Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003877.1

Orthogroup ID

OG0031286

Physical Location & Seq

Genomic Coordinates Reverse (-)

91958 .. 93486

Gene Structure 1529 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ctgacacgtcaatcaggtgaccccccacctgggtgggtagaagaattttcggagaatcagagaatcccattctgtgaagttaccgaacaagactttattgacttgagcccaaaagtcccctggtcaaaggtgcgcatgttagtaagcgtgcgcctctcgcgcgccatagaaacaaccgtctcgaaagttactgtaccatataccaatgcttctgctggcaaaagaaggaactctgagattgaatcatcaaggagaaatggaaaagaaaaagctgatcacagtgagggcgatgtggacgaagaaacaaatattctgaagtgtctttttgacacgcaagggatccatagtgctatgaaccatgatgtgatcatgaatgcccatgatgaagagaaggtgaggcttgaggagcaagcttcccaagttgcacaaagagcagcagaagcattgcgccagtcacgaatgcttcggagccgtgacagtgtatctgttcccacatggactgggaaatcaggaatggcaggtgcaccatcagctgtccgtgggaaatttggttctactgtgaattcccgattgataagtaataccaaaccctccgctgaagtttccaacagtagaacaaatgggttcgtggctggggcatctgccgggaaggcattatcttctgctgaattactagcaagaattcgaggaaaccaggaaaaagctgttgaagctggaattgagcaacagtttgggatggcttctagttcttctagcagaggaaaagccgtggatgctgggccttctaggccgtcgcagaacttgggtggagtgccacctgaagtactgattcgtaagatctgtacattcctccaagaaagaggtggaagtacgaattctgccacaatagtgcagcattttaaggatagaataccctcaaaagatcttcccttgtttaagaatcttttgaaggaaatagcaaagctagagaaaaccccgagcggatcagtttgggttctaaagccagagtttcatcaacagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001207 GO:0001208 GO:0003674 GO:0003824 GO:0006139 GO:0006259 GO:0006281 GO:0006283 GO:0006289 GO:0006325 GO:0006355 GO:0006357 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009889 GO:0009987 GO:0010212 GO:0010332 GO:0010468 GO:0010556 GO:0010767 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033554 GO:0034641 GO:0034644 GO:0034728 GO:0042623 GO:0043170 GO:0043618 GO:0043620 GO:0043933 GO:0044237 GO:0044238 GO:0044260 GO:0046483 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051276 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0104004 GO:1901360 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko03420 map03420

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

340

Amino Acids

37.09

Weight (kDa)

9.32

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_Rad26_CSB	PF25875	275 - 338	2.9e-15	Rad26/CSB winged helix DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031286)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003877.1_g000016 Rmu_sc0003877.1_g000017

