Rmu_sc0003863.1_g000008

VQ motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003863.1
OG0031285
Physical Location & Seq
Forward (+)
59093 .. 59422
330 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 330 bp
atgaccagatccgactccgctaacccttactcgaccaccttggtccaggccgacacctcatctttcaaacaagtctttcaaatgctaaccggatcctcggaaacaactaataagctggtgttttcgaaacacaatgtcagacgcaacatcccgccgatcaagtcaaccctgaagaagcagcaacaacaacagaactccagtttcaagctatacgagcaccgcaacaacgccctgaagaatctcagactaaaccctctaatcccaatcccggtgttcaattccaacaacaacaacaacaacaacaagaccaactccgggttctcgcagtga

Protein Analysis

109

Amino Acids

12.4

Weight (kDa)

10.6

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VQ PF05678 9 - 35 5.7e-07 VQ motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0031285)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8258207.1_g000001 Rmu_sc0003863.1_g000008

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 18, 152, 220
AclWI GGATC 3 cut(s) 3, 87, 100
AcuI CTGAAG 2 cut(s) 191, 254
AfiI CCNNNNNNNGG 2 cut(s) 268, 315
AgsI TTSAA 4 cut(s) 67, 80, 205, 277
AjnI CCWGG 1 cut(s) 45
AjuI GAANNNNNNNTTGG 1 cut(s) 302
AluBI AGCT 2 cut(s) 115, 208
AluI AGCT 2 cut(s) 115, 208
Alw21I GWGCWC 1 cut(s) 219
AlwI GGATC 3 cut(s) 3, 87, 100
AoxI GGCC 1 cut(s) 48
ApeKI GCWGC 1 cut(s) 178
AspS9I GGNCC 1 cut(s) 43
AsuC2I CCSGG 2 cut(s) 269, 316
AsuII TTCGAA 1 cut(s) 125
AvaII GGWCC 1 cut(s) 43
BamHI GGATCC 1 cut(s) 92
Bbv12I GWGCWC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 190
BciT130I CCWGG 1 cut(s) 47
BcnI CCSGG 2 cut(s) 269, 316
BisI GCNGC 1 cut(s) 179
BlsI GCNGC 1 cut(s) 180
Bme1390I CCNGG 3 cut(s) 47, 269, 316
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 3 cut(s) 47, 269, 316
BpmI CTGGAG 1 cut(s) 181
Bpu14I TTCGAA 1 cut(s) 125
BpuMI CCSGG 2 cut(s) 269, 316
BsaJI CCNNGG 2 cut(s) 39, 96
BsaWI WCCGGW 1 cut(s) 89
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 315
Bse1I ACTGG 1 cut(s) 198
BseBI CCWGG 1 cut(s) 47
BseDI CCNNGG 2 cut(s) 39, 96
BseGI GGATG 1 cut(s) 147
BseLI CCNNNNNNNGG 2 cut(s) 268, 315
BseMII CTCAG 1 cut(s) 256
BseNI ACTGG 1 cut(s) 198
BseXI GCAGC 1 cut(s) 190
BshFI GGCC 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 219
BsiSI CCGG 3 cut(s) 90, 269, 315
BslI CCNNNNNNNGG 2 cut(s) 268, 315
BsnI GGCC 1 cut(s) 50
Bsp119I TTCGAA 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 219
Bsp143I GATC 3 cut(s) 8, 92, 156
BspACI CCGC 3 cut(s) 18, 152, 220
BspANI GGCC 1 cut(s) 50
BspCNI CTCAG 1 cut(s) 255
BspLI GGNNCC 1 cut(s) 94
BspPI GGATC 3 cut(s) 3, 87, 100
BspT104I TTCGAA 1 cut(s) 125
BsrI ACTGG 1 cut(s) 198
BssECI CCNNGG 2 cut(s) 39, 96
BssMI GATC 3 cut(s) 8, 92, 156
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 47
BstBI TTCGAA 1 cut(s) 125
