Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004015.1

Orthogroup ID

OG0031290

Physical Location & Seq

Genomic Coordinates Reverse (-)

83687 .. 84097

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004015.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ctgaaacggtacggaaagatagagggcaagaatgtcttttattggttccagaaccacaaggctcgggataaacagaagaagaagatcacttcggatgttcatgtgcccatgcaaagatcagggcttgttggtaatggtaccaattggaaacctgaggataagtatattaacttcggatcttctgcatctgcttctgcttcttcagctggtgttggtggatccattaaggagattgaaacccttccactgtttcccatgcacggtgaggacatatttggtaacatgaagactacttccgagggaggtagcggctatgtctactactccggtggctcgggcggctataacgatgggtctcgcatttcccttgagctcagcctcaactcctccggagctgctgacttggcttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001763 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009653 GO:0009791 GO:0009888 GO:0009889 GO:0009908 GO:0009933 GO:0009987 GO:0010014 GO:0010016 GO:0010223 GO:0010346 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019827 GO:0022412 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048507 GO:0048532 GO:0048608 GO:0048646 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0080166 GO:0090506 GO:0090567 GO:0098727 GO:0099402 GO:0140110 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

136

Amino Acids

14.59

Weight (kDa)

9.08

Isoelectric Point (pI)

32.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031290)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004015.1_g000021
rosa_rugosa	Rorug05G0579100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	137
AccB1I	GGYRCC	1 cut(s)	137
AccI	GTMKAC	1 cut(s)	318
AccIII	TCCGGA	1 cut(s)	389
AciI	CCGC	2 cut(s)	309, 339
AclWI	GGATC	3 cut(s)	184, 213, 226
AcuI	CTGAAG	1 cut(s)	186
AfaI	GTAC	2 cut(s)	11, 139
AfiI	CCNNNNNNNGG	1 cut(s)	260
AgsI	TTSAA	1 cut(s)	236
AluBI	AGCT	3 cut(s)	206, 373, 395
AluI	AGCT	3 cut(s)	206, 373, 395
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	360
AlwI	GGATC	3 cut(s)	184, 213, 226
Ama87I	CYCGRG	2 cut(s)	63, 334
Aor13HI	TCCGGA	1 cut(s)	389
ApeKI	GCWGC	1 cut(s)	395
Asp700I	GAANNNNTTC	1 cut(s)	240
Asp718I	GGTACC	1 cut(s)	137
AsuHPI	GGTGA	1 cut(s)	275
AvaI	CYCGRG	2 cut(s)	63, 334
AxyI	CCTNAGG	1 cut(s)	153
BaeGI	GKGCMC	1 cut(s)	108
BamHI	GGATCC	1 cut(s)	218
BanI	GGYRCC	1 cut(s)	137
BanII	GRGCYC	1 cut(s)	375
BarI	GAAGNNNNNNTAC	2 cut(s)	155, 187
BbsI	GAAGAC	1 cut(s)	293
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	1 cut(s)	344
BcoDI	GTCTC	1 cut(s)	360
BisI	GCNGC	3 cut(s)	310, 340, 396
BlpI	GCTNAGC	1 cut(s)	374
BlsI	GCNGC	3 cut(s)	311, 341, 397
BmeT110I	CYCGRG	2 cut(s)	63, 334
BmiI	GGNNCC	3 cut(s)	47, 139, 220
BmsI	GCATC	1 cut(s)	194
BpiI	GAAGAC	1 cut(s)	293
Bpu1102I	GCTNAGC	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	389
BsaI	GGTCTC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	297
BsaWI	WCCGGW	2 cut(s)	326, 389
Bsc4I	CCNNNNNNNGG	1 cut(s)	260
Bse21I	CCTNAGG	1 cut(s)	153
BseAI	TCCGGA	1 cut(s)	389
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	100
BseLI	CCNNNNNNNGG	1 cut(s)	260
BseMII	CTCAG	2 cut(s)	144, 388
BseRI	GAGGAG	1 cut(s)	376
BseSI	GKGCMC	1 cut(s)	108
BseXI	GCAGC	1 cut(s)	382
BshNI	GGYRCC	1 cut(s)	137
BsiHKAI	GWGCWC	1 cut(s)	375
BsiHKCI	CYCGRG	2 cut(s)	63, 334
BsiSI	CCGG	2 cut(s)	327, 390
BslI	CCNNNNNNNGG	1 cut(s)	260
BsmAI	GTCTC	1 cut(s)	360
Bso31I	GGTCTC	1 cut(s)	360
BsoBI	CYCGRG	2 cut(s)	63, 334
Bsp1286I	GDGCHC	2 cut(s)	108, 375
Bsp13I	TCCGGA	1 cut(s)	389
Bsp143I	GATC	4 cut(s)	84, 116, 176, 218
Bsp1720I	GCTNAGC	1 cut(s)	374
BspACI	CCGC	2 cut(s)	309, 339
BspCNI	CTCAG	2 cut(s)	145, 387
BspEI	TCCGGA	1 cut(s)	389
BspLI	GGNNCC	3 cut(s)	47, 139, 220
BspPI	GGATC	3 cut(s)	184, 213, 226
BspT107I	GGYRCC	1 cut(s)	137
BspTNI	GGTCTC	1 cut(s)	360
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	4 cut(s)	84, 116, 176, 218
