Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004279.1

Orthogroup ID

OG0006927

Physical Location & Seq

Genomic Coordinates Forward (+)

83590 .. 86134

Gene Structure 2545 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atggaattgcaaatcagtagcaaatcagaagaagtgaagtcagcagaagaagcgaagtctgctggaggctctccaactcatacccaaggaaagtttcttcagtattgtgagatctgtggtggccatgtcggtcacaaatgctgggattgcccagacaaatcaaagggaatgggaatgggttgtcatgaatgttgcggcccctgtaaaaagaatgtcgatgatgatgatgatggtgttgagcactggtctattgaaatggtcaaatactgtatcatttgtgggggtatgggtaaacactggggtgatgctgcccctttcgtttttagccagtgtggtgagctagttcatgttaagataccagcaggcaagcgatgtgggtttgttcagttcgcagactggagccgtgctgaagaggctttgcaaggattaaacaattctcagattggtggacaaaatatccgactttcttggggtcgcagtccttcaaacaagcagctcaggcagatcctaacaaatggaatgctggctattatggatatgcaccaacccccgagggatatggatatgcccaagtatcccaagaacctaacatgtactatggagggtatcctgctggatatggcaattaccagcagtcacagcagcaacagcagcagcaagtgggttatagttgagtgtactgttgagctttttatgcgttcaactctagagacctataataatattatgatactggttgagatatttttctctgttttctctgagaagtactatttcggatgtaatcgtgtatcactaagtttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

268

Amino Acids

29.85

Weight (kDa)

5.99

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	108 - 154	6.9e-08	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006927)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g03960
rosa_laevigata	RLG00000031143 RLG00000031144 RLG00000031145 RLG00000031146 RLG00000031147
rosa_multiflora	Rmu_sc0004279.1_g000016 Rmu_sc0004279.1_g000019 Rmu_sc0004279.1_g000021 Rmu_sc0004574.1_g000005 Rmu_sc0009787.1_g000006 Rmu_sc0013150.1_g000004
rosa_roxburghii	Rroxscaffold_1G00072450 Rroxscaffold_1G00072460 Rroxscaffold_1G00072470 Rroxscaffold_1G00072480
rosa_rugosa	Rorug04G0403900
rosa_samantha	Rh2AG295800 Rh2BG304800 Rh2DG319800 Rh5AG030700 Rh5CG032900 Rh5CG033200
rosa_wichuraiana	Rw2G023560 Rw5G002860 Rw5G002870

