Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003877.1

Orthogroup ID

OG0031286

Physical Location & Seq

Genomic Coordinates Reverse (-)

88930 .. 90314

Gene Structure 1385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

atgaaggatctcttcattctgaatgatgagggagacagtggggctactgaaacagctaatatatttgggcagttatctgaagatgccaatgttgtttgtgctcagaaagatgaccgcagtacgcgagagtctaagaaagttactgtaccatataccaatgcttctgctggcaaaagaaggaactctgagattgaatcatcaaggagaaatggaaaagaaaaagctgatcacagtgagggcgatgtggacgaagaaacaaatattctgaagtgtctttttgacacgcaagggatccatagtgctatgaaccatgatgtgatcatgaatgcccatgatgaagagaaggtgaggcttgaggagcaagcttcccaagttgcacaaagagcagcagaagcattgcgccagtcacgaatgcttcggagccgtgacagtgtatctgttcccacatggactgggaaatcaggaatggcaggtgcaccatcagctgtccgtgggaaatttggttctactgtgaattcccgattgataagtaataccaaaccctccgctgaagtttccaacagtagaacaaatgggttcgtggctggggcatctgccgggaaggcattatcttctgctgaattactagcaagaattcgaggaaaccaggaaaaagctgttgaagctggaattgagcaacagtttgggatggcttctagttcttctagcagaggaaaagccgtggatgctgggccttctaggccgtcgcagaacttgggtggagtgccacctgaagtactgattcgtaagatctgtacattcctccaagaaagaggtggaagtacgaattctgccacaatagtgcagcattttaaggatagaataccctcaaaagatcttcccttgtttaagaatcttttgaaggaaatagcaaagctagagaaaaccccgagcggatcagtttgggttctaaagccagagtttcatcaacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001207 GO:0001208 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006325 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010767 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034644 GO:0034728 GO:0042623 GO:0043170 GO:0043618 GO:0043620 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0104004 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

324

Amino Acids

35.02

Weight (kDa)

8.88

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_Rad26_CSB	PF25875	259 - 322	2.7e-15	Rad26/CSB winged helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031286)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003877.1_g000016 Rmu_sc0003877.1_g000017

