Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004279.1

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Forward (+)

92820 .. 93610

Gene Structure 791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004279.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atgcagcttcatatcagagttctccagattgcaaagaatgagaccgatcccaatattacaactgtgggatatctggatgacaacgtttctgatgatcatttgagaacagtttttagccagtatggtgagctagttcatgttaagataccagcaggcaagcgatgtgggtttgttcagttcgcagacaggagccgtgctgaagaggctttgcaaggattaaacaattctcagattggtggacaaaatatccgactttcttggggtcgcagtccttcaaacaagcagcaggctcaggcagatccaaaccaatggaatgctggctattatggatatgcaccaacccccgagggatatggatatgcccaagtatcccaagaccctaacatgtactatggagggtatcctgctggatatggcaattaccagcagtcacagcagcaacagcagcagcaagtgggttatagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

155

Amino Acids

17.36

Weight (kDa)

5.84

Isoelectric Point (pI)

59.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	84
AclWI	GGATC	2 cut(s)	41, 293
AcuI	CTGAAG	1 cut(s)	219
AfaI	GTAC	1 cut(s)	389
AflIII	ACRYGT	1 cut(s)	384
AgsI	TTSAA	1 cut(s)	276
AluBI	AGCT	2 cut(s)	7, 130
AluI	AGCT	2 cut(s)	7, 130
Alw26I	GTCTC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	41, 293
Ama87I	CYCGRG	1 cut(s)	344
ApeKI	GCWGC	5 cut(s)	4, 283, 436, 445, 448
AsuHPI	GGTGA	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	344
BbvI	GCAGC	5 cut(s)	16, 295, 448, 457, 460
BceAI	ACGGC	1 cut(s)	177
BciVI	GTATCC	2 cut(s)	379, 411
BclI	TGATCA	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	35
BfaI	CTAG	1 cut(s)	131
BfuI	GTATCC	2 cut(s)	379, 411
BisI	GCNGC	5 cut(s)	5, 284, 437, 446, 449
BlsI	GCNGC	5 cut(s)	6, 285, 438, 447, 450
BmeT110I	CYCGRG	1 cut(s)	344
BmiI	GGNNCC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	8
Bpu10I	CCTNAGC	1 cut(s)	291
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	345
Bse1I	ACTGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	345
BseGI	GGATG	1 cut(s)	82
BseMII	CTCAG	2 cut(s)	242, 305
BseNI	ACTGG	1 cut(s)	118
BseXI	GCAGC	5 cut(s)	16, 295, 448, 457, 460
BsiHKCI	CYCGRG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	319
Bso31I	GGTCTC	1 cut(s)	35
BsoBI	CYCGRG	1 cut(s)	344
Bsp143I	GATC	3 cut(s)	46, 94, 298
BspCNI	CTCAG	2 cut(s)	241, 304
BspLI	GGNNCC	1 cut(s)	191
BspPI	GGATC	2 cut(s)	41, 293
BspTNI	GGTCTC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	345
BssMI	GATC	3 cut(s)	46, 94, 298
Bst4CI	ACNGT	2 cut(s)	64, 109
Bst6I	CTCTTC	1 cut(s)	195
BstC8I	GCNNGC	4 cut(s)	154, 158, 288, 319
BstDEI	CTNAG	2 cut(s)	228, 291
BstF5I	GGATG	1 cut(s)	82
BstKTI	GATC	3 cut(s)	49, 97, 301
BstMAI	GTCTC	1 cut(s)	35
BstMBI	GATC	3 cut(s)	46, 94, 298
BstMWI	GCNNNNNNNGC	4 cut(s)	203, 433, 442, 445
BstNSI	RCATGY	1 cut(s)	388
BstV1I	GCAGC	5 cut(s)	16, 295, 448, 457, 460
BstX2I	RGATCY	1 cut(s)	298
BstXI	CCANNNNNNTGG	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	298
BsuI	GTATCC	2 cut(s)	379, 411
BtgZI	GCGATG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	82
