MD10G1319600.v1.1

Polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
40175174 .. 40179026
3853 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1319600.v1.1.491

Sequence Viewer

Length: 1224 bp
ATGATGATGCAACCGGGTGCAGGCGGTGTGGCTCCGTCGGCATTGGGCCAGCAGCCCGCCCAGCAGTATGGTCAGCAACCCGCGCAGCCCTACATGATGATGCCACCGCCGACTGCCCAGGCACCTGCCATGTGGGCCCCGCAGTCGCATGTGGCGCCTCCGGCTCCTCAGCTCCCCCAGCCCGCCTCCGCCGACGAGGTCCGCACGCTTTGGATCGGCGACCTGCAGTACTGGATGGAGGAGAACTATCTCTACAATATTTTTCTTCACACCGGCGAGGTTGTTTCTGTGAAAGTCATCCGCAATAAGCAAACTTGTCAATCAGAGGGTTACGGGTTCATTGAATTCAATAGCCGTGCTGCTGCGGAAAGAGTGCTTCAGGCATTCAATGGTACTCCAATGCCAAATGGTGCCCAGAATTTTAGATTGAACTGGGCATCTACCGGCGAGAAACGTTCTGATGATACCCCGGATTATACGATATTTGTTGGAGATTTGGCTGCTGATGTGACGGATTATGTGCTACAAGAGACATTCAGGGCCCGTTATCCATCATGTAAGAGTGCCAAGGTCGTCATTGATAGGCTCACAGGGCGCACCAAGGGGTACGGGTTCGTTAAGTTTGGAGATGAGTCTGAACAGATGCGTGCCATGACTGAGATGAATGGAGTTCTATGTTCTACAAGGCCTATGCGAATTGGACCAGCAGCAAACAAAAACGCCGGGGGCAGTCAGCAATATTCAAATGCTTCATATCAAAATTCTCAGGGTGCAAAGAATGATAGTGATCCGAACAATACAACTATATTTGTAGGTAATCTGGATGGTAATGTTACTGATGACCATTTGAGACAAGTTTTCAGCAAGTACGGTGAGCTAGTACATGTCAAGATACCAATGGGCAAGCGATGTGGGTTTGTTCAGTTTGCAGACAGAAGCTGTGCCGAAGAAGCATTGCGTGTGCTAAATGGATCTCAGCTGGGTGCACAAAATATCCGTCTTTCATGGGGGCGCAGTCCTTCAAACAAGCAGCCTCAGGCAGATCCAAGCCAATGGAATGGTGGAGGCGGCTACTATGGATATGCACCTACCCCCGATAGCTATGGGTACGCACAAGTTTCCCAAGACCCTAACTTGTACTATGGAAGCTATCCTGCTGCCGGGTACGGTAATTACCAGCAGCCACAGCAGCAGCAGCAGCAGCAGCAAATCGGGTACAGCTGA

Protein Analysis

408

Amino Acids

44.78

Weight (kDa)

6.13

Isoelectric Point (pI)

