Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003877.1

Orthogroup ID

OG0031286

Physical Location & Seq

Genomic Coordinates Reverse (-)

88930 .. 90314

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003877.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgaaggatctcttcattctgaatgatgagggagacagtggggctactgaaacagctaatatatttgggcagttatctgaagatgccaatgttgtttgtgctcagaaagatgaccgcagtacgcgagagtctaagaaagttactgtaccatataccaatgcttctgctggcaaaagaaggaactctgagattgaatcatcaaggagaaatggaaaagaaaaagctgatcacagtgagggcgatgtggacgaagaaacaaatattctgaagtgtctttttgacacgcaagggatccatagtgctatgaaccatgatgtgatcatgaatgcccatgatgaagagaaggtgaggcttgaggagcaagcttcccaagttgcacaaagagcagcagaagcattgcgccagtcacgaatgcttcggagccgtgacagtgtatctgttcccacatggactgggaaatcaggaatggcaggtgcaccatcagctgtccgtgggaaatttggttctactgtgaattcccgattgataagtaataccaaaccctccgctgaagtttccaacagtagaacaaatgggttcgtggctggggcatctgccgggaaggcattatcttctgctgaattactagcaagaattcgaggaaaccaggaaaaagctgttgaagctggaattgagcaacagtttgggatggcttctagttcttctagcagaggaaaagccgtggatgctgggccttctaggccgtcgcagaacttgggtggagtgccacctgaagtactgattcgtaagatctgtacattcctccaagaaagaggtggaagtacgaattctgccacaatagtgcagcattttaaggatagaataccctcaaaagatcttcccttgtttaagaatcttttgaaggaaatagcaaagctagagaaaaccccgagcggatcagtttgggttctaaagccagagtttcatcaacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001207 GO:0001208 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006325 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010767 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034644 GO:0034728 GO:0042623 GO:0043170 GO:0043618 GO:0043620 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0104004 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

324

Amino Acids

35.02

Weight (kDa)

8.88

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031286)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003877.1_g000016 Rmu_sc0003877.1_g000017

