Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Reverse (-)

56826030 .. 56830744

Gene Structure 4715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0403900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1728 bp

ATGGGAAAAACGCCGGGAAAATGGATCAAGAATTTGCTTCTTGGGAAGAAATCGTCCAAAGGAAGAGAGAAATCTGCAAATAAAGGGGAGACAGTGGTCTCTTCAAAGTTGTCTGTGCCTGAGTTAACTGTCAGTGCACCTGTGATATCACCACCATTGGTTGGGACGGTTGTTAGTAACGTGGACTCAGAAATCAGAGCAGCTGTTGAAATACCAAACGATAACATTACACTTTCATCAGCAAAGGAAGATGGCCAAACACAAGCTATCTCTAGTTCGGGGTCTCAGGATCTTCAGAGAATTAATCGAGAGGAAGCTGCCACAAAGGCACAGAGTGCTTATAGAGGATATGTGGCTCGCCGTGCGTATCGAACCCTGAAGGGCATCATAAGGCTGCAAGCACTTATTCGTGGTCATTTGGTTAGAAGACAAGCTGTATCCACATTATTATGTGTCCAGGGGATTGTGAAGTTTCAAGCACTGATTCGTGGTCAGCATGTTAGACATTCTGATATTGGGGTTGAAGTGCATAAAACACATCAGGGTGCTACATGTTTCGATTACTCTGGTGTAAGTGCATCTTCCCAGGTGGACAGGCTTTCGAAAAATGCATTTGCTCAGAAGCTTCTAGCATCATTGCCTACTGCTAGTCCTCTACATCTCCAGTATGATCCAGAGGACCCGAACTCAGCCTGGGTGTGGCTTGACCGCTGGACCAGATCATGCTTTTGGGAACCTGTTTTACAACTAAAGAAAAAACCTGATCCGAAGTCTCGTGGCAAATACAAGAAGATTCAAACAGTAGAAACTGAACCGGCTAAGCCAAAAAGAACTGTCCGGAGACTGTCCACTGAAAATGGGCCAAATCGTATCACTTCAGATACTGAAAAGCCTAAACGAAATATGAGGAAAGTTTCAAGTCATCCAATGAACTCAGTTCAGGAACATCAACAAAATGGAGCTGAGAAGGTCAAAAGTAAGGTACGAAAAGTTTCTGGTCCCAAGGAGGTTTCCAATTCCAAAAAGGTTTCTGATCCCAAGGAGGAGGTTTCTGATTCCAAGGAGGAGGTTTCTGACCGGCCAGAGGTTGATAAGGAGATACCAAAGCACAGTACAGAAACAATTTTAGCTCCTGCTGTTCTTGATGATTCAGAGCAGCACACTAGTGAGATTTCTCCAAAGATGCAACATGTGGAAGTTTCTGTCTCCAAACACTCTGATCTAGAAGAATGTATGGAGCTGCCACCAACAGATGAGACATTGCAAAAGTTAGATGACCATCCTTCAGTTGACATGCAATCCATGGAGAAGAATGGCAAAAATGAAGAAGTTCAAGCACTAAATGAGGTTCTAACCTCTGCAGACAACTTTATTAGCAACGAGGACCAGAAAACCAGCCAGAGAAGGGCTTCTTTACCTGTGAAGTTTGATCATCGGGATAATGGGGTTCAAACCACACCAAGAGTGCCAAGTTACATGGCACCAACTGAATCTGCCAGAGCTAGGCTGAAAGGACAGAGCTCCCCCAGGTTTGCACGAGACGTGATTGATAAGAATCTTTTAACCAGACGGCATTCTCTGTCTTCTTCCACCAACACCAAGTTAAGTTTACTTTCTCCACGAGCACAAAAATTGGCTCAAGGCAAGGGAGTGATCAGAACTGACAGATCTTTATCATCTTCAAGGGATGGTTTTGATAAGGGGATCCAACCTGAGTGGAGGAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

575

Amino Acids

63.99

Weight (kDa)