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	509
Acc16I	TGCGCA	1 cut(s)	134
Acc36I	ACCTGC	1 cut(s)	509
AccBSI	CCGCTC	1 cut(s)	981
AccII	CGCG	2 cut(s)	160, 162
AciI	CCGC	2 cut(s)	594, 981
AclWI	GGATC	3 cut(s)	334, 347, 991
AcsI	RAATTY	5 cut(s)	44, 545, 562, 681, 874
AcuI	CTGAAG	3 cut(s)	335, 618, 840
AfaI	GTAC	4 cut(s)	195, 825, 844, 871
AfiI	CCNNNNNNNGG	2 cut(s)	29, 30
AflIII	ACRYGT	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	242, 710, 949
AjiI	CACGTC	1 cut(s)	8
AjnI	CCWGG	3 cut(s)	28, 119, 693
AleI	CACNNNNGTG	2 cut(s)	31, 887
AloI	GAACNNNNNNTCC	2 cut(s)	535, 567
AluBI	AGCT	6 cut(s)	272, 413, 533, 704, 713, 964
AluI	AGCT	6 cut(s)	272, 413, 533, 704, 713, 964
Alw21I	GWGCWC	1 cut(s)	526
Alw26I	GTCTC	1 cut(s)	184
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	3 cut(s)	334, 347, 991
Ama87I	CYCGRG	1 cut(s)	976
AoxI	GGCC	2 cut(s)	779, 788
ApaLI	GTGCAC	1 cut(s)	522
ApeKI	GCWGC	2 cut(s)	434, 892
ApoI	RAATTY	5 cut(s)	44, 545, 562, 681, 874
AspLEI	GCGC	5 cut(s)	135, 153, 162, 164, 450
AspS9I	GGNCC	1 cut(s)	779
AsuC2I	CCSGG	1 cut(s)	646
AsuHPI	GGTGA	2 cut(s)	29, 406
AvaI	CYCGRG	1 cut(s)	976
BaeGI	GKGCMC	1 cut(s)	526
BamHI	GGATCC	1 cut(s)	339
BanII	GRGCYC	1 cut(s)	110
Bbv12I	GWGCWC	1 cut(s)	526
BbvI	GCAGC	2 cut(s)	446, 904
BccI	CCATC	2 cut(s)	535, 730
BceAI	ACGGC	3 cut(s)	456, 752, 775
BciT130I	CCWGG	3 cut(s)	30, 121, 695
BclI	TGATCA	2 cut(s)	274, 366
BcnI	CCSGG	1 cut(s)	646
BcoDI	GTCTC	1 cut(s)	184
BfaI	CTAG	5 cut(s)	674, 744, 753, 786, 965
BfuAI	ACCTGC	1 cut(s)	509
BglI	GCCNNNNNGGC	2 cut(s)	650, 787
BglII	AGATCT	2 cut(s)	837, 922
BisI	GCNGC	2 cut(s)	435, 893
BlsI	GCNGC	2 cut(s)	436, 894
BmcAI	AGTACT	1 cut(s)	825
Bme1390I	CCNGG	4 cut(s)	30, 121, 646, 695
BmeT110I	CYCGRG	1 cut(s)	976
BmgBI	CACGTC	1 cut(s)	8
BmgT120I	GGNCC	1 cut(s)	779
BmiI	GGNNCC	2 cut(s)	341, 470
BmrFI	CCNGG	4 cut(s)	30, 121, 646, 695
BmrI	ACTGGG	1 cut(s)	510
BmsI	GCATC	2 cut(s)	647, 763
BmuI	ACTGGG	1 cut(s)	510
BpuEI	CTTGAG	2 cut(s)	124, 422
BpuMI	CCSGG	1 cut(s)	646
BsaJI	CCNNGG	4 cut(s)	29, 119, 538, 768
Bsc4I	CCNNNNNNNGG	2 cut(s)	29, 30
Bse1I	ACTGG	2 cut(s)	451, 505
Bse3DI	GCAATG	1 cut(s)	443
BseBI	CCWGG	3 cut(s)	30, 121, 695
BseDI	CCNNGG	4 cut(s)	29, 119, 538, 768
BseGI	GGATG	2 cut(s)	741, 778
BseLI	CCNNNNNNNGG	2 cut(s)	29, 30
BseMI	GCAATG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	225
BseNI	ACTGG	2 cut(s)	451, 505
BsePI	GCGCGC	1 cut(s)	160
BseRI	GAGGAG	1 cut(s)	419