51.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 70 - 134 2.7e-12 RNA recognition motif
RRM_1 PF00076 161 - 224 2.2e-12 RNA recognition motif
RRM_1 PF00076 269 - 332 7.2e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 133
Acc36I ACCTGC 2 cut(s) 133, 231
AccB1I GGYRCC 3 cut(s) 121, 154, 410
AccII CGCG 1 cut(s) 83
AclI AACGTT 1 cut(s) 454
AclWI GGATC 4 cut(s) 221, 782, 979, 1037
AcsI RAATTY 3 cut(s) 344, 418, 760
AcuI CTGAAG 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 155
AfaI GTAC 9 cut(s) 230, 394, 608, 869, 882, 1109, 1139, 1166, 1217
AfiI CCNNNNNNNGG 2 cut(s) 20, 1160
AflIII ACRYGT 1 cut(s) 883
AgsI TTSAA 6 cut(s) 344, 349, 388, 430, 744, 1023
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 7 cut(s) 172, 877, 939, 979, 1101, 1149, 1221
AluI AGCT 7 cut(s) 172, 877, 939, 979, 1101, 1149, 1221
Alw21I GWGCWC 1 cut(s) 988
Alw26I GTCTC 2 cut(s) 524, 844
Alw44I GTGCAC 1 cut(s) 984
AlwI GGATC 4 cut(s) 221, 782, 979, 1037
AlwNI CAGNNNCTG 1 cut(s) 939
AoxI GGCC 4 cut(s) 46, 135, 540, 686
ApaI GGGCCC 2 cut(s) 139, 544
ApaLI GTGCAC 1 cut(s) 984
ApoI RAATTY 3 cut(s) 344, 418, 760
ArsI GACNNNNNNTTYG 2 cut(s) 982, 1014
AspLEI GCGC 4 cut(s) 85, 157, 597, 1014
AspS9I GGNCC 7 cut(s) 46, 135, 136, 199, 540, 541, 701
AsuC2I CCSGG 4 cut(s) 15, 470, 724, 1162
AsuHPI GGTGA 1 cut(s) 884
AvaII GGWCC 2 cut(s) 199, 701
AxyI CCTNAGG 1 cut(s) 1035
BaeGI GKGCMC 4 cut(s) 139, 415, 544, 988
BanI GGYRCC 3 cut(s) 121, 154, 410
BanII GRGCYC 2 cut(s) 139, 544
Bbv12I GWGCWC 1 cut(s) 988
BbvCI CCTCAGC 1 cut(s) 168
BccI CCATC 3 cut(s) 229, 559, 818
BceAI ACGGC 1 cut(s) 339
BciT130I CCWGG 1 cut(s) 119
BcnI CCSGG 4 cut(s) 15, 470, 724, 1162
BcoDI GTCTC 2 cut(s) 524, 844
BfaI CTAG 1 cut(s) 878
BfmI CTRYAG 1 cut(s) 224
BfoI RGCGCY 1 cut(s) 158
BfuAI ACCTGC 2 cut(s) 133, 231
BglI GCCNNNNNGGC 1 cut(s) 134
BmcAI AGTACT 1 cut(s) 230
Bme1390I CCNGG 5 cut(s) 15, 119, 470, 724, 1162
Bme18I GGWCC 2 cut(s) 199, 701
BmgT120I GGNCC 7 cut(s) 46, 135, 136, 199, 540, 541, 701
BmiI GGNNCC 8 cut(s) 33, 123, 137, 138, 156, 165, 412, 542
BmrFI CCNGG 5 cut(s) 15, 119, 470, 724, 1162
BmrI ACTGGG 1 cut(s) 442
BmsI GCATC 3 cut(s) 90, 446, 633
BmuI ACTGGG 1 cut(s) 442
Bpu10I CCTNAGC 1 cut(s) 168
BpuMI CCSGG 4 cut(s) 15, 470, 724, 1162
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 1 cut(s) 155
BsaJI CCNNGG 5 cut(s) 117, 468, 567, 600, 723
Bsc4I CCNNNNNNNGG 2 cut(s) 20, 1160
Bse118I RCCGGY 2 cut(s) 272, 443
Bse1I ACTGG 2 cut(s) 236, 437
Bse21I CCTNAGG 1 cut(s) 1035
Bse3DI GCAATG 1 cut(s) 953
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 5 cut(s) 117, 468, 567, 600, 723