9.66

Isoelectric Point (pI)

46.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4005	PF13178	478 - 539	2.2e-11	Protein of unknown function (DUF4005)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1480
AccB7I	CCANNNNNTGG	1 cut(s)	161
AccIII	TCCGGA	1 cut(s)	837
AciI	CCGC	1 cut(s)	709
AclWI	GGATC	7 cut(s)	32, 297, 665, 758, 1028, 1699, 1712
AcoI	YGGCCR	2 cut(s)	253, 1079
AcsI	RAATTY	1 cut(s)	31
AcuI	CTGAAG	4 cut(s)	278, 398, 861, 1269
AdeI	CACNNNGTG	1 cut(s)	335
AfaI	GTAC	2 cut(s)	984, 1114
AfiI	CCNNNNNNNGG	5 cut(s)	161, 699, 1084, 1405, 1503
AflIII	ACRYGT	2 cut(s)	551, 1189
AgsI	TTSAA	9 cut(s)	105, 209, 476, 524, 797, 918, 1334, 1451, 1683
AhlI	ACTAGT	1 cut(s)	1163
AjiI	CACGTC	1 cut(s)	1543
AjnI	CCWGG	4 cut(s)	456, 585, 692, 1526
AleI	CACNNNNGTG	1 cut(s)	1164
Alw21I	GWGCWC	3 cut(s)	139, 1523, 1627
Alw26I	GTCTC	8 cut(s)	83, 103, 288, 777, 835, 1210, 1250, 1533
Alw44I	GTGCAC	1 cut(s)	135
AlwI	GGATC	7 cut(s)	32, 297, 665, 758, 1028, 1699, 1712
AlwNI	CAGNNNCTG	1 cut(s)	884
Aor13HI	TCCGGA	1 cut(s)	837
AoxI	GGCC	3 cut(s)	253, 860, 1079
ApaLI	GTGCAC	1 cut(s)	135
ApeKI	GCWGC	5 cut(s)	200, 317, 394, 1156, 1240
ApoI	RAATTY	1 cut(s)	31
AseI	ATTAAT	1 cut(s)	303
Asp700I	GAANNNNTTC	3 cut(s)	991, 1329, 1408
AspS9I	GGNCC	5 cut(s)	679, 714, 860, 998, 1384
AsuC2I	CCSGG	1 cut(s)	15
AsuHPI	GGTGA	1 cut(s)	141
AsuII	TTCGAA	1 cut(s)	602
AvaII	GGWCC	4 cut(s)	679, 714, 998, 1384
BaeGI	GKGCMC	1 cut(s)	139
BalI	TGGCCA	1 cut(s)	255
BamHI	GGATCC	1 cut(s)	1704
BanI	GGYRCC	1 cut(s)	1480
BanII	GRGCYC	1 cut(s)	1523
BauI	CACGAG	3 cut(s)	774, 1536, 1620
BbsI	GAAGAC	2 cut(s)	433, 1575
Bbv12I	GWGCWC	3 cut(s)	139, 1523, 1627
BbvI	GCAGC	5 cut(s)	212, 304, 381, 1168, 1227
BccI	CCATC	3 cut(s)	245, 1287, 1682
BceAI	ACGGC	2 cut(s)	345, 1586
BciT130I	CCWGG	4 cut(s)	458, 587, 694, 1528
BciVI	GTATCC	1 cut(s)	448
BclI	TGATCA	2 cut(s)	1429, 1653
BcnI	CCSGG	1 cut(s)	15
BcoDI	GTCTC	8 cut(s)	83, 103, 288, 777, 835, 1210, 1250, 1533
BcuI	ACTAGT	1 cut(s)	1163
BfaI	CTAG	6 cut(s)	273, 629, 648, 1164, 1223, 1503
BfmI	CTRYAG	1 cut(s)	1359