Cac8I	GCNNGC	4 cut(s)	154, 158, 288, 319
Csp6I	GTAC	1 cut(s)	388
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	2 cut(s)	137, 385
CviJI	RGCY	7 cut(s)	7, 117, 130, 192, 206, 290, 321
CviKI_1	RGCY	7 cut(s)	7, 117, 130, 192, 206, 290, 321
CviQI	GTAC	1 cut(s)	388
DdeI	CTNAG	2 cut(s)	228, 291
DpnI	GATC	3 cut(s)	48, 96, 300
DpnII	GATC	3 cut(s)	46, 94, 298
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	35
Eco32I	GATATC	1 cut(s)	71
Eco57I	CTGAAG	1 cut(s)	219
Eco88I	CYCGRG	1 cut(s)	344
EcoRV	GATATC	1 cut(s)	71
FaeI	CATG	2 cut(s)	140, 388
FatI	CATG	2 cut(s)	136, 384
FbaI	TGATCA	1 cut(s)	94
Fnu4HI	GCNGC	5 cut(s)	5, 284, 437, 446, 449
FokI	GGATG	1 cut(s)	89
Fsp4HI	GCNGC	5 cut(s)	5, 284, 437, 446, 449
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	5 cut(s)	5, 284, 437, 446, 449
GsuI	CTGGAG	1 cut(s)	8
Hin1II	CATG	2 cut(s)	140, 388
HphI	GGTGA	1 cut(s)	137
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	4 cut(s)	17, 91, 231, 251
Hpy188III	TCNNGA	2 cut(s)	25, 74
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	282
HpyCH4III	ACNGT	2 cut(s)	64, 109
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	4, 32, 211, 335
HpyF10VI	GCNNNNNNNGC	4 cut(s)	203, 433, 442, 445
HpyF3I	CTNAG	2 cut(s)	228, 291
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	140, 388
Ksp22I	TGATCA	1 cut(s)	94
Kzo9I	GATC	3 cut(s)	46, 94, 298
LmnI	GCTCC	1 cut(s)	189
Lsp1109I	GCAGC	5 cut(s)	16, 295, 448, 457, 460
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	429
MalI	GATC	3 cut(s)	48, 96, 300
MboI	GATC	3 cut(s)	46, 94, 298
MboII	GAAGA	1 cut(s)	212
MflI	RGATCY	1 cut(s)	298
MluCI	AATT	2 cut(s)	223, 418
MmeI	TCCRAC	1 cut(s)	274
MnlI	CCTC	3 cut(s)	196, 340, 389
MseI	TTAA	2 cut(s)	141, 218
Mva1269I	GAATGC	1 cut(s)	319
MwoI	GCNNNNNNNGC	4 cut(s)	203, 433, 442, 445
NdeII	GATC	3 cut(s)	46, 94, 298
NlaIII	CATG	2 cut(s)	140, 388
NlaIV	GGNNCC	1 cut(s)	191
NmuCI	GTSAC	1 cut(s)	429
NspI	RCATGY	1 cut(s)	388
PciI	ACATGT	1 cut(s)	384
PctI	GAATGC	1 cut(s)	319
PkrI	GCNGC	5 cut(s)	6, 285, 438, 447, 450
PscI	ACATGT	1 cut(s)	384
Psp1406I	AACGTT	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	298
RsaI	GTAC	1 cut(s)	389
RsaNI	GTAC	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	141, 218
SatI	GCNGC	5 cut(s)	5, 284, 437, 446, 449
Sau3AI	GATC	3 cut(s)	46, 94, 298
SetI	ASST	3 cut(s)	9, 87, 132
Sse9I	AATT	2 cut(s)	223, 418
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	1 cut(s)	131
TaaI	ACNGT	2 cut(s)	64, 109
TaiI	ACGT	1 cut(s)	87
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	2 cut(s)	223, 418
TatI	WGTACW	1 cut(s)	387
Tru1I	TTAA	2 cut(s)	141, 218
Tru9I	TTAA	2 cut(s)	141, 218
TseFI	GTSAC	1 cut(s)	429
TseI	GCWGC	5 cut(s)	4, 283, 436, 445, 448
Tsp45I	GTSAC	1 cut(s)	429
TspDTI	ATGAA	1 cut(s)	125
XceI	RCATGY	1 cut(s)	388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	314
XspI	CTAG	1 cut(s)	131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.