BseGI GGATG 3 cut(s) 240, 297, 829
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 2 cut(s) 20, 1160
BseMI GCAATG 1 cut(s) 953
BseMII CTCAG 5 cut(s) 182, 648, 779, 989, 1049
BseNI ACTGG 2 cut(s) 236, 437
BseRI GAGGAG 2 cut(s) 156, 254
BseSI GKGCMC 4 cut(s) 139, 415, 544, 988
BseYI CCCAGC 3 cut(s) 60, 177, 979
BsgI GTGCAG 1 cut(s) 39
Bsh1236I CGCG 1 cut(s) 83
BshFI GGCC 4 cut(s) 48, 137, 542, 688
BshNI GGYRCC 3 cut(s) 121, 154, 410
BsiHKAI GWGCWC 1 cut(s) 988
BsiSI CCGG 7 cut(s) 14, 161, 273, 444, 470, 723, 1161
BslI CCNNNNNNNGG 2 cut(s) 20, 1160
BsmAI GTCTC 2 cut(s) 524, 844
BsmI GAATGC 1 cut(s) 383
BsnI GGCC 4 cut(s) 48, 137, 542, 688
Bsp120I GGGCCC 2 cut(s) 135, 540
Bsp1286I GDGCHC 4 cut(s) 139, 415, 544, 988
Bsp143I GATC 4 cut(s) 213, 787, 971, 1042
BspANI GGCC 4 cut(s) 48, 137, 542, 688
BspCNI CTCAG 5 cut(s) 181, 649, 778, 988, 1048
BspFNI CGCG 1 cut(s) 83
BspLI GGNNCC 8 cut(s) 33, 123, 137, 138, 156, 165, 412, 542
BspMAI CTGCAG 1 cut(s) 228
BspMI ACCTGC 2 cut(s) 133, 231
BspPI GGATC 4 cut(s) 221, 782, 979, 1037
BspT107I GGYRCC 3 cut(s) 121, 154, 410
BsrDI GCAATG 1 cut(s) 953
BsrFI RCCGGY 2 cut(s) 272, 443
BsrI ACTGG 2 cut(s) 236, 437
BssAI RCCGGY 2 cut(s) 272, 443
BssECI CCNNGG 5 cut(s) 117, 468, 567, 600, 723
BssMI GATC 4 cut(s) 213, 787, 971, 1042
BssNI GRCGYC 1 cut(s) 155
BssT1I CCWWGG 2 cut(s) 567, 600
Bst2UI CCWGG 1 cut(s) 119
Bst4CI ACNGT 2 cut(s) 872, 1169
BstACI GRCGYC 1 cut(s) 155
BstC8I GCNNGC 7 cut(s) 22, 50, 57, 183, 206, 648, 905
BstDEI CTNAG 5 cut(s) 168, 657, 765, 975, 1035
BstF5I GGATG 3 cut(s) 240, 297, 829
BstFNI CGCG 1 cut(s) 83
BstH2I RGCGCY 1 cut(s) 158
BstHHI GCGC 4 cut(s) 85, 157, 597, 1014
BstKTI GATC 4 cut(s) 216, 790, 974, 1045
BstMAI GTCTC 2 cut(s) 524, 844
BstMBI GATC 4 cut(s) 213, 787, 971, 1042
BstNI CCWGG 1 cut(s) 119
BstNSI RCATGY 2 cut(s) 152, 887
BstSCI CCNGG 5 cut(s) 13, 117, 468, 722, 1160
BstSFI CTRYAG 1 cut(s) 224
BstSLI GKGCMC 4 cut(s) 139, 415, 544, 988
BstUI CGCG 1 cut(s) 83
BstX2I RGATCY 2 cut(s) 971, 1042
BstXI CCANNNNNNTGG 3 cut(s) 68, 1053, 1058
BstYI RGATCY 2 cut(s) 971, 1042
Bsu36I CCTNAGG 1 cut(s) 1035
BsuRI GGCC 4 cut(s) 48, 137, 542, 688
BtgZI GCGATG 1 cut(s) 922
BtsCI GGATG 3 cut(s) 240, 297, 829
BveI ACCTGC 2 cut(s) 133, 231
Cac8I GCNNGC 7 cut(s) 22, 50, 57, 183, 206, 648, 905
CaiI CAGNNNCTG 1 cut(s) 939
CfoI GCGC 4 cut(s) 85, 157, 597, 1014
Cfr10I RCCGGY 2 cut(s) 272, 443
Cfr13I GGNCC 7 cut(s) 46, 135, 136, 199, 540, 541, 701
Csp6I GTAC 9 cut(s) 229, 393, 607, 868, 881, 1108, 1138, 1165, 1216
CspCI CAANNNNNGTGG 2 cut(s) 892, 927
CviAII CATG 7 cut(s) 94, 130, 149, 555, 652, 884, 1005