BfuI	GTATCC	1 cut(s)	448
BglI	GCCNNNNNGGC	1 cut(s)	326
BglII	AGATCT	1 cut(s)	1667
BisI	GCNGC	5 cut(s)	201, 318, 395, 1157, 1241
BlpI	GCTNAGC	1 cut(s)	819
BlsI	GCNGC	5 cut(s)	202, 319, 396, 1158, 1242
Bme1390I	CCNGG	5 cut(s)	15, 458, 587, 694, 1528
Bme18I	GGWCC	4 cut(s)	679, 714, 998, 1384
BmgBI	CACGTC	1 cut(s)	1543
BmgT120I	GGNCC	5 cut(s)	679, 714, 860, 998, 1384
BmiI	GGNNCC	5 cut(s)	681, 735, 1000, 1482, 1706
BmrFI	CCNGG	5 cut(s)	15, 458, 587, 694, 1528
BmsI	GCATC	4 cut(s)	393, 587, 641, 1173
BoxI	GACNNNNGTC	1 cut(s)	95
BpiI	GAAGAC	2 cut(s)	433, 1575
BpmI	CTGGAG	1 cut(s)	647
Bpu1102I	GCTNAGC	1 cut(s)	819
Bpu14I	TTCGAA	1 cut(s)	602
BpuEI	CTTGAG	1 cut(s)	1623
BpuMI	CCSGG	1 cut(s)	15
BsaBI	GATNNNNATC	3 cut(s)	1278, 1554, 1672
BsaI	GGTCTC	2 cut(s)	103, 288
BsaJI	CCNNGG	8 cut(s)	457, 585, 693, 1002, 1038, 1059, 1302, 1526
BsaWI	WCCGGW	1 cut(s)	837
Bsc4I	CCNNNNNNNGG	5 cut(s)	161, 699, 1084, 1405, 1503
Bse118I	RCCGGY	2 cut(s)	814, 1077
Bse1I	ACTGG	1 cut(s)	664
Bse3DI	GCAATG	2 cut(s)	635, 1259
Bse8I	GATNNNNATC	3 cut(s)	1278, 1554, 1672
BseAI	TCCGGA	1 cut(s)	837
BseBI	CCWGG	4 cut(s)	458, 587, 694, 1528
BseDI	CCNNGG	8 cut(s)	457, 585, 693, 1002, 1038, 1059, 1302, 1526
BseGI	GGATG	3 cut(s)	922, 1279, 1693
BseJI	GATNNNNATC	3 cut(s)	1278, 1554, 1672
BseLI	CCNNNNNNNGG	5 cut(s)	161, 699, 1084, 1405, 1503
BseMI	GCAATG	2 cut(s)	635, 1259
BseMII	CTCAG	8 cut(s)	111, 201, 299, 632, 702, 948, 954, 1704
BseNI	ACTGG	1 cut(s)	664
BseRI	GAGGAG	2 cut(s)	1058, 1079
BseSI	GKGCMC	1 cut(s)	139
BseXI	GCAGC	5 cut(s)	212, 304, 381, 1168, 1227
BshFI	GGCC	3 cut(s)	255, 862, 1081
BshNI	GGYRCC	1 cut(s)	1480
BsiHKAI	GWGCWC	3 cut(s)	139, 1523, 1627
BsiSI	CCGG	4 cut(s)	14, 815, 838, 1078
BslFI	GGGAC	2 cut(s)	178, 984
BslI	CCNNNNNNNGG	5 cut(s)	161, 699, 1084, 1405, 1503
BsmAI	GTCTC	8 cut(s)	83, 103, 288, 777, 835, 1210, 1250, 1533
BsmBI	CGTCTC	1 cut(s)	1533
BsmFI	GGGAC	2 cut(s)	178, 984
BsmI	GAATGC	1 cut(s)	1573
BsnI	GGCC	3 cut(s)	255, 862, 1081
Bso31I	GGTCTC	2 cut(s)	103, 288
Bsp119I	TTCGAA	1 cut(s)	602
Bsp1286I	GDGCHC	3 cut(s)	139, 1523, 1627
