Polyadenylate-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G11650 AT1G11650 |
| fragaria_vesca | FvH4_3g02320 |
| malus_domestica | MD10G1319600.v1.1 |
| prunus_persica | Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1 |
| pyrus_communis | pycom10g27050 |
| rosa_chinensis | RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531 |
| rosa_laevigata | RLG00000015982 RLG00000031149 |
| rosa_multiflora | Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00072430 |
| rosa_rugosa | Rorug01G0486600 Rorug04G0403900 |
| rosa_samantha | Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700 |
| rosa_wichuraiana | Rw5G002850 Rw5G002890 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 133 |
| Acc36I | ACCTGC | 2 cut(s) | 133, 231 |
| AccB1I | GGYRCC | 3 cut(s) | 121, 154, 410 |
| AccII | CGCG | 1 cut(s) | 83 |
| AclI | AACGTT | 1 cut(s) | 454 |
| AclWI | GGATC | 4 cut(s) | 221, 782, 979, 1037 |
| AcsI | RAATTY | 3 cut(s) | 344, 418, 760 |
| AcuI | CTGAAG | 1 cut(s) | 362 |
| AcyI | GRCGYC | 1 cut(s) | 155 |
| AfaI | GTAC | 9 cut(s) | 230, 394, 608, 869, 882, 1109, 1139, 1166, 1217 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 20, 1160 |
| AflIII | ACRYGT | 1 cut(s) | 883 |
| AgsI | TTSAA | 6 cut(s) | 344, 349, 388, 430, 744, 1023 |
| AjnI | CCWGG | 1 cut(s) | 117 |
| AluBI | AGCT | 7 cut(s) | 172, 877, 939, 979, 1101, 1149, 1221 |
| AluI | AGCT | 7 cut(s) | 172, 877, 939, 979, 1101, 1149, 1221 |
| Alw21I | GWGCWC | 1 cut(s) | 988 |
| Alw26I | GTCTC | 2 cut(s) | 524, 844 |
| Alw44I | GTGCAC | 1 cut(s) | 984 |
| AlwI | GGATC | 4 cut(s) | 221, 782, 979, 1037 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 939 |
| AoxI | GGCC | 4 cut(s) | 46, 135, 540, 686 |
| ApaI | GGGCCC | 2 cut(s) | 139, 544 |
| ApaLI | GTGCAC | 1 cut(s) | 984 |
| ApoI | RAATTY | 3 cut(s) | 344, 418, 760 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 982, 1014 |
| AspLEI | GCGC | 4 cut(s) | 85, 157, 597, 1014 |
| AspS9I | GGNCC | 7 cut(s) | 46, 135, 136, 199, 540, 541, 701 |
| AsuC2I | CCSGG | 4 cut(s) | 15, 470, 724, 1162 |
| AsuHPI | GGTGA | 1 cut(s) | 884 |
| AvaII | GGWCC | 2 cut(s) | 199, 701 |
| AxyI | CCTNAGG | 1 cut(s) | 1035 |
| BaeGI | GKGCMC | 4 cut(s) | 139, 415, 544, 988 |
| BanI | GGYRCC | 3 cut(s) | 121, 154, 410 |
| BanII | GRGCYC | 2 cut(s) | 139, 544 |
| Bbv12I | GWGCWC | 1 cut(s) | 988 |
| BbvCI | CCTCAGC | 1 cut(s) | 168 |
| BccI | CCATC | 3 cut(s) | 229, 559, 818 |
| BceAI | ACGGC | 1 cut(s) | 339 |
| BciT130I | CCWGG | 1 cut(s) | 119 |
| BcnI | CCSGG | 4 cut(s) | 15, 470, 724, 1162 |
| BcoDI | GTCTC | 2 cut(s) | 524, 844 |
| BfaI | CTAG | 1 cut(s) | 878 |
| BfmI | CTRYAG | 1 cut(s) | 224 |
| BfoI | RGCGCY | 1 cut(s) | 158 |
| BfuAI | ACCTGC | 2 cut(s) | 133, 231 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 134 |
| BmcAI | AGTACT | 1 cut(s) | 230 |
| Bme1390I | CCNGG | 5 cut(s) | 15, 119, 470, 724, 1162 |
| Bme18I | GGWCC | 2 cut(s) | 199, 701 |
| BmgT120I | GGNCC | 7 cut(s) | 46, 135, 136, 199, 540, 541, 701 |
| BmiI | GGNNCC | 8 cut(s) | 33, 123, 137, 138, 156, 165, 412, 542 |
| BmrFI | CCNGG | 5 cut(s) | 15, 119, 470, 724, 1162 |
| BmrI | ACTGGG | 1 cut(s) | 442 |
| BmsI | GCATC | 3 cut(s) | 90, 446, 633 |
| BmuI | ACTGGG | 1 cut(s) | 442 |
| Bpu10I | CCTNAGC | 1 cut(s) | 168 |
| BpuMI | CCSGG | 4 cut(s) | 