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 147
BstKTI GATC 3 cut(s) 11, 95, 159
BstMBI GATC 3 cut(s) 8, 92, 156
BstMWI GCNNNNNNNGC 1 cut(s) 214
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 3 cut(s) 45, 267, 314
BstV1I GCAGC 1 cut(s) 190
BstX2I RGATCY 2 cut(s) 8, 92
BstYI RGATCY 2 cut(s) 8, 92
BsuRI GGCC 1 cut(s) 50
BtsCI GGATG 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 43
CseI GACGC 1 cut(s) 150
CviJI RGCY 3 cut(s) 50, 115, 208
CviKI_1 RGCY 3 cut(s) 50, 115, 208
DdeI CTNAG 1 cut(s) 242
DpnI GATC 3 cut(s) 10, 94, 158
DpnII GATC 3 cut(s) 8, 92, 156
Eco130I CCWWGG 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 2 cut(s) 191, 254
EcoRII CCWGG 1 cut(s) 45
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaiI YATR 1 cut(s) 211
FauI CCCGC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 179
FokI GGATG 1 cut(s) 134
Fsp4HI GCNGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 179
GsuI CTGGAG 1 cut(s) 181
HaeIII GGCC 1 cut(s) 50
HapII CCGG 3 cut(s) 90, 269, 315
HgaI GACGC 1 cut(s) 150
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HinfI GANTC 2 cut(s) 14, 238
HpaII CCGG 3 cut(s) 90, 269, 315
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 4 cut(s) 13, 100, 140, 245
Hpy8I GTNNAC 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 214
HpyF3I CTNAG 1 cut(s) 242
Kzo9I GATC 3 cut(s) 8, 92, 156
LpnPI CCDG 9 cut(s) 19, 32, 59, 101, 103, 182, 211, 245, 282
Lsp1109I GCAGC 1 cut(s) 190
MalI GATC 3 cut(s) 10, 94, 158
MboI GATC 3 cut(s) 8, 92, 156
MboII GAAGA 2 cut(s) 184, 247
MflI RGATCY 2 cut(s) 8, 92
MhlI GDGCHC 1 cut(s) 219
MluCI AATT 1 cut(s) 277
MlyI GAGTC 1 cut(s) 8
MmeI TCCRAC 2 cut(s) 36, 306
MnlI CCTC 3 cut(s) 67, 106, 264
MspI CCGG 3 cut(s) 90, 269, 315
MspR9I CCNGG 3 cut(s) 47, 269, 316
MvaI CCWGG 1 cut(s) 47
MwoI GCNNNNNNNGC 1 cut(s) 214
NciI CCSGG 2 cut(s) 269, 316
NdeII GATC 3 cut(s) 8, 92, 156
NlaIV GGNNCC 1 cut(s) 94
NspV TTCGAA 1 cut(s) 125
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 1 cut(s) 180
PleI GAGTC 1 cut(s) 8
PpsI GAGTC 1 cut(s) 8
Psp6I CCWGG 1 cut(s) 45
PspGI CCWGG 1 cut(s) 45
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 1 cut(s) 43
PsuI RGATCY 2 cut(s) 8, 92
SatI GCNGC 1 cut(s) 179
Sau3AI GATC 3 cut(s) 8, 92, 156
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 8
ScrFI CCNGG 3 cut(s) 47, 269, 316
SduI GDGCHC 1 cut(s) 219
SetI ASST 4 cut(s) 41, 59, 117, 210
SfuI TTCGAA 1 cut(s) 125
SinI GGWCC 1 cut(s) 43
Sse9I AATT 1 cut(s) 277
SsiI CCGC 3 cut(s) 18, 152, 220
StyD4I CCNGG 3 cut(s) 45, 267, 314
StyI CCWWGG 1 cut(s) 39
TaqI TCGA 2 cut(s) 32, 125
TasI AATT 1 cut(s) 277
TfiI GAWTC 1 cut(s) 238
TseI GCWGC 1 cut(s) 178
VpaK11BI GGWCC 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.