Bst4CI	ACNGT	3 cut(s)	9, 249, 263
BstDEI	CTNAG	3 cut(s)	153, 374, 408
BstF5I	GGATG	1 cut(s)	100
BstKTI	GATC	4 cut(s)	87, 119, 179, 221
BstMAI	GTCTC	1 cut(s)	360
BstMBI	GATC	4 cut(s)	84, 116, 176, 218
BstMWI	GCNNNNNNNGC	3 cut(s)	203, 339, 404
BstSLI	GKGCMC	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	382
BstV2I	GAAGAC	1 cut(s)	293
BstX2I	RGATCY	2 cut(s)	176, 218
BstYI	RGATCY	2 cut(s)	176, 218
Bsu36I	CCTNAGG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	100
BtsIMutI	CAGTG	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	10, 138
CviAII	CATG	4 cut(s)	101, 109, 256, 283
CviQI	GTAC	2 cut(s)	10, 138
DdeI	CTNAG	3 cut(s)	153, 374, 408
DpnI	GATC	4 cut(s)	86, 118, 178, 220
DpnII	GATC	4 cut(s)	84, 116, 176, 218
Ecl136II	GAGCTC	1 cut(s)	373
Eco24I	GRGCYC	1 cut(s)	375
Eco31I	GGTCTC	1 cut(s)	360
Eco53kI	GAGCTC	1 cut(s)	373
Eco57I	CTGAAG	1 cut(s)	186
Eco81I	CCTNAGG	1 cut(s)	153
Eco88I	CYCGRG	2 cut(s)	63, 334
EcoICRI	GAGCTC	1 cut(s)	373
EcoT38I	GRGCYC	1 cut(s)	375
FaeI	CATG	4 cut(s)	104, 112, 259, 286
FaiI	YATR	8 cut(s)	102, 110, 165, 257, 272, 284, 315, 345
FalI	AAGNNNNNCTT	2 cut(s)	20, 52
FatI	CATG	4 cut(s)	100, 108, 255, 282
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	3 cut(s)	310, 340, 396
FokI	GGATG	1 cut(s)	107
FriOI	GRGCYC	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	310, 340, 396
GluI	GCNGC	3 cut(s)	310, 340, 396
HapII	CCGG	2 cut(s)	327, 390
Hin1II	CATG	4 cut(s)	104, 112, 259, 286
HpaII	CCGG	2 cut(s)	327, 390
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	1 cut(s)	319
Hpy188I	TCNGA	3 cut(s)	94, 176, 298
Hpy188III	TCNNGA	3 cut(s)	49, 65, 390
Hpy8I	GTNNAC	1 cut(s)	319
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	3 cut(s)	9, 249, 263
HpyCH4V	TGCA	3 cut(s)	112, 185, 259
HpyF10VI	GCNNNNNNNGC	3 cut(s)	203, 339, 404
HpyF3I	CTNAG	3 cut(s)	153, 374, 408
Hsp92II	CATG	4 cut(s)	104, 112, 259, 286
Kpn2I	TCCGGA	1 cut(s)	389
KpnI	GGTACC	1 cut(s)	141
Kzo9I	GATC	4 cut(s)	84, 116, 176, 218
LmnI	GCTCC	1 cut(s)	392
LpnPI	CCDG	6 cut(s)	62, 105, 165, 192, 340, 403
Lsp1109I	GCAGC	1 cut(s)	382
LweI	GCATC	1 cut(s)	194
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	4 cut(s)	86, 118, 178, 220
MboI	GATC	4 cut(s)	84, 116, 176, 218
MboII	GAAGA	6 cut(s)	88, 91, 94, 171, 192, 298
MfeI	CAATTG	1 cut(s)	142
MflI	RGATCY	2 cut(s)	176, 218
MhlI	GDGCHC	2 cut(s)	108, 375
MluCI	AATT	1 cut(s)	142
MnlI	CCTC	7 cut(s)	16, 148, 259, 292, 296, 389, 397
MroI	TCCGGA	1 cut(s)	389
MroXI	GAANNNNTTC	1 cut(s)	240
MseI	TTAA	2 cut(s)	168, 225
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	2 cut(s)	327, 390
MunI	CAATTG	1 cut(s)	142
MwoI	GCNNNNNNNGC	3 cut(s)	203, 339, 404
NdeII	GATC	4 cut(s)	84, 116, 176, 218
NlaIII	CATG	4 cut(s)	104, 112, 259, 286
NlaIV	GGNNCC	3 cut(s)	47, 139, 220
PdmI	GAANNNNTTC	1 cut(s)	240
PkrI	GCNGC	3 cut(s)	311, 341, 397
Psp124BI	GAGCTC	1 cut(s)	375
PspN4I	GGNNCC	3 cut(s)	47, 139, 220
PsuI	RGATCY	2 cut(s)	176, 218
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	2 cut(s)	11, 139
RsaNI	GTAC	2 cut(s)	10, 138
SacI	GAGCTC	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	168, 225
SatI	GCNGC	3 cut(s)	310, 340, 396
Sau3AI	GATC	4 cut(s)	84, 116, 176, 218
SduI	GDGCHC	2 cut(s)	108, 375
SetI	ASST	5 cut(s)	154, 208, 307, 375, 397
SfaNI	GCATC	1 cut(s)	194
SmlI	CTYRAG	1 cut(s)	368
SmoI	CTYRAG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	142
SsiI	CCGC	2 cut(s)	309, 339
SstI	GAGCTC	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	9, 249, 263
TasI	AATT	1 cut(s)	142
TauI	GCSGC	2 cut(s)	312, 342
Tru1I	TTAA	2 cut(s)	168, 225
Tru9I	TTAA	2 cut(s)	168, 225
TscAI	CASTG	1 cut(s)	252
TseI	GCWGC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	89, 299
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	318
XmnI	GAANNNNTTC	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.