Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003673.1

Orthogroup ID

OG0029053

Physical Location & Seq

Genomic Coordinates Forward (+)

914 .. 2826

Gene Structure 1913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atggcttcctttgtgtcagcttttcttatgcagtttatcattgctgcaaatcttcttggacttccagccatttctgtacctgttggctatgataaacaaggacttccaataggtctgcaactaattggccgtccctggggggaagcttcaattctgcgtttggcttctgcaatagaggaactctgcgtgaagtccaagaagaggcctgcgtcatattttgatgttctaaaatccaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005794 GO:0005886 GO:0006066 GO:0006576 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009308 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0012505 GO:0016020 GO:0016787 GO:0016810 GO:0016811 GO:0031090 GO:0034308 GO:0034641 GO:0042439 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044106 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0047412 GO:0050896 GO:0051704 GO:0051707 GO:0070291 GO:0071704 GO:0071944 GO:0098542 GO:0098588 GO:0098805 GO:1901564 GO:1901615

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Amidase

Protein Analysis

79

Amino Acids

8.52

Weight (kDa)

9.36

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Amidase	PF01425	9 - 52	1.1e-10	Amidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0029053)

Species	Orthologous Gene IDs
prunus_persica	Prupe.4G282100_v2.0.a1
rosa_multiflora	Rmu_sc0003673.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	127
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	136, 201
AgsI	TTSAA	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	134
AluBI	AGCT	2 cut(s)	20, 146
AluI	AGCT	2 cut(s)	20, 146
AoxI	GGCC	2 cut(s)	127, 203
ApeKI	GCWGC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	31
BceAI	ACGGC	1 cut(s)	114
BciT130I	CCWGG	1 cut(s)	136
BisI	GCNGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	136
BmrFI	CCNGG	1 cut(s)	136
BsaJI	CCNNGG	2 cut(s)	134, 135
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 201
Bse3DI	GCAATG	1 cut(s)	39
BseBI	CCWGG	1 cut(s)	136
BseDI	CCNNGG	2 cut(s)	134, 135
BseLI	CCNNNNNNNGG	2 cut(s)	136, 201
BseMI	GCAATG	1 cut(s)	39
BseXI	GCAGC	1 cut(s)	31
BshFI	GGCC	2 cut(s)	129, 205
BslFI	GGGAC	1 cut(s)	117
BslI	CCNNNNNNNGG	2 cut(s)	136, 201
BsmFI	GGGAC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	129, 205
BspANI	GGCC	2 cut(s)	129, 205
BsrDI	GCAATG	1 cut(s)	39
BssECI	CCNNGG	2 cut(s)	134, 135
Bst2UI	CCWGG	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	207
BstNI	CCWGG	1 cut(s)	136
BstSCI	CCNGG	1 cut(s)	134
BstV1I	GCAGC	1 cut(s)	31
BsuRI	GGCC	2 cut(s)	129, 205
Cac8I	GCNNGC	1 cut(s)	207
CseI	GACGC	1 cut(s)	198
Csp6I	GTAC	1 cut(s)	77
CviJI	RGCY	8 cut(s)	5, 20, 68, 87, 129, 146, 164, 205
CviKI_1	RGCY	8 cut(s)	5, 20, 68, 87, 129, 146, 164, 205
CviQI	GTAC	1 cut(s)	77
EaeI	YGGCCR	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
Eco147I	AGGCCT	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	134
FaiI	YATR	3 cut(s)	29, 90, 214
FaqI	GGGAC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	45
Fsp4HI	GCNGC	1 cut(s)	45
GluI	GCNGC	1 cut(s)	45
HaeIII	GGCC	2 cut(s)	129, 205
HgaI	GACGC	1 cut(s)	198
HindIII	AAGCTT	1 cut(s)	144
HpyCH4V	TGCA	4 cut(s)	31, 47, 118, 170
LpnPI	CCDG	5 cut(s)	78, 93, 121, 148, 219
Lsp1109I	GCAGC	1 cut(s)	31
MboII	GAAGA	2 cut(s)	44, 211
MluCI	AATT	2 cut(s)	123, 150
MnlI	CCTC	2 cut(s)	169, 195
MspR9I	CCNGG	1 cut(s)	136
MvaI	CCWGG	1 cut(s)	136
PasI	CCCWGGG	1 cut(s)	135
PceI	AGGCCT	1 cut(s)	205
PkrI	GCNGC	1 cut(s)	46
Psp6I	CCWGG	1 cut(s)	134
PspGI	CCWGG	1 cut(s)	134
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SatI	GCNGC	1 cut(s)	45
ScrFI	CCNGG	1 cut(s)	136
SetI	ASST	4 cut(s)	22, 82, 115, 148
SgeI	CNNG	9 cut(s)	68, 77, 92, 110, 147, 148, 199, 208, 218
Sse9I	AATT	2 cut(s)	123, 150
SseBI	AGGCCT	1 cut(s)	205
StuI	AGGCCT	1 cut(s)	205
StyD4I	CCNGG	1 cut(s)	134
TasI	AATT	2 cut(s)	123, 150
TseI	GCWGC	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.