Bsp13I	TCCGGA	1 cut(s)	837
Bsp1720I	GCTNAGC	1 cut(s)	819
Bsp19I	CCATGG	1 cut(s)	1302
BspACI	CCGC	1 cut(s)	709
BspANI	GGCC	3 cut(s)	255, 862, 1081
BspCNI	CTCAG	8 cut(s)	112, 200, 298, 631, 701, 947, 955, 1705
BspEI	TCCGGA	1 cut(s)	837
BspLI	GGNNCC	5 cut(s)	681, 735, 1000, 1482, 1706
BspMAI	CTGCAG	1 cut(s)	1363
BspPI	GGATC	7 cut(s)	32, 297, 665, 758, 1028, 1699, 1712
BspT104I	TTCGAA	1 cut(s)	602
BspT107I	GGYRCC	1 cut(s)	1480
BspTNI	GGTCTC	2 cut(s)	103, 288
BsrDI	GCAATG	2 cut(s)	635, 1259
BsrFI	RCCGGY	2 cut(s)	814, 1077
BsrI	ACTGG	1 cut(s)	664
BssAI	RCCGGY	2 cut(s)	814, 1077
BssECI	CCNNGG	8 cut(s)	457, 585, 693, 1002, 1038, 1059, 1302, 1526
BssSI	CACGAG	3 cut(s)	774, 1536, 1620
BssT1I	CCWWGG	4 cut(s)	1002, 1038, 1059, 1302
Bst2BI	CACGAG	3 cut(s)	774, 1536, 1620
Bst2UI	CCWGG	4 cut(s)	458, 587, 694, 1528
Bst4CI	ACNGT	7 cut(s)	94, 130, 169, 802, 835, 846, 1112
Bst6I	CTCTTC	2 cut(s)	58, 106
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	602
BstC8I	GCNNGC	2 cut(s)	358, 399
BstDEI	CTNAG	9 cut(s)	120, 187, 285, 618, 688, 819, 934, 963, 1713
BstDSI	CCRYGG	1 cut(s)	1302
BstF5I	GGATG	3 cut(s)	922, 1279, 1693
BstMAI	GTCTC	8 cut(s)	83, 103, 288, 777, 835, 1210, 1250, 1533
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 335, 362
BstNI	CCWGG	4 cut(s)	458, 587, 694, 1528
BstNSI	RCATGY	4 cut(s)	500, 555, 1193, 1297
BstPAI	GACNNNNGTC	1 cut(s)	95
BstSCI	CCNGG	5 cut(s)	13, 456, 585, 692, 1526
BstSFI	CTRYAG	1 cut(s)	1359
BstSLI	GKGCMC	1 cut(s)	139
BstV1I	GCAGC	5 cut(s)	212, 304, 381, 1168, 1227
BstV2I	GAAGAC	2 cut(s)	433, 1575
BstX2I	RGATCY	3 cut(s)	289, 1667, 1704
BstYI	RGATCY	3 cut(s)	289, 1667, 1704
BsuI	GTATCC	1 cut(s)	448
BsuRI	GGCC	3 cut(s)	255, 862, 1081
BtgI	CCRYGG	1 cut(s)	1302
BtrI	CACGTC	1 cut(s)	1543
BtsCI	GGATG	3 cut(s)	922, 1279, 1693
BtsIMutI	CAGTG	4 cut(s)	99, 139, 479, 849
Cac8I	GCNNGC	2 cut(s)	358, 399
CaiI	CAGNNNCTG	1 cut(s)	884
Cfr10I	RCCGGY	2 cut(s)	814, 1077
Cfr13I	GGNCC	5 cut(s)	679, 714, 860, 998, 1384
Csp6I	GTAC	2 cut(s)	983, 1113
CspCI	CAANNNNNGTGG	1 cut(s)	1697
CviAII	CATG	7 cut(s)	497, 552, 723, 1190, 1294, 1303, 1477