CviQI GTAC 9 cut(s) 229, 393, 607, 868, 881, 1108, 1138, 1165, 1216
DdeI CTNAG 5 cut(s) 168, 657, 765, 975, 1035
DinI GGCGCC 1 cut(s) 156
DpnI GATC 4 cut(s) 215, 789, 973, 1044
DpnII GATC 4 cut(s) 213, 787, 971, 1042
EciI GGCGGA 1 cut(s) 178
Eco130I CCWWGG 2 cut(s) 567, 600
Eco147I AGGCCT 1 cut(s) 688
Eco24I GRGCYC 2 cut(s) 139, 544
Eco47I GGWCC 2 cut(s) 199, 701
Eco57I CTGAAG 1 cut(s) 362
Eco81I CCTNAGG 1 cut(s) 1035
EcoO109I RGGNCCY 2 cut(s) 136, 540
EcoRI GAATTC 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 2 cut(s) 567, 600
EcoT38I GRGCYC 2 cut(s) 139, 544
EgeI GGCGCC 1 cut(s) 156
EheI GGCGCC 1 cut(s) 156
ErhI CCWWGG 2 cut(s) 567, 600
FaeI CATG 7 cut(s) 97, 133, 152, 558, 655, 887, 1008
FatI CATG 7 cut(s) 93, 129, 148, 554, 651, 883, 1004
FauI CCCGC 4 cut(s) 64, 88, 147, 190
FokI GGATG 3 cut(s) 247, 284, 836
FriOI GRGCYC 2 cut(s) 139, 544
FspBI CTAG 1 cut(s) 878
GlaI GCGC 4 cut(s) 84, 156, 596, 1013
GsaI CCCAGC 3 cut(s) 64, 181, 983
HaeII RGCGCY 1 cut(s) 158
HaeIII GGCC 4 cut(s) 48, 137, 542, 688
HapII CCGG 7 cut(s) 14, 161, 273, 444, 470, 723, 1161
HhaI GCGC 4 cut(s) 85, 157, 597, 1014
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 7 cut(s) 97, 133, 152, 558, 655, 887, 1008
Hin6I GCGC 4 cut(s) 83, 155, 595, 1012
HinP1I GCGC 4 cut(s) 83, 155, 595, 1012
HinfI GANTC 1 cut(s) 632
HpaII CCGG 7 cut(s) 14, 161, 273, 444, 470, 723, 1161
HphI GGTGA 1 cut(s) 884
Hpy166II GTNNAC 1 cut(s) 986
Hpy188I TCNGA 4 cut(s) 325, 460, 637, 792
Hpy188III TCNNGA 2 cut(s) 821, 889
Hpy8I GTNNAC 1 cut(s) 986
Hpy99I CGWCG 2 cut(s) 40, 197
HpyAV CCTTC 1 cut(s) 1029
HpyCH4III ACNGT 2 cut(s) 872, 1169
HpyCH4IV ACGT 1 cut(s) 454
HpyCH4V TGCA 7 cut(s) 10, 20, 226, 773, 929, 986, 1085
HpyF3I CTNAG 5 cut(s) 168, 657, 765, 975, 1035
HpySE526I ACGT 1 cut(s) 454
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 7 cut(s) 97, 133, 152, 558, 655, 887, 1008
HspAI GCGC 4 cut(s) 83, 155, 595, 1012
KasI GGCGCC 1 cut(s) 154
Kzo9I GATC 4 cut(s) 213, 787, 971, 1042
LmnI GCTCC 3 cut(s) 37, 169, 177
LweI GCATC 3 cut(s) 90, 446, 633
MaeI CTAG 1 cut(s) 878
MaeII ACGT 1 cut(s) 454
MaeIII GTNAC 3 cut(s) 329, 508, 832
MalI GATC 4 cut(s) 215, 789, 973, 1044
MboI GATC 4 cut(s) 213, 787, 971, 1042
MboII GAAGA 2 cut(s) 257, 959
MflI RGATCY 2 cut(s) 971, 1042
MhlI GDGCHC 4 cut(s) 139, 415, 544, 988
MluCI AATT 5 cut(s) 344, 418, 696, 760, 1171
Mly113I GGCGCC 1 cut(s) 155
MlyI GAGTC 1 cut(s) 641
MmeI TCCRAC 1 cut(s) 469
MnlI CCTC 9 cut(s) 168, 177, 190, 196, 232, 271, 319, 1044, 1058
MseI TTAA 1 cut(s) 618
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 2 cut(s) 979, 1221