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	2 cut(s)	446, 904
BseYI	CCCAGC	2 cut(s)	632, 776
BsgI	GTGCAG	1 cut(s)	911
Bsh1236I	CGCG	2 cut(s)	160, 162
BshFI	GGCC	2 cut(s)	781, 790
BsiHKAI	GWGCWC	1 cut(s)	526
BsiHKCI	CYCGRG	1 cut(s)	976
BsiSI	CCGG	1 cut(s)	645
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	29, 30
BsmAI	GTCTC	1 cut(s)	184
BsmBI	CGTCTC	1 cut(s)	184
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	2 cut(s)	379, 465
BsnI	GGCC	2 cut(s)	781, 790
BsoBI	CYCGRG	1 cut(s)	976
Bsp1286I	GDGCHC	2 cut(s)	110, 526
Bsp1407I	TGTACA	1 cut(s)	842
Bsp143I	GATC	6 cut(s)	274, 339, 366, 837, 922, 983
BspACI	CCGC	2 cut(s)	594, 981
BspANI	GGCC	2 cut(s)	781, 790
BspCNI	CTCAG	1 cut(s)	226
BspFNI	CGCG	2 cut(s)	160, 162
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	341, 470
BspMI	ACCTGC	1 cut(s)	509
BspPI	GGATC	3 cut(s)	334, 347, 991
BsrBI	CCGCTC	1 cut(s)	981
BsrDI	GCAATG	1 cut(s)	443
BsrGI	TGTACA	1 cut(s)	842
BsrI	ACTGG	2 cut(s)	451, 505
BssECI	CCNNGG	4 cut(s)	29, 119, 538, 768
BssHII	GCGCGC	1 cut(s)	160
BssMI	GATC	6 cut(s)	274, 339, 366, 837, 922, 983
Bst2UI	CCWGG	3 cut(s)	30, 121, 695
Bst4CI	ACNGT	8 cut(s)	178, 193, 281, 479, 559, 611, 729, 1020
Bst6I	CTCTTC	1 cut(s)	381
BstAUI	TGTACA	1 cut(s)	842
BstC8I	GCNNGC	4 cut(s)	149, 162, 217, 411
BstDEI	CTNAG	1 cut(s)	234
BstDSI	CCRYGG	2 cut(s)	538, 768
BstEII	GGTNACC	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	741, 778
BstFNI	CGCG	2 cut(s)	160, 162
BstHHI	GCGC	5 cut(s)	135, 153, 162, 164, 450
BstKTI	GATC	6 cut(s)	277, 342, 369, 840, 925, 986
BstMAI	GTCTC	1 cut(s)	184
BstMBI	GATC	6 cut(s)	274, 339, 366, 837, 922, 983
BstNI	CCWGG	3 cut(s)	30, 121, 695
BstNSI	RCATGY	1 cut(s)	139
BstPI	GGTNACC	1 cut(s)	17
BstSCI	CCNGG	4 cut(s)	28, 119, 644, 693
BstSLI	GKGCMC	1 cut(s)	526
BstUI	CGCG	2 cut(s)	160, 162
BstV1I	GCAGC	2 cut(s)	446, 904
BstX2I	RGATCY	3 cut(s)	339, 837, 922
BstXI	CCANNNNNNTGG	1 cut(s)	33
BstYI	RGATCY	3 cut(s)	339, 837, 922
BsuRI	GGCC	2 cut(s)	781, 790
BtgI	CCRYGG	2 cut(s)	538, 768
BtgZI	GCGATG	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	741, 778
BtsIMutI	CAGTG	2 cut(s)	286, 484
BveI	ACCTGC	1 cut(s)	509
Cac8I	GCNNGC	4 cut(s)	149, 162, 217, 411
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	5 cut(s)	135, 153, 162, 164, 450
Cfr13I	GGNCC	1 cut(s)	779
Csp6I	GTAC	4 cut(s)	194, 824, 843, 870
CviAII	CATG	5 cut(s)	136, 359, 370, 380, 495
CviQI	GTAC	4 cut(s)	194, 824, 843, 870
DdeI	CTNAG	1 cut(s)	234