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	461
Acc36I	ACCTGC	1 cut(s)	461
AccBSI	CCGCTC	1 cut(s)	933
AccII	CGCG	1 cut(s)	124
AciI	CCGC	3 cut(s)	115, 546, 933
AclWI	GGATC	4 cut(s)	15, 286, 299, 943
AcsI	RAATTY	4 cut(s)	497, 514, 633, 826
AcuI	CTGAAG	4 cut(s)	99, 287, 570, 792
AfaI	GTAC	5 cut(s)	121, 147, 777, 796, 823
AgsI	TTSAA	3 cut(s)	194, 662, 901
AjnI	CCWGG	1 cut(s)	645
AleI	CACNNNNGTG	1 cut(s)	839
AloI	GAACNNNNNNTCC	2 cut(s)	487, 519
AluBI	AGCT	7 cut(s)	56, 224, 365, 485, 656, 665, 916
AluI	AGCT	7 cut(s)	56, 224, 365, 485, 656, 665, 916
Alw21I	GWGCWC	2 cut(s)	103, 478
Alw26I	GTCTC	1 cut(s)	27
Alw44I	GTGCAC	1 cut(s)	474
AlwI	GGATC	4 cut(s)	15, 286, 299, 943
Ama87I	CYCGRG	1 cut(s)	928
AoxI	GGCC	2 cut(s)	731, 740
ApaLI	GTGCAC	1 cut(s)	474
ApeKI	GCWGC	2 cut(s)	386, 844
ApoI	RAATTY	4 cut(s)	497, 514, 633, 826
AspLEI	GCGC	1 cut(s)	402
AspS9I	GGNCC	1 cut(s)	731
AsuC2I	CCSGG	1 cut(s)	598
AsuHPI	GGTGA	1 cut(s)	358
AvaI	CYCGRG	1 cut(s)	928
BaeGI	GKGCMC	1 cut(s)	478
BamHI	GGATCC	1 cut(s)	291
Bbv12I	GWGCWC	2 cut(s)	103, 478
BbvI	GCAGC	2 cut(s)	398, 856
BccI	CCATC	2 cut(s)	487, 682
BceAI	ACGGC	3 cut(s)	408, 704, 727
BciT130I	CCWGG	1 cut(s)	647
BclI	TGATCA	2 cut(s)	226, 318
BcnI	CCSGG	1 cut(s)	598
BcoDI	GTCTC	1 cut(s)	27
BfaI	CTAG	5 cut(s)	626, 696, 705, 738, 917
BfuAI	ACCTGC	1 cut(s)	461
BglI	GCCNNNNNGGC	2 cut(s)	602, 739
BglII	AGATCT	2 cut(s)	789, 874
BisI	GCNGC	2 cut(s)	387, 845
BlsI	GCNGC	2 cut(s)	388, 846
BmcAI	AGTACT	1 cut(s)	777
Bme1390I	CCNGG	2 cut(s)	598, 647
BmeT110I	CYCGRG	1 cut(s)	928
BmgT120I	GGNCC	1 cut(s)	731
BmiI	GGNNCC	2 cut(s)	293, 422
BmrFI	CCNGG	2 cut(s)	598, 647
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	3 cut(s)	73, 599, 715
BmuI	ACTGGG	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	374
BpuMI	CCSGG	1 cut(s)	598
BsaJI	CCNNGG	2 cut(s)	490, 720
Bse1I	ACTGG	2 cut(s)	403, 457
Bse3DI	GCAATG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	2 cut(s)	490, 720
BseGI	GGATG	2 cut(s)	693, 730
BseMI	GCAATG	1 cut(s)	395
BseMII	CTCAG	2 cut(s)	116, 177
BseNI	ACTGG	2 cut(s)	403, 457
BseRI	GAGGAG	1 cut(s)	371
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	2 cut(s)	398, 856
BseYI	CCCAGC	2 cut(s)	584, 728
BsgI	GTGCAG	1 cut(s)	863
Bsh1236I	CGCG	1 cut(s)	124
BshFI	GGCC	2 cut(s)	733, 742
BsiHKAI	GWGCWC	2 cut(s)	103, 478
BsiHKCI	CYCGRG	1 cut(s)	928
BsiSI	CCGG	1 cut(s)	597
BsmAI	GTCTC	1 cut(s)	27
BsmI	GAATGC	2 cut(s)	331, 417
BsnI	GGCC	2 cut(s)	733, 742
BsoBI	CYCGRG	1 cut(s)	928
Bsp1286I	GDGCHC	2 cut(s)	103, 478
Bsp1407I	TGTACA	1 cut(s)	794
Bsp143I	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
BspACI	CCGC	3 cut(s)	115, 546, 933
BspANI	GGCC	2 cut(s)	733, 742
BspCNI	CTCAG	2 cut(s)	115, 178
BspFNI	CGCG	1 cut(s)	124
BspHI	TCATGA	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	293, 422
BspMI	ACCTGC	1 cut(s)	461
BspPI	GGATC	4 cut(s)	15, 286, 299, 943
BsrBI	CCGCTC	1 cut(s)	933
BsrDI	GCAATG	1 cut(s)	395
BsrGI	TGTACA	1 cut(s)	794