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	461
AccBSI	CCGCTC	1 cut(s)	933
AccII	CGCG	1 cut(s)	124
AciI	CCGC	3 cut(s)	115, 546, 933
AclWI	GGATC	4 cut(s)	15, 286, 299, 943
AcsI	RAATTY	4 cut(s)	497, 514, 633, 826
AcuI	CTGAAG	4 cut(s)	99, 287, 570, 792
AfaI	GTAC	5 cut(s)	121, 147, 777, 796, 823
AgsI	TTSAA	3 cut(s)	194, 662, 901
AjnI	CCWGG	1 cut(s)	645
AleI	CACNNNNGTG	1 cut(s)	839
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	7 cut(s)	56, 224, 365, 485, 656, 665, 916
AluI	AGCT	7 cut(s)	56, 224, 365, 485, 656, 665, 916
Alw21I	GWGCWC	2 cut(s)	103, 478
Alw26I	GTCTC	1 cut(s)	27
Alw44I	GTGCAC	1 cut(s)	474
AlwI	GGATC	4 cut(s)	15, 286, 299, 943
Ama87I	CYCGRG	1 cut(s)	928
AoxI	GGCC	2 cut(s)	731, 740
ApaLI	GTGCAC	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	386, 844
ApoI	RAATTY	4 cut(s)	497, 514, 633, 826
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	731
AsuC2I	CCSGG	1 cut(s)	598
AsuHPI	GGTGA	1 cut(s)	358
AvaI	CYCGRG	1 cut(s)	928
BaeGI	GKGCMC	1 cut(s)	478
BamHI	GGATCC	1 cut(s)	291
Bbv12I	GWGCWC	2 cut(s)	103, 478
BbvI	GCAGC	2 cut(s)	398, 856
BccI	CCATC	2 cut(s)	487, 682
BceAI	ACGGC	3 cut(s)	408, 704, 727
BciT130I	CCWGG	1 cut(s)	647
BclI	TGATCA	2 cut(s)	226, 318
BcnI	CCSGG	1 cut(s)	598
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	5 cut(s)	626, 696, 705, 738, 917
BfuAI	ACCTGC	1 cut(s)	461
BglI	GCCNNNNNGGC	2 cut(s)	602, 739
BglII	AGATCT	2 cut(s)	789, 874
BisI	GCNGC	2 cut(s)	387, 845
BlsI	GCNGC	2 cut(s)	388, 846
BmcAI	AGTACT	1 cut(s)	777
Bme1390I	CCNGG	2 cut(s)	598, 647
BmeT110I	CYCGRG	1 cut(s)	928
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	2 cut(s)	293, 422
BmrFI	CCNGG	2 cut(s)	598, 647
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	3 cut(s)	73, 599, 715
BmuI	ACTGGG	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	598
BsaJI	CCNNGG	2 cut(s)	490, 720
Bse1I	ACTGG	2 cut(s)	403, 457
Bse3DI	GCAATG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	2 cut(s)	490, 720
BseGI	GGATG	2 cut(s)	693, 730
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	116, 177
BseNI	ACTGG	2 cut(s)	403, 457
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	2 cut(s)	398, 856
BseYI	CCCAGC	2 cut(s)	584, 728
BsgI	GTGCAG	1 cut(s)	863
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	733, 742
BsiHKAI	GWGCWC	2 cut(s)	103, 478
BsiHKCI	CYCGRG	1 cut(s)	928
BsiSI	CCGG	1 cut(s)	597
BsmAI	GTCTC	1 cut(s)	27
BsmI	GAATGC	2 cut(s)	331, 417
BsnI	GGCC	2 cut(s)	733, 742
BsoBI	CYCGRG	1 cut(s)	928
Bsp1286I	GDGCHC	2 cut(s)	103, 478
Bsp1407I	TGTACA	1 cut(s)	794
Bsp143I	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
BspACI	CCGC	3 cut(s)	115, 546, 933
BspANI	GGCC	2 cut(s)	733, 742
BspCNI	CTCAG	2 cut(s)	115, 178
BspFNI	CGCG	1 cut(s)	124
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	293, 422
BspMI	ACCTGC	1 cut(s)	461
BspPI	GGATC	4 cut(s)	15, 286, 299, 943
BsrBI	CCGCTC	1 cut(s)	933
BsrDI	GCAATG	1 cut(s)	395
BsrGI	TGTACA	1 cut(s)	794
BsrI	ACTGG	2 cut(s)	403, 457
BssECI	CCNNGG	2 cut(s)	490, 720
BssMI	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	8 cut(s)	38, 145, 233, 431, 511, 563, 681, 972
Bst6I	CTCTTC	2 cut(s)	17, 333
BstAUI	TGTACA	1 cut(s)	794
BstC8I	GCNNGC	2 cut(s)	169, 363
BstDEI	CTNAG	3 cut(s)	102, 132, 186
BstDSI	CCRYGG	2 cut(s)	490, 720
BstF5I	GGATG	2 cut(s)	693, 730
BstFNI	CGCG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	7 cut(s)	10, 229, 294, 321, 792, 877, 938
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
BstMWI	GCNNNNNNNGC	8 cut(s)	358, 383, 392, 482, 602, 662, 725, 739
BstNI	CCWGG	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	596, 645
BstSLI	GKGCMC	1 cut(s)	478
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	398, 856
BstX2I	RGATCY	4 cut(s)	7, 291, 789, 874
BstYI	RGATCY	4 cut(s)	7, 291, 789, 874
BsuRI	GGCC	2 cut(s)	733, 742
BtgI	CCRYGG	2 cut(s)	490, 720
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	693, 730
BtsIMutI	CAGTG	3 cut(s)	43, 238, 436
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	2 cut(s)	169, 363
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	731
Csp6I	GTAC	5 cut(s)	120, 146, 776, 795, 822
CviAII	CATG	4 cut(s)	311, 322, 332, 447
CviQI	GTAC	5 cut(s)	120, 146, 776, 795, 822
DdeI	CTNAG	3 cut(s)	102, 132, 186
DpnI	GATC	7 cut(s)	9, 228, 293, 320, 791, 876, 937
DpnII	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
Eam1104I	CTCTTC	2 cut(s)	17, 333