CviQI	GTAC	2 cut(s)	983, 1113
DdeI	CTNAG	9 cut(s)	120, 187, 285, 618, 688, 819, 934, 963, 1713
DraIII	CACNNNGTG	1 cut(s)	335
EaeI	YGGCCR	2 cut(s)	253, 1079
Eam1104I	CTCTTC	2 cut(s)	58, 106
EarI	CTCTTC	2 cut(s)	58, 106
Ecl136II	GAGCTC	1 cut(s)	1521
Eco130I	CCWWGG	4 cut(s)	1002, 1038, 1059, 1302
Eco24I	GRGCYC	1 cut(s)	1523
Eco31I	GGTCTC	2 cut(s)	103, 288
Eco32I	GATATC	1 cut(s)	147
Eco47I	GGWCC	4 cut(s)	679, 714, 998, 1384
Eco53kI	GAGCTC	1 cut(s)	1521
Eco57I	CTGAAG	4 cut(s)	278, 398, 861, 1269
EcoICRI	GAGCTC	1 cut(s)	1521
EcoO109I	RGGNCCY	1 cut(s)	679
EcoRII	CCWGG	4 cut(s)	456, 585, 692, 1526
EcoRV	GATATC	1 cut(s)	147
EcoT14I	CCWWGG	4 cut(s)	1002, 1038, 1059, 1302
EcoT22I	ATGCAT	1 cut(s)	613
EcoT38I	GRGCYC	1 cut(s)	1523
ErhI	CCWWGG	4 cut(s)	1002, 1038, 1059, 1302
Esp3I	CGTCTC	1 cut(s)	1533
FaeI	CATG	7 cut(s)	500, 555, 726, 1193, 1297, 1306, 1480
FalI	AAGNNNNNCTT	4 cut(s)	565, 597, 1396, 1428
FaqI	GGGAC	2 cut(s)	178, 984
FatI	CATG	7 cut(s)	496, 551, 722, 1189, 1293, 1302, 1476
FbaI	TGATCA	2 cut(s)	1429, 1653
Fnu4HI	GCNGC	5 cut(s)	201, 318, 395, 1157, 1241
FokI	GGATG	3 cut(s)	909, 1266, 1700
FriOI	GRGCYC	1 cut(s)	1523
Fsp4HI	GCNGC	5 cut(s)	201, 318, 395, 1157, 1241
FspBI	CTAG	6 cut(s)	273, 629, 648, 1164, 1223, 1503
GluI	GCNGC	5 cut(s)	201, 318, 395, 1157, 1241
GsuI	CTGGAG	1 cut(s)	647
HaeIII	GGCC	3 cut(s)	255, 862, 1081
HapII	CCGG	4 cut(s)	14, 815, 838, 1078
Hin1II	CATG	7 cut(s)	500, 555, 726, 1193, 1297, 1306, 1480
HincII	GTYRAC	2 cut(s)	126, 1291
HindII	GTYRAC	2 cut(s)	126, 1291
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	7 cut(s)	185, 484, 793, 1055, 1148, 1490, 1555
HpaI	GTTAAC	1 cut(s)	126
HpaII	CCGG	4 cut(s)	14, 815, 838, 1078
HphI	GGTGA	1 cut(s)	141
Hpy166II	GTNNAC	7 cut(s)	126, 137, 184, 592, 849, 1291, 1610
Hpy188III	TCNNGA	9 cut(s)	28, 287, 308, 674, 838, 941, 1142, 1223, 1436
Hpy8I	GTNNAC	7 cut(s)	126, 137, 184, 592, 849, 1291, 1610
HpyAV	CCTTC	4 cut(s)	373, 961, 1293, 1398
HpyCH4III	ACNGT	7 cut(s)	94, 130, 169, 802, 835, 846, 1112