BsrI	ACTGG	2 cut(s)	403, 457
BssECI	CCNNGG	2 cut(s)	490, 720
BssMI	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	8 cut(s)	38, 145, 233, 431, 511, 563, 681, 972
Bst6I	CTCTTC	2 cut(s)	17, 333
BstAUI	TGTACA	1 cut(s)	794
BstC8I	GCNNGC	2 cut(s)	169, 363
BstDEI	CTNAG	3 cut(s)	102, 132, 186
BstDSI	CCRYGG	2 cut(s)	490, 720
BstF5I	GGATG	2 cut(s)	693, 730
BstFNI	CGCG	1 cut(s)	124
BstHHI	GCGC	1 cut(s)	402
BstKTI	GATC	7 cut(s)	10, 229, 294, 321, 792, 877, 938
BstMAI	GTCTC	1 cut(s)	27
BstMBI	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
BstMWI	GCNNNNNNNGC	8 cut(s)	358, 383, 392, 482, 602, 662, 725, 739
BstNI	CCWGG	1 cut(s)	647
BstSCI	CCNGG	2 cut(s)	596, 645
BstSLI	GKGCMC	1 cut(s)	478
BstUI	CGCG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	398, 856
BstX2I	RGATCY	4 cut(s)	7, 291, 789, 874
BstYI	RGATCY	4 cut(s)	7, 291, 789, 874
BsuRI	GGCC	2 cut(s)	733, 742
BtgI	CCRYGG	2 cut(s)	490, 720
BtgZI	GCGATG	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	693, 730
BtsIMutI	CAGTG	3 cut(s)	43, 238, 436
BveI	ACCTGC	1 cut(s)	461
Cac8I	GCNNGC	2 cut(s)	169, 363
CciI	TCATGA	1 cut(s)	321
CfoI	GCGC	1 cut(s)	402
Cfr13I	GGNCC	1 cut(s)	731
Csp6I	GTAC	5 cut(s)	120, 146, 776, 795, 822
CviAII	CATG	4 cut(s)	311, 322, 332, 447
CviQI	GTAC	5 cut(s)	120, 146, 776, 795, 822
DdeI	CTNAG	3 cut(s)	102, 132, 186
DpnI	GATC	7 cut(s)	9, 228, 293, 320, 791, 876, 937
DpnII	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
Eam1104I	CTCTTC	2 cut(s)	17, 333
EarI	CTCTTC	2 cut(s)	17, 333
Eco57I	CTGAAG	4 cut(s)	99, 287, 570, 792
Eco88I	CYCGRG	1 cut(s)	928
EcoRI	GAATTC	3 cut(s)	514, 633, 826
EcoRII	CCWGG	1 cut(s)	645
FaeI	CATG	4 cut(s)	314, 325, 335, 450
FaiI	YATR	9 cut(s)	62, 151, 153, 297, 305, 312, 323, 333, 448
FalI	AAGNNNNNCTT	1 cut(s)	28
FatI	CATG	4 cut(s)	310, 321, 331, 446
FbaI	TGATCA	2 cut(s)	226, 318
Fnu4HI	GCNGC	2 cut(s)	387, 845
FokI	GGATG	2 cut(s)	700, 737
Fsp4HI	GCNGC	2 cut(s)	387, 845
FspBI	CTAG	5 cut(s)	626, 696, 705, 738, 917
GlaI	GCGC	1 cut(s)	401
GluI	GCNGC	2 cut(s)	387, 845
GsaI	CCCAGC	2 cut(s)	588, 732
HaeIII	GGCC	2 cut(s)	733, 742
HapII	CCGG	1 cut(s)	597
HhaI	GCGC	1 cut(s)	402
Hin1II	CATG	4 cut(s)	314, 325, 335, 450
Hin6I	GCGC	1 cut(s)	400
HinP1I	GCGC	1 cut(s)	400
HindIII	AAGCTT	1 cut(s)	363
HinfI	GANTC	4 cut(s)	128, 194, 781, 892
HpaII	CCGG	1 cut(s)	597
HphI	GGTGA	1 cut(s)	358
Hpy166II	GTNNAC	2 cut(s)	247, 476
Hpy188I	TCNGA	6 cut(s)	21, 79, 105, 187, 267, 420
Hpy188III	TCNNGA	4 cut(s)	322, 408, 462, 519
Hpy8I	GTNNAC	2 cut(s)	247, 476
Hpy99I	CGWCG	1 cut(s)	748
HpyAV	CCTTC	5 cut(s)	171, 337, 595, 744, 895
HpyCH4III	ACNGT	8 cut(s)	38, 145, 233, 431, 511, 563, 681, 972
HpyCH4V	TGCA	3 cut(s)	377, 476, 844
HpyF10VI	GCNNNNNNNGC	8 cut(s)	358, 383, 392, 482, 602, 662, 725, 739
HpyF3I	CTNAG	3 cut(s)	102, 132, 186
Hsp92II	CATG	4 cut(s)	314, 325, 335, 450
HspAI	GCGC	1 cut(s)	400
Ksp22I	TGATCA	2 cut(s)	226, 318
Kzo9I	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