DpnI	GATC	6 cut(s)	276, 341, 368, 839, 924, 985
DpnII	GATC	6 cut(s)	274, 339, 366, 837, 922, 983
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Eco24I	GRGCYC	1 cut(s)	110
Eco57I	CTGAAG	3 cut(s)	335, 618, 840
Eco88I	CYCGRG	1 cut(s)	976
Eco91I	GGTNACC	1 cut(s)	17
EcoO65I	GGTNACC	1 cut(s)	17
EcoRI	GAATTC	3 cut(s)	562, 681, 874
EcoRII	CCWGG	3 cut(s)	28, 119, 693
EcoT38I	GRGCYC	1 cut(s)	110
Esp3I	CGTCTC	1 cut(s)	184
FaeI	CATG	5 cut(s)	139, 362, 373, 383, 498
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	5 cut(s)	135, 358, 369, 379, 494
FbaI	TGATCA	2 cut(s)	274, 366
Fnu4HI	GCNGC	2 cut(s)	435, 893
FokI	GGATG	2 cut(s)	748, 785
FriOI	GRGCYC	1 cut(s)	110
Fsp4HI	GCNGC	2 cut(s)	435, 893
FspAI	RTGCGCAY	1 cut(s)	134
FspBI	CTAG	5 cut(s)	674, 744, 753, 786, 965
FspI	TGCGCA	1 cut(s)	134
GlaI	GCGC	5 cut(s)	134, 152, 161, 163, 449
GluI	GCNGC	2 cut(s)	435, 893
GsaI	CCCAGC	2 cut(s)	636, 780
HaeIII	GGCC	2 cut(s)	781, 790
HapII	CCGG	1 cut(s)	645
HhaI	GCGC	5 cut(s)	135, 153, 162, 164, 450
Hin1II	CATG	5 cut(s)	139, 362, 373, 383, 498
Hin6I	GCGC	5 cut(s)	133, 151, 160, 162, 448
HinP1I	GCGC	5 cut(s)	133, 151, 160, 162, 448
HindIII	AAGCTT	1 cut(s)	411
HinfI	GANTC	5 cut(s)	55, 63, 242, 829, 940
HpaII	CCGG	1 cut(s)	645
HphI	GGTGA	2 cut(s)	29, 406
Hpy166II	GTNNAC	2 cut(s)	295, 524
Hpy188I	TCNGA	5 cut(s)	52, 60, 235, 315, 468
Hpy188III	TCNNGA	5 cut(s)	181, 370, 456, 510, 567
Hpy8I	GTNNAC	2 cut(s)	295, 524
Hpy99I	CGWCG	1 cut(s)	796
HpyAV	CCTTC	5 cut(s)	219, 385, 643, 792, 943
HpyCH4III	ACNGT	8 cut(s)	178, 193, 281, 479, 559, 611, 729, 1020
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	3 cut(s)	425, 524, 892
HpyF3I	CTNAG	1 cut(s)	234
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	5 cut(s)	139, 362, 373, 383, 498
HspAI	GCGC	5 cut(s)	133, 151, 160, 162, 448
Ksp22I	TGATCA	2 cut(s)	274, 366
Kzo9I	GATC	6 cut(s)	274, 339, 366, 837, 922, 983
LmnI	GCTCC	2 cut(s)	406, 468
Lsp1109I	GCAGC	2 cut(s)	446, 904
LweI	GCATC	2 cut(s)	647, 763
MaeI	CTAG	5 cut(s)	674, 744, 753, 786, 965
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	5 cut(s)	17, 79, 187, 453, 473
MalI	GATC	6 cut(s)	276, 341, 368, 839, 924, 985
MbiI	CCGCTC	1 cut(s)	981
MboI	GATC	6 cut(s)	274, 339, 366, 837, 922, 983
MboII	GAAGA	6 cut(s)	53, 311, 398, 651, 741, 917
MflI	RGATCY	3 cut(s)	339, 837, 922
MhlI	GDGCHC	2 cut(s)	110, 526
MluCI	AATT	7 cut(s)	44, 545, 562, 668, 681, 717, 874
MmeI	TCCRAC	1 cut(s)	630
MseI	TTAA	2 cut(s)	900, 936
