	2 cut(s)	319, 324
BtsCI	GGATG	1 cut(s)	420
Cac8I	GCNNGC	2 cut(s)	307, 420
Csp6I	GTAC	1 cut(s)	355
CviAII	CATG	1 cut(s)	172
CviJI	RGCY	8 cut(s)	38, 54, 194, 203, 286, 422, 437, 453
CviKI_1	RGCY	8 cut(s)	38, 54, 194, 203, 286, 422, 437, 453
CviQI	GTAC	1 cut(s)	355
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	2 cut(s)	105, 220
DpnII	GATC	2 cut(s)	103, 218
EaeI	YGGCCR	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	384
EcoT22I	ATGCAT	1 cut(s)	335
FaeI	CATG	1 cut(s)	175
FaiI	YATR	6 cut(s)	26, 173, 257, 380, 382, 399
FatI	CATG	1 cut(s)	171
Fnu4HI	GCNGC	5 cut(s)	36, 117, 192, 246, 318
FokI	GGATG	1 cut(s)	427
Fsp4HI	GCNGC	5 cut(s)	36, 117, 192, 246, 318
FspBI	CTAG	2 cut(s)	197, 419
GluI	GCNGC	5 cut(s)	36, 117, 192, 246, 318
HaeIII	GGCC	1 cut(s)	286
Hin1II	CATG	1 cut(s)	175
HinfI	GANTC	1 cut(s)	295
HphI	GGTGA	2 cut(s)	252, 416
Hpy166II	GTNNAC	1 cut(s)	357
Hpy188I	TCNGA	3 cut(s)	89, 97, 433
Hpy8I	GTNNAC	1 cut(s)	357
HpyAV	CCTTC	2 cut(s)	89, 145
HpyCH4III	ACNGT	1 cut(s)	395
HpyCH4IV	ACGT	1 cut(s)	447
HpyCH4V	TGCA	5 cut(s)	35, 119, 245, 274, 333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	200, 306
HpyF3I	CTNAG	1 cut(s)	432
HpySE526I	ACGT	1 cut(s)	447
Hsp92II	CATG	1 cut(s)	175
Kzo9I	GATC	2 cut(s)	103, 218
LpnPI	CCDG	4 cut(s)	170, 371, 396, 398
Lsp1109I	GCAGC	5 cut(s)	47, 103, 203, 257, 304
LweI	GCATC	3 cut(s)	128, 342, 405
MaeI	CTAG	2 cut(s)	197, 419
MaeII	ACGT	1 cut(s)	447
MalI	GATC	2 cut(s)	105, 220
MboI	GATC	2 cut(s)	103, 218
MboII	GAAGA	1 cut(s)	114
MflI	RGATCY	1 cut(s)	103
MlsI	TGGCCA	1 cut(s)	286
MluCI	AATT	4 cut(s)	43, 111, 165, 234
MluNI	TGGCCA	1 cut(s)	286
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	3 cut(s)	124, 276, 427
Mox20I	TGGCCA	1 cut(s)	286
Mph1103I	ATGCAT	1 cut(s)	335
MscI	TGGCCA	1 cut(s)	286
MseI	TTAA	1 cut(s)	110
Msp20I	TGGCCA	1 cut(s)	286
MspA1I	CMGCKG	1 cut(s)	38
MspR9I	CCNGG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	200, 306
NdeII	GATC	2 cut(s)	103, 218
NheI	GCTAGC	1 cut(s)	418
NlaIII	CATG	1 cut(s)	175
NlaIV	GGNNCC	1 cut(s)	215
NsiI	ATGCAT	1 cut(s)	335
PfeI	GAWTC	1 cut(s)	295
PkrI	GCNGC	5 cut(s)	37, 118, 193, 247, 319
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	1 cut(s)	215
PsuI	RGATCY	1 cut(s)	103
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	1 cut(s)	356
RsaNI	GTAC	1 cut(s)	355
SaqAI	TTAA	1 cut(s)	110
SatI	GCNGC	5 cut(s)	36, 117, 192, 246, 318
Sau3AI	GATC	2 cut(s)	103, 218
ScrFI	CCNGG	1 cut(s)	386
SetI	ASST	9 cut(s)	40, 75, 156, 196, 205, 253, 268, 424, 450
SfaNI	GCATC	3 cut(s)	128, 342, 405
SmlI	CTYRAG	1 cut(s)	222
SmoI	CTYRAG	1 cut(s)	222
Sse9I	AATT	4 cut(s)	43, 111, 165, 234
SspMI	CTAG	2 cut(s)	197, 419
StyD4I	CCNGG	1 cut(s)	384
TaaI	ACNGT	1 cut(s)	395
TaiI	ACGT	1 cut(s)	450
TasI	AATT	4 cut(s)	43, 111, 165, 234
TatI	WGTACW	1 cut(s)	354
TfiI	GAWTC	1 cut(s)	295
Tru1I	TTAA	1 cut(s)	110
Tru9I	TTAA	1 cut(s)	110
TseI	GCWGC	5 cut(s)	35, 116, 191, 245, 317
TspDTI	ATGAA	3 cut(s)	71, 228, 341
XapI	RAATTY	1 cut(s)	43
XspI	CTAG	2 cut(s)	197, 419
Zsp2I	ATGCAT	1 cut(s)	335

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.