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	195
AclWI	GGATC	1 cut(s)	499
AcoI	YGGCCR	1 cut(s)	121
AcuI	CTGAAG	2 cut(s)	83, 429
AfaI	GTAC	3 cut(s)	595, 679, 770
AflIII	ACRYGT	1 cut(s)	590
AgsI	TTSAA	3 cut(s)	254, 486, 702
AjuI	GAANNNNNNNTTGG	2 cut(s)	78, 110
AleI	CACNNNNGTG	1 cut(s)	300
AluBI	AGCT	3 cut(s)	340, 496, 688
AluI	AGCT	3 cut(s)	340, 496, 688
Alw21I	GWGCWC	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	704
AlwI	GGATC	1 cut(s)	499
Ama87I	CYCGRG	1 cut(s)	550
AoxI	GGCC	2 cut(s)	121, 196
ApeKI	GCWGC	5 cut(s)	308, 493, 642, 651, 654
AspS9I	GGNCC	1 cut(s)	197
AsuHPI	GGTGA	2 cut(s)	314, 347
AvaI	CYCGRG	1 cut(s)	550
BalI	TGGCCA	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	243
BbvI	GCAGC	5 cut(s)	295, 505, 654, 663, 666
BccI	CCATC	1 cut(s)	224
BceAI	ACGGC	1 cut(s)	387
BciVI	GTATCC	2 cut(s)	585, 617
BcoDI	GTCTC	1 cut(s)	704
BfaI	CTAG	2 cut(s)	341, 707
BfuI	GTATCC	2 cut(s)	585, 617
BglII	AGATCT	1 cut(s)	111
BisI	GCNGC	6 cut(s)	196, 309, 494, 643, 652, 655
BlsI	GCNGC	6 cut(s)	197, 310, 495, 644, 653, 656
BmcAI	AGTACT	1 cut(s)	770
BmeT110I	CYCGRG	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	197
BmiI	GGNNCC	2 cut(s)	199, 401
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	295
BmuI	ACTGGG	1 cut(s)	307
BpmI	CTGGAG	2 cut(s)	84, 418
Bpu10I	CCTNAGC	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	704
BsaJI	CCNNGG	2 cut(s)	85, 551
Bse1I	ACTGG	5 cut(s)	248, 302, 328, 401, 738
BseDI	CCNNGG	2 cut(s)	85, 551
BseGI	GGATG	1 cut(s)	785
BseMII	CTCAG	3 cut(s)	452, 511, 753
BseNI	ACTGG	5 cut(s)	248, 302, 328, 401, 738
BseXI	GCAGC	5 cut(s)	295, 505, 654, 663, 666
BseYI	CCCAGC	1 cut(s)	141
BshFI	GGCC	2 cut(s)	123, 198
BsiHKAI	GWGCWC	1 cut(s)	243
BsiHKCI	CYCGRG	1 cut(s)	550
BsmAI	GTCTC	1 cut(s)	704
BsmI	GAATGC	1 cut(s)	525
BsnI	GGCC	2 cut(s)	123, 198
Bso31I	GGTCTC	1 cut(s)	704
BsoBI	CYCGRG	1 cut(s)	550
Bsp1286I	GDGCHC	1 cut(s)	243
Bsp143I	GATC	2 cut(s)	111, 504
BspACI	CCGC	1 cut(s)	195
BspANI	GGCC	2 cut(s)	123, 198
BspCNI	CTCAG	3 cut(s)	451, 510, 754
BspHI	TCATGA	1 cut(s)	184
BspLI	GGNNCC	2 cut(s)	199, 401
BspPI	GGATC	1 cut(s)	499
BspTNI	GGTCTC	1 cut(s)	704
BsrI	ACTGG	5 cut(s)	248, 302, 328, 401, 738
BssECI	CCNNGG	2 cut(s)	85, 551
BssMI	GATC	2 cut(s)	111, 504
BssT1I	CCWWGG	1 cut(s)	85
Bst4CI	ACNGT	2 cut(s)	269, 682
Bst6I	CTCTTC	1 cut(s)	405
BstC8I	GCNNGC	3 cut(s)	364, 368, 525
BstDEI	CTNAG	4 cut(s)	438, 497, 762, 797
BstF5I	GGATG	1 cut(s)	785
BstKTI	GATC	2 cut(s)	114, 507
BstMAI	GTCTC	1 cut(s)	704
BstMBI	GATC	2 cut(s)	111, 504
BstMWI	GCNNNNNNNGC	9 cut(s)	50, 59, 147, 413, 499, 639, 648, 651, 694
BstNSI	RCATGY	1 cut(s)	594
BstV1I	GCAGC	5 cut(s)	295, 505, 654, 663, 666
BstX2I	RGATCY	2 cut(s)	111, 504
BstYI	RGATCY	2 cut(s)	111, 504
BsuI	GTATCC	2 cut(s)	585, 617
BsuRI	GGCC	2 cut(s)	123, 198
BtgZI	GCGATG	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	785
BtsIMutI	CAGTG	3 cut(s)	241, 295, 335
Cac8I	GCNNGC	3 cut(s)	364, 368, 525
CciI	TCATGA	1 cut(s)	184
Cfr13I	GGNCC	1 cut(s)	197
Csp6I	GTAC	3 cut(s)	594, 678, 769
CspCI	CAANNNNNGTGG	2 cut(s)	355, 390
CviAII	CATG	4 cut(s)	125, 185, 347, 591
CviQI	GTAC	3 cut(s)	594, 678, 769
DdeI	CTNAG	4 cut(s)	438, 497, 762, 797
DpnI	GATC	2 cut(s)	113, 506
DpnII	GATC	2 cut(s)	111, 504
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	1 cut(s)	85
Eco31I	GGTCTC	1 cut(s)	704
Eco57I	CTGAAG	2 cut(s)	83, 429
