Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003942.1

Orthogroup ID

OG0022725

Physical Location & Seq

Genomic Coordinates Reverse (-)

54784 .. 55050

Gene Structure 267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003942.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

atgacggggagatttgcggaatcaagaaaggagctcgatgctcttgtctccgaggagtcactggaaattgtgccatttcttatattgggaaacaagattcacacacctcaagctgcctcagaggatgagctgagttattcaatgggtgtgaccaagtacagagctggtaaggggaaggtcaatcaggccagttacaacctccgcccccttgaggtgttcatgtgcagcattgcccgcaaaatgggttatggcgaaggattcaggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0017076 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0044464 GO:0071944 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko04141 ko05134 map04141 map05134

Pfam Domains

Protein Families

Arf

Protein Analysis

88

Amino Acids

9.82

Weight (kDa)

7.86

Isoelectric Point (pI)

34.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0022725)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0424561
rosa_multiflora	Rmu_sc0003942.1_g000011
rosa_rugosa	Rorug04G0198000
rosa_samantha	Rh4CG271400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	17, 202, 235
AfaI	GTAC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	211, 241
AgsI	TTSAA	1 cut(s)	141
AluBI	AGCT	4 cut(s)	34, 113, 130, 164
AluI	AGCT	4 cut(s)	34, 113, 130, 164
Alw21I	GWGCWC	1 cut(s)	36
Alw26I	GTCTC	1 cut(s)	52
AoxI	GGCC	1 cut(s)	186
ApeKI	GCWGC	2 cut(s)	113, 225
BanII	GRGCYC	1 cut(s)	36
Bbv12I	GWGCWC	1 cut(s)	36
BbvI	GCAGC	2 cut(s)	100, 237
BcoDI	GTCTC	1 cut(s)	52
BisI	GCNGC	2 cut(s)	114, 226
BlsI	GCNGC	2 cut(s)	115, 227
BmsI	GCATC	1 cut(s)	28
BpuEI	CTTGAG	2 cut(s)	93, 230
BsaJI	CCNNGG	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	2 cut(s)	211, 241
Bse1I	ACTGG	2 cut(s)	66, 189
Bse3DI	GCAATG	1 cut(s)	228
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	2 cut(s)	211, 241
BseMI	GCAATG	1 cut(s)	228
BseMII	CTCAG	2 cut(s)	122, 132
BseNI	ACTGG	2 cut(s)	66, 189
BseRI	GAGGAG	1 cut(s)	68
BseXI	GCAGC	2 cut(s)	100, 237
BsgI	GTGCAG	1 cut(s)	244
BshFI	GGCC	1 cut(s)	188
BsiHKAI	GWGCWC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	211, 241
BsmAI	GTCTC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	36
BspACI	CCGC	3 cut(s)	17, 202, 235
BspANI	GGCC	1 cut(s)	188
BspCNI	CTCAG	2 cut(s)	123, 131
BsrDI	GCAATG	1 cut(s)	228
BsrI	ACTGG	2 cut(s)	66, 189
BssECI	CCNNGG	1 cut(s)	51
BstC8I	GCNNGC	1 cut(s)	235
BstDEI	CTNAG	2 cut(s)	118, 131
BstF5I	GGATG	1 cut(s)	130
BstMAI	GTCTC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	100, 237
BsuRI	GGCC	1 cut(s)	188
BtsCI	GGATG	1 cut(s)	130
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	1 cut(s)	235
Csp6I	GTAC	1 cut(s)	157
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	5 cut(s)	34, 113, 130, 164, 188
CviKI_1	RGCY	5 cut(s)	34, 113, 130, 164, 188
CviQI	GTAC	1 cut(s)	157
DdeI	CTNAG	2 cut(s)	118, 131
EciI	GGCGGA	1 cut(s)	191
Ecl136II	GAGCTC	1 cut(s)	34
Eco24I	GRGCYC	1 cut(s)	36
Eco53kI	GAGCTC	1 cut(s)	34
EcoICRI	GAGCTC	1 cut(s)	34
EcoT38I	GRGCYC	1 cut(s)	36
FaeI	CATG	1 cut(s)	223
FaiI	YATR	3 cut(s)	83, 221, 249
FatI	CATG	1 cut(s)	219
FauI	CCCGC	1 cut(s)	242
Fnu4HI	GCNGC	2 cut(s)	114, 226
FokI	GGATG	1 cut(s)	137
FriOI	GRGCYC	1 cut(s)	36
Fsp4HI	GCNGC	2 cut(s)	114, 226
GluI	GCNGC	2 cut(s)	114, 226
HaeIII	GGCC	1 cut(s)	188
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	4 cut(s)	20, 56, 97, 258
Hpy188I	TCNGA	2 cut(s)	52, 121
Hpy188III	TCNNGA	1 cut(s)	24
HpyAV	CCTTC	2 cut(s)	169, 248
HpyCH4V	TGCA	1 cut(s)	225
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	2 cut(s)	118, 131
Hsp92II	CATG	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	5 cut(s)	47, 150, 170, 202, 247
Lsp1109I	GCAGC	2 cut(s)	100, 237
LweI	GCATC	1 cut(s)	28
MaeIII	GTNAC	3 cut(s)	57, 148, 191
MhlI	GDGCHC	1 cut(s)	36
MluCI	AATT	1 cut(s)	66
MlyI	GAGTC	1 cut(s)	65
MnlI	CCTC	6 cut(s)	46, 115, 117, 127, 205, 209
MwoI	GCNNNNNNNGC	1 cut(s)	234
NlaIII	CATG	1 cut(s)	223
NmuCI	GTSAC	2 cut(s)	57, 148
PfeI	GAWTC	3 cut(s)	20, 97, 258
PkrI	GCNGC	2 cut(s)	115, 227
PleI	GAGTC	1 cut(s)	64
PpsI	GAGTC	1 cut(s)	64
Psp124BI	GAGCTC	1 cut(s)	36
RsaI	GTAC	1 cut(s)	158
RsaNI	GTAC	1 cut(s)	157
SacI	GAGCTC	1 cut(s)	36
SatI	GCNGC	2 cut(s)	114, 226
SchI	GAGTC	1 cut(s)	65
SduI	GDGCHC	1 cut(s)	36
SetI	ASST	9 cut(s)	36, 109, 115, 132, 166, 180, 201, 216, 266
SfaNI	GCATC	1 cut(s)	28
SmlI	CTYRAG	2 cut(s)	108, 209
SmoI	CTYRAG	2 cut(s)	108, 209
Sse9I	AATT	1 cut(s)	66
SsiI	CCGC	3 cut(s)	17, 202, 235
SstI	GAGCTC	1 cut(s)	36
TaqI	TCGA	1 cut(s)	36
TasI	AATT	1 cut(s)	66
TatI	WGTACW	1 cut(s)	156
TfiI	GAWTC	3 cut(s)	20, 97, 258
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	2 cut(s)	57, 148
TseI	GCWGC	2 cut(s)	113, 225
Tsp45I	GTSAC	2 cut(s)	57, 148
TspDTI	ATGAA	1 cut(s)	208
TspRI	CASTG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.