MspI CCGG 7 cut(s) 14, 161, 273, 444, 470, 723, 1161
MspR9I CCNGG 5 cut(s) 15, 119, 470, 724, 1162
Mva1269I GAATGC 1 cut(s) 383
MvaI CCWGG 1 cut(s) 119
MvnI CGCG 1 cut(s) 83
NarI GGCGCC 1 cut(s) 155
NciI CCSGG 4 cut(s) 15, 470, 724, 1162
NdeII GATC 4 cut(s) 213, 787, 971, 1042
NlaIII CATG 7 cut(s) 97, 133, 152, 558, 655, 887, 1008
NlaIV GGNNCC 8 cut(s) 33, 123, 137, 138, 156, 165, 412, 542
NmuCI GTSAC 1 cut(s) 508
NspI RCATGY 2 cut(s) 152, 887
PaqCI CACCTGC 1 cut(s) 133
PceI AGGCCT 1 cut(s) 688
PciI ACATGT 1 cut(s) 883
PctI GAATGC 1 cut(s) 383
PflFI GACNNNGTC 1 cut(s) 197
PleI GAGTC 1 cut(s) 640
PluTI GGCGCC 1 cut(s) 158
PpsI GAGTC 1 cut(s) 640
PscI ACATGT 1 cut(s) 883
Psp1406I AACGTT 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 117
PspFI CCCAGC 3 cut(s) 60, 177, 979
PspGI CCWGG 1 cut(s) 117
PspN4I GGNNCC 8 cut(s) 33, 123, 137, 138, 156, 165, 412, 542
PspOMI GGGCCC 2 cut(s) 135, 540
PspPI GGNCC 7 cut(s) 46, 135, 136, 199, 540, 541, 701
PsrI GAACNNNNNNTAC 2 cut(s) 236, 268
PstI CTGCAG 1 cut(s) 228
PstNI CAGNNNCTG 1 cut(s) 939
PsuI RGATCY 2 cut(s) 971, 1042
PsyI GACNNNGTC 1 cut(s) 197
PvuII CAGCTG 2 cut(s) 979, 1221
RsaI GTAC 9 cut(s) 230, 394, 608, 869, 882, 1109, 1139, 1166, 1217
RsaNI GTAC 9 cut(s) 229, 393, 607, 868, 881, 1108, 1138, 1165, 1216
RseI CAYNNNNRTG 1 cut(s) 98
SaqAI TTAA 1 cut(s) 618
Sau3AI GATC 4 cut(s) 213, 787, 971, 1042
Sau96I GGNCC 7 cut(s) 46, 135, 136, 199, 540, 541, 701
ScaI AGTACT 1 cut(s) 230
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 5 cut(s) 15, 119, 470, 724, 1162
SduI GDGCHC 4 cut(s) 139, 415, 544, 988
SfaNI GCATC 3 cut(s) 90, 446, 633
SfcI CTRYAG 1 cut(s) 224
SfoI GGCGCC 1 cut(s) 156
SgrAI CRCCGGYG 1 cut(s) 272
SinI GGWCC 2 cut(s) 199, 701
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 5 cut(s) 344, 418, 696, 760, 1171
SseBI AGGCCT 1 cut(s) 688
SspDI GGCGCC 1 cut(s) 154
SspI AATATT 2 cut(s) 259, 740
SspMI CTAG 1 cut(s) 878
StuI AGGCCT 1 cut(s) 688
StyD4I CCNGG 5 cut(s) 13, 117, 468, 722, 1160
StyI CCWWGG 2 cut(s) 567, 600
TaaI ACNGT 2 cut(s) 872, 1169
TaiI ACGT 1 cut(s) 457
TasI AATT 5 cut(s) 344, 418, 696, 760, 1171
TatI WGTACW 3 cut(s) 228, 880, 1137
TauI GCSGC 1 cut(s) 1071
Tru1I TTAA 1 cut(s) 618
Tru9I TTAA 1 cut(s) 618
TseFI GTSAC 1 cut(s) 508
Tsp45I GTSAC 1 cut(s) 508
TspDTI ATGAA 4 cut(s) 328, 677, 741, 993
TspGWI ACGGA 3 cut(s) 24, 527, 986
Tth111I GACNNNGTC 1 cut(s) 197
VneI GTGCAC 1 cut(s) 984
VpaK11BI GGWCC 2 cut(s) 199, 701
XapI RAATTY 3 cut(s) 344, 418, 760
XceI RCATGY 2 cut(s) 152, 887
XcmI CCANNNNNNNNNTGG 1 cut(s) 1058
XspI CTAG 1 cut(s) 878
ZrmI AGTACT 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.