HpyCH4IV	ACGT	2 cut(s)	180, 1542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 335, 362
HpyF3I	CTNAG	9 cut(s)	120, 187, 285, 618, 688, 819, 934, 963, 1713
HpySE526I	ACGT	2 cut(s)	180, 1542
Hsp92II	CATG	7 cut(s)	500, 555, 726, 1193, 1297, 1306, 1480
Kpn2I	TCCGGA	1 cut(s)	837
Ksp22I	TGATCA	2 cut(s)	1429, 1653
KspAI	GTTAAC	1 cut(s)	126
LmnI	GCTCC	4 cut(s)	959, 1135, 1237, 1526
Lsp1109I	GCAGC	5 cut(s)	212, 304, 381, 1168, 1227
LweI	GCATC	4 cut(s)	393, 587, 641, 1173
MaeI	CTAG	6 cut(s)	273, 629, 648, 1164, 1223, 1503
MaeII	ACGT	2 cut(s)	180, 1542
MaeIII	GTNAC	2 cut(s)	176, 1472
MflI	RGATCY	3 cut(s)	289, 1667, 1704
MhlI	GDGCHC	3 cut(s)	139, 1523, 1627
MlsI	TGGCCA	1 cut(s)	255
MluCI	AATT	5 cut(s)	31, 300, 1015, 1122, 1631
MluNI	TGGCCA	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	179
Mox20I	TGGCCA	1 cut(s)	255
Mph1103I	ATGCAT	1 cut(s)	613
MroI	TCCGGA	1 cut(s)	837
MroXI	GAANNNNTTC	3 cut(s)	991, 1329, 1408
MscI	TGGCCA	1 cut(s)	255
MseI	TTAA	4 cut(s)	125, 303, 1562, 1604
MslI	CAYNNNNRTG	3 cut(s)	448, 543, 1164
Msp20I	TGGCCA	1 cut(s)	255
MspA1I	CMGCKG	2 cut(s)	203, 711
MspI	CCGG	4 cut(s)	14, 815, 838, 1078
MspR9I	CCNGG	5 cut(s)	15, 458, 587, 694, 1528
Mva1269I	GAATGC	1 cut(s)	1573
MvaI	CCWGG	4 cut(s)	458, 587, 694, 1528
MwoI	GCNNNNNNNGC	3 cut(s)	326, 335, 362
NciI	CCSGG	1 cut(s)	15
NcoI	CCATGG	1 cut(s)	1302
NlaIII	CATG	7 cut(s)	500, 555, 726, 1193, 1297, 1306, 1480
NlaIV	GGNNCC	5 cut(s)	681, 735, 1000, 1482, 1706
NsiI	ATGCAT	1 cut(s)	613
NspI	RCATGY	4 cut(s)	500, 555, 1193, 1297
NspV	TTCGAA	1 cut(s)	602
OliI	CACNNNNGTG	1 cut(s)	1164
PciI	ACATGT	2 cut(s)	551, 1189
PctI	GAATGC	1 cut(s)	1573
PdmI	GAANNNNTTC	3 cut(s)	991, 1329, 1408
PfeI	GAWTC	6 cut(s)	484, 793, 1055, 1148, 1490, 1555
PflMI	CCANNNNNTGG	1 cut(s)	161
PkrI	GCNGC	5 cut(s)	202, 319, 396, 1158, 1242
PleI	GAGTC	1 cut(s)	179
PpsI	GAGTC	1 cut(s)	179
PpuMI	RGGWCCY	1 cut(s)	679
PscI	ACATGT	2 cut(s)	551, 1189
PshAI	GACNNNNGTC	1 cut(s)	95
PshBI	ATTAAT	1 cut(s)	303
Psp124BI	GAGCTC	1 cut(s)	1523
Psp5II	RGGWCCY	1 cut(s)	679
Psp6I	CCWGG	4 cut(s)	456, 585, 692, 1526