LmnI	GCTCC	2 cut(s)	358, 420
Lsp1109I	GCAGC	2 cut(s)	398, 856
LweI	GCATC	3 cut(s)	73, 599, 715
MaeI	CTAG	5 cut(s)	626, 696, 705, 738, 917
MaeIII	GTNAC	3 cut(s)	139, 405, 425
MalI	GATC	7 cut(s)	9, 228, 293, 320, 791, 876, 937
MbiI	CCGCTC	1 cut(s)	933
MboI	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
MboII	GAAGA	7 cut(s)	4, 92, 263, 350, 603, 693, 869
MflI	RGATCY	4 cut(s)	7, 291, 789, 874
MhlI	GDGCHC	2 cut(s)	103, 478
MluCI	AATT	6 cut(s)	497, 514, 620, 633, 669, 826
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	582
MseI	TTAA	2 cut(s)	852, 888
MslI	CAYNNNNRTG	1 cut(s)	839
MspA1I	CMGCKG	2 cut(s)	485, 548
MspI	CCGG	1 cut(s)	597
MspR9I	CCNGG	2 cut(s)	598, 647
Mva1269I	GAATGC	2 cut(s)	331, 417
MvaI	CCWGG	1 cut(s)	647
MvnI	CGCG	1 cut(s)	124
MwoI	GCNNNNNNNGC	8 cut(s)	358, 383, 392, 482, 602, 662, 725, 739
NciI	CCSGG	1 cut(s)	598
NdeII	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
NlaIII	CATG	4 cut(s)	314, 325, 335, 450
NlaIV	GGNNCC	2 cut(s)	293, 422
NmuCI	GTSAC	2 cut(s)	405, 425
OliI	CACNNNNGTG	1 cut(s)	839
PagI	TCATGA	1 cut(s)	321
PaqCI	CACCTGC	1 cut(s)	461
PctI	GAATGC	2 cut(s)	331, 417
PfeI	GAWTC	3 cut(s)	194, 781, 892
PkrI	GCNGC	2 cut(s)	388, 846
PleI	GAGTC	1 cut(s)	136
PpsI	GAGTC	1 cut(s)	136
Psp6I	CCWGG	1 cut(s)	645
PspFI	CCCAGC	2 cut(s)	584, 728
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	2 cut(s)	293, 422
PspPI	GGNCC	1 cut(s)	731
PsuI	RGATCY	4 cut(s)	7, 291, 789, 874
PvuII	CAGCTG	1 cut(s)	485
RsaI	GTAC	5 cut(s)	121, 147, 777, 796, 823
RsaNI	GTAC	5 cut(s)	120, 146, 776, 795, 822
RseI	CAYNNNNRTG	1 cut(s)	839
SaqAI	TTAA	2 cut(s)	852, 888
SatI	GCNGC	2 cut(s)	387, 845
Sau3AI	GATC	7 cut(s)	7, 226, 291, 318, 789, 874, 935
Sau96I	GGNCC	1 cut(s)	731
ScaI	AGTACT	1 cut(s)	777
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	2 cut(s)	598, 647
SduI	GDGCHC	2 cut(s)	103, 478
SfaNI	GCATC	3 cut(s)	73, 599, 715
SfiI	GGCCNNNNNGGCC	1 cut(s)	739
SmiMI	CAYNNNNRTG	1 cut(s)	839
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	6 cut(s)	497, 514, 620, 633, 669, 826
SsiI	CCGC	3 cut(s)	115, 546, 933
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	5 cut(s)	626, 696, 705, 738, 917
StyD4I	CCNGG	2 cut(s)	596, 645
TaaI	ACNGT	8 cut(s)	38, 145, 233, 431, 511, 563, 681, 972
TaqI	TCGA	1 cut(s)	637
TasI	AATT	6 cut(s)	497, 514, 620, 633, 669, 826
TatI	WGTACW	2 cut(s)	775, 794
TfiI	GAWTC	3 cut(s)	194, 781, 892
Tru1I	TTAA	2 cut(s)	852, 888
Tru9I	TTAA	2 cut(s)	852, 888
TscAI	CASTG	3 cut(s)	43, 238, 436
TseFI	GTSAC	2 cut(s)	405, 425
TseI	GCWGC	2 cut(s)	386, 844
Tsp45I	GTSAC	2 cut(s)	405, 425
TspDTI	ATGAA	6 cut(s)	4, 17, 320, 338, 351, 953
TspGWI	ACGGA	1 cut(s)	479
TspRI	CASTG	3 cut(s)	43, 238, 436
VneI	GTGCAC	1 cut(s)	474
XapI	RAATTY	4 cut(s)	497, 514, 633, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	812
XspI	CTAG	5 cut(s)	626, 696, 705, 738, 917
ZrmI	AGTACT	1 cut(s)	777

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.