Eco88I	CYCGRG	1 cut(s)	550
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	4 cut(s)	128, 188, 350, 594
FatI	CATG	4 cut(s)	124, 184, 346, 590
Fnu4HI	GCNGC	6 cut(s)	196, 309, 494, 643, 652, 655
FokI	GGATG	1 cut(s)	792
Fsp4HI	GCNGC	6 cut(s)	196, 309, 494, 643, 652, 655
FspBI	CTAG	2 cut(s)	341, 707
GluI	GCNGC	6 cut(s)	196, 309, 494, 643, 652, 655
GsaI	CCCAGC	1 cut(s)	145
GsuI	CTGGAG	2 cut(s)	84, 418
HaeIII	GGCC	2 cut(s)	123, 198
Hin1II	CATG	4 cut(s)	128, 188, 350, 594
HphI	GGTGA	2 cut(s)	314, 347
Hpy166II	GTNNAC	3 cut(s)	293, 449, 678
Hpy188I	TCNGA	5 cut(s)	28, 441, 461, 763, 779
Hpy188III	TCNNGA	2 cut(s)	185, 707
Hpy8I	GTNNAC	3 cut(s)	293, 449, 678
HpyAV	CCTTC	1 cut(s)	492
HpyCH4III	ACNGT	2 cut(s)	269, 682
HpyCH4V	TGCA	3 cut(s)	10, 421, 541
HpyF10VI	GCNNNNNNNGC	9 cut(s)	50, 59, 147, 413, 499, 639, 648, 651, 694
HpyF3I	CTNAG	4 cut(s)	438, 497, 762, 797
Hsp92II	CATG	4 cut(s)	128, 188, 350, 594
Kzo9I	GATC	2 cut(s)	111, 504
LmnI	GCTCC	1 cut(s)	399
Lsp1109I	GCAGC	5 cut(s)	295, 505, 654, 663, 666
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	2 cut(s)	341, 707
MaeIII	GTNAC	2 cut(s)	131, 635
MalI	GATC	2 cut(s)	113, 506
MboI	GATC	2 cut(s)	111, 504
MboII	GAAGA	4 cut(s)	41, 59, 89, 422
MflI	RGATCY	2 cut(s)	111, 504
MhlI	GDGCHC	1 cut(s)	243
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	3 cut(s)	5, 433, 624
MluNI	TGGCCA	1 cut(s)	123
MmeI	TCCRAC	2 cut(s)	98, 484
MnlI	CCTC	4 cut(s)	59, 406, 546, 595
Mox20I	TGGCCA	1 cut(s)	123
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	3 cut(s)	351, 428, 805
MslI	CAYNNNNRTG	1 cut(s)	300
Msp20I	TGGCCA	1 cut(s)	123
Mva1269I	GAATGC	1 cut(s)	525
MwoI	GCNNNNNNNGC	9 cut(s)	50, 59, 147, 413, 499, 639, 648, 651, 694
NdeII	GATC	2 cut(s)	111, 504
NlaIII	CATG	4 cut(s)	128, 188, 350, 594
NlaIV	GGNNCC	2 cut(s)	199, 401
NmuCI	GTSAC	2 cut(s)	131, 635
NspI	RCATGY	1 cut(s)	594
OliI	CACNNNNGTG	1 cut(s)	300
PagI	TCATGA	1 cut(s)	184
PciI	ACATGT	1 cut(s)	590
PctI	GAATGC	1 cut(s)	525
PkrI	GCNGC	6 cut(s)	197, 310, 495, 644, 653, 656
PscI	ACATGT	1 cut(s)	590
PspFI	CCCAGC	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	199, 401
PspPI	GGNCC	1 cut(s)	197
PsuI	RGATCY	2 cut(s)	111, 504
RsaI	GTAC	3 cut(s)	595, 679, 770
RsaNI	GTAC	3 cut(s)	594, 678, 769
RseI	CAYNNNNRTG	1 cut(s)	300
SaqAI	TTAA	3 cut(s)	351, 428, 805
SatI	GCNGC	6 cut(s)	196, 309, 494, 643, 652, 655
Sau3AI	GATC	2 cut(s)	111, 504
Sau96I	GGNCC	1 cut(s)	197
ScaI	AGTACT	1 cut(s)	770
SduI	GDGCHC	1 cut(s)	243
SetI	ASST	5 cut(s)	342, 498, 588, 690, 716
SfaNI	GCATC	1 cut(s)	295
SmiMI	CAYNNNNRTG	1 cut(s)	300
Sse9I	AATT	3 cut(s)	5, 433, 624
SsiI	CCGC	1 cut(s)	195
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	2 cut(s)	341, 707
StyI	CCWWGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	269, 682
TaqI	TCGA	1 cut(s)	216
TaqII	GACCGA	1 cut(s)	119
TasI	AATT	3 cut(s)	5, 433, 624
TatI	WGTACW	3 cut(s)	593, 677, 768
TauI	GCSGC	1 cut(s)	198
Tru1I	TTAA	3 cut(s)	351, 428, 805
Tru9I	TTAA	3 cut(s)	351, 428, 805
TscAI	CASTG	3 cut(s)	248, 302, 335
TseFI	GTSAC	2 cut(s)	131, 635
TseI	GCWGC	5 cut(s)	308, 493, 642, 651, 654
Tsp45I	GTSAC	2 cut(s)	131, 635
TspDTI	ATGAA	2 cut(s)	201, 335
TspRI	CASTG	3 cut(s)	248, 302, 335
XbaI	TCTAGA	1 cut(s)	706
XceI	RCATGY	1 cut(s)	594
XspI	CTAG	2 cut(s)	341, 707
ZrmI	AGTACT	1 cut(s)	770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.