MslI	CAYNNNNRTG	2 cut(s)	31, 887
MspA1I	CMGCKG	2 cut(s)	533, 596
MspI	CCGG	1 cut(s)	645
MspR9I	CCNGG	4 cut(s)	30, 121, 646, 695
Mva1269I	GAATGC	2 cut(s)	379, 465
MvaI	CCWGG	3 cut(s)	30, 121, 695
MvnI	CGCG	2 cut(s)	160, 162
NciI	CCSGG	1 cut(s)	646
NdeII	GATC	6 cut(s)	274, 339, 366, 837, 922, 983
NlaIII	CATG	5 cut(s)	139, 362, 373, 383, 498
NlaIV	GGNNCC	2 cut(s)	341, 470
NmuCI	GTSAC	3 cut(s)	17, 453, 473
NsbI	TGCGCA	1 cut(s)	134
NspI	RCATGY	1 cut(s)	139
OliI	CACNNNNGTG	2 cut(s)	31, 887
PagI	TCATGA	1 cut(s)	369
PaqCI	CACCTGC	1 cut(s)	509
PauI	GCGCGC	1 cut(s)	160
PctI	GAATGC	2 cut(s)	379, 465
PfeI	GAWTC	5 cut(s)	55, 63, 242, 829, 940
PkrI	GCNGC	2 cut(s)	436, 894
Psp6I	CCWGG	3 cut(s)	28, 119, 693
PspEI	GGTNACC	1 cut(s)	17
PspFI	CCCAGC	2 cut(s)	632, 776
PspGI	CCWGG	3 cut(s)	28, 119, 693
PspN4I	GGNNCC	2 cut(s)	341, 470
PspPI	GGNCC	1 cut(s)	779
PsuI	RGATCY	3 cut(s)	339, 837, 922
PteI	GCGCGC	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	533
RsaI	GTAC	4 cut(s)	195, 825, 844, 871
RsaNI	GTAC	4 cut(s)	194, 824, 843, 870
RseI	CAYNNNNRTG	2 cut(s)	31, 887
SaqAI	TTAA	2 cut(s)	900, 936
SatI	GCNGC	2 cut(s)	435, 893
Sau3AI	GATC	6 cut(s)	274, 339, 366, 837, 922, 983
Sau96I	GGNCC	1 cut(s)	779
ScaI	AGTACT	1 cut(s)	825
ScrFI	CCNGG	4 cut(s)	30, 121, 646, 695
SduI	GDGCHC	2 cut(s)	110, 526
SfaNI	GCATC	2 cut(s)	647, 763
SfiI	GGCCNNNNNGGCC	1 cut(s)	787
SmiMI	CAYNNNNRTG	2 cut(s)	31, 887
SmlI	CTYRAG	2 cut(s)	103, 401
SmoI	CTYRAG	2 cut(s)	103, 401
Sse9I	AATT	7 cut(s)	44, 545, 562, 668, 681, 717, 874
SsiI	CCGC	2 cut(s)	594, 981
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	5 cut(s)	674, 744, 753, 786, 965
StyD4I	CCNGG	4 cut(s)	28, 119, 644, 693
TaaI	ACNGT	8 cut(s)	178, 193, 281, 479, 559, 611, 729, 1020
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	2 cut(s)	182, 685
TasI	AATT	7 cut(s)	44, 545, 562, 668, 681, 717, 874
TatI	WGTACW	2 cut(s)	823, 842
TfiI	GAWTC	5 cut(s)	55, 63, 242, 829, 940
Tru1I	TTAA	2 cut(s)	900, 936
Tru9I	TTAA	2 cut(s)	900, 936
TscAI	CASTG	2 cut(s)	286, 484
TseFI	GTSAC	3 cut(s)	17, 453, 473
TseI	GCWGC	2 cut(s)	434, 892
Tsp45I	GTSAC	3 cut(s)	17, 453, 473
TspDTI	ATGAA	4 cut(s)	368, 386, 399, 1001
TspGWI	ACGGA	1 cut(s)	527
TspRI	CASTG	2 cut(s)	286, 484
VneI	GTGCAC	1 cut(s)	522
XapI	RAATTY	5 cut(s)	44, 545, 562, 681, 874
XceI	RCATGY	1 cut(s)	139
XcmI	CCANNNNNNNNNTGG	2 cut(s)	117, 860
XspI	CTAG	5 cut(s)	674, 744, 753, 786, 965
ZrmI	AGTACT	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.