EarI	CTCTTC	2 cut(s)	17, 333
Eco57I	CTGAAG	4 cut(s)	99, 287, 570, 792
Eco88I	CYCGRG	1 cut(s)	928
EcoRI	GAATTC	3 cut(s)	514, 633, 826
EcoRII	CCWGG	1 cut(s)	645
FaeI	CATG	4 cut(s)	314, 325, 335, 450
FaiI	YATR	9 cut(s)	62, 151, 153, 297, 305, 312, 323, 333, 448
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	4 cut(s)	310, 321, 331, 446
FbaI	TGATCA	2 cut(s)	226, 318
Fnu4HI	GCNGC	2 cut(s)	387, 845
FokI	GGATG	2 cut(s)	700, 737
Fsp4HI	GCNGC	2 cut(s)	387, 845
FspBI	CTAG	5 cut(s)	626, 696, 705, 738, 917
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	2 cut(s)	387, 845
GsaI	CCCAGC	2 cut(s)	588, 732
HaeIII	GGCC	2 cut(s)	733, 742
HapII	CCGG	1 cut(s)	597
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	4 cut(s)	314, 325, 335, 450
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	4 cut(s)	128, 194, 781, 892
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	2 cut(s)	247, 476
Hpy188I	TCNGA	6 cut(s)	21, 79, 105, 187, 267, 420
Hpy188III	TCNNGA	4 cut(s)	322, 408, 462, 519
Hpy8I	GTNNAC	2 cut(s)	247, 476
Hpy99I	CGWCG	1 cut(s)	748
HpyAV	CCTTC	5 cut(s)	171, 337, 595, 744, 895
HpyCH4III	ACNGT	8 cut(s)	38, 145, 233, 431, 511, 563, 681, 972
HpyCH4V	TGCA	3 cut(s)	377, 476, 844
HpyF10VI	GCNNNNNNNGC	8 cut(s)	358, 383, 392, 482, 602, 662, 725, 739
HpyF3I	CTNAG	3 cut(s)	102, 132, 186
Hsp92II	CATG	4 cut(s)	314, 325, 335, 450
HspAI	GCGC	1 cut(s)	400
Ksp22I	TGATCA	2 cut(s)	226, 318
Kzo9I	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
LmnI	GCTCC	2 cut(s)	358, 420
Lsp1109I	GCAGC	2 cut(s)	398, 856
LweI	GCATC	3 cut(s)	73, 599, 715
MaeI	CTAG	5 cut(s)	626, 696, 705, 738, 917
MaeIII	GTNAC	3 cut(s)	139, 405, 425
MalI	GATC	7 cut(s)	9, 228, 293, 320, 791, 876, 937
MbiI	CCGCTC	1 cut(s)	933
MboI	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
MboII	GAAGA	7 cut(s)	4, 92, 263, 350, 603, 693, 869
MflI	RGATCY	4 cut(s)	7, 291, 789, 874
MhlI	GDGCHC	2 cut(s)	103, 478
MluCI	AATT	6 cut(s)	497, 514, 620, 633, 669, 826
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	582
MseI	TTAA	2 cut(s)	852, 888
MslI	CAYNNNNRTG	1 cut(s)	839
MspA1I	CMGCKG	2 cut(s)	485, 548
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	2 cut(s)	598, 647
Mva1269I	GAATGC	2 cut(s)	331, 417
MvaI	CCWGG	1 cut(s)	647
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	8 cut(s)	358, 383, 392, 482, 602, 662, 725, 739
NciI	CCSGG	1 cut(s)	598
NdeII	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
NlaIII	CATG	4 cut(s)	314, 325, 335, 450
NlaIV	GGNNCC	2 cut(s)	293, 422
NmuCI	GTSAC	2 cut(s)	405, 425
OliI	CACNNNNGTG	1 cut(s)	839
PagI	TCATGA	1 cut(s)	321
PaqCI	CACCTGC	1 cut(s)	461
PctI	GAATGC	2 cut(s)	331, 417
PfeI	GAWTC	3 cut(s)	194, 781, 892
PkrI	GCNGC	2 cut(s)	388, 846
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	645
PspFI	CCCAGC	2 cut(s)	584, 728
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	2 cut(s)	293, 422
PspPI	GGNCC	1 cut(s)	731
PsuI	RGATCY	4 cut(s)	7, 291, 789, 874
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	5 cut(s)	121, 147, 777, 796, 823
RsaNI	GTAC	5 cut(s)	120, 146, 776, 795, 822
RseI	CAYNNNNRTG	1 cut(s)	839
SaqAI	TTAA	2 cut(s)	852, 888
SatI	GCNGC	2 cut(s)	387, 845
Sau3AI	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
Sau96I	GGNCC	1 cut(s)	731
ScaI	AGTACT	1 cut(s)	777
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	598, 647
SduI	GDGCHC	2 cut(s)	103, 478
SfaNI	GCATC	3 cut(s)	73, 599, 715
SfiI	GGCCNNNNNGGCC	1 cut(s)	739
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	6 cut(s)	497, 514, 620, 633, 669, 826
SsiI	CCGC	3 cut(s)	115, 546, 933
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	5 cut(s)	626, 696, 705, 738, 917
StyD4I	CCNGG	2 cut(s)	596, 645
TaaI	ACNGT	8 cut(s)	38, 145, 233, 431, 511, 563, 681, 972
TaqI	TCGA	1 cut(s)	637
TasI	AATT	6 cut(s)	497, 514, 620, 633, 669, 826
TatI	WGTACW	2 cut(s)	775, 794
TfiI	GAWTC	3 cut(s)	194, 781, 892
Tru1I	TTAA	2 cut(s)	852, 888
Tru9I	TTAA	2 cut(s)	852, 888
TscAI	CASTG	3 cut(s)	43, 238, 436
TseFI	GTSAC	2 cut(s)	405, 425
TseI	GCWGC	2 cut(s)	386, 844
Tsp45I	GTSAC	2 cut(s)	405, 425
TspDTI	ATGAA	6 cut(s)	4, 17, 320, 338, 351, 953
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	3 cut(s)	43, 238, 436
VneI	GTGCAC	1 cut(s)	474
XapI	RAATTY	4 cut(s)	497, 514, 633, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	812
XspI	CTAG	5 cut(s)	626, 696, 705, 738, 917
ZrmI	AGTACT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.