PspGI	CCWGG	4 cut(s)	456, 585, 692, 1526
PspN4I	GGNNCC	5 cut(s)	681, 735, 1000, 1482, 1706
PspPI	GGNCC	5 cut(s)	679, 714, 860, 998, 1384
PspPPI	RGGWCCY	1 cut(s)	679
PsrI	GAACNNNNNNTAC	2 cut(s)	726, 758
PstI	CTGCAG	1 cut(s)	1363
PstNI	CAGNNNCTG	1 cut(s)	884
PsuI	RGATCY	3 cut(s)	289, 1667, 1704
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	2 cut(s)	984, 1114
RsaNI	GTAC	2 cut(s)	983, 1113
RseI	CAYNNNNRTG	3 cut(s)	448, 543, 1164
SacI	GAGCTC	1 cut(s)	1523
SaqAI	TTAA	4 cut(s)	125, 303, 1562, 1604
SatI	GCNGC	5 cut(s)	201, 318, 395, 1157, 1241
Sau96I	GGNCC	5 cut(s)	679, 714, 860, 998, 1384
SchI	GAGTC	1 cut(s)	179
ScrFI	CCNGG	5 cut(s)	15, 458, 587, 694, 1528
SduI	GDGCHC	3 cut(s)	139, 1523, 1627
SfaNI	GCATC	4 cut(s)	393, 587, 641, 1173
SfcI	CTRYAG	1 cut(s)	1359
SfuI	TTCGAA	1 cut(s)	602
SinI	GGWCC	4 cut(s)	679, 714, 998, 1384
SmiMI	CAYNNNNRTG	3 cut(s)	448, 543, 1164
SmlI	CTYRAG	1 cut(s)	1638
SmoI	CTYRAG	1 cut(s)	1638
SpeI	ACTAGT	1 cut(s)	1163
Sse9I	AATT	5 cut(s)	31, 300, 1015, 1122, 1631
SsiI	CCGC	1 cut(s)	709
SspMI	CTAG	6 cut(s)	273, 629, 648, 1164, 1223, 1503
SstI	GAGCTC	1 cut(s)	1523
StyD4I	CCNGG	5 cut(s)	13, 456, 585, 692, 1526
StyI	CCWWGG	4 cut(s)	1002, 1038, 1059, 1302
TaaI	ACNGT	7 cut(s)	94, 130, 169, 802, 835, 846, 1112
TaiI	ACGT	2 cut(s)	183, 1545
TaqI	TCGA	4 cut(s)	307, 370, 558, 602
TasI	AATT	5 cut(s)	31, 300, 1015, 1122, 1631
TatI	WGTACW	1 cut(s)	1112
TfiI	GAWTC	6 cut(s)	484, 793, 1055, 1148, 1490, 1555
Tru1I	TTAA	4 cut(s)	125, 303, 1562, 1604
Tru9I	TTAA	4 cut(s)	125, 303, 1562, 1604
TscAI	CASTG	4 cut(s)	99, 139, 486, 856
TseI	GCWGC	5 cut(s)	200, 317, 394, 1156, 1240
TspDTI	ATGAA	3 cut(s)	225, 944, 1338
TspRI	CASTG	4 cut(s)	99, 139, 486, 856
Van91I	CCANNNNNTGG	1 cut(s)	161
VneI	GTGCAC	1 cut(s)	135
VpaK11BI	GGWCC	4 cut(s)	679, 714, 998, 1384
VspI	ATTAAT	1 cut(s)	303
XapI	RAATTY	1 cut(s)	31
XbaI	TCTAGA	1 cut(s)	1222
XceI	RCATGY	4 cut(s)	500, 555, 1193, 1297
XmnI	GAANNNNTTC	3 cut(s)	991, 1329, 1408
XspI	CTAG	6 cut(s)	273, 629, 648, 1164, 1223, 1503
Zsp2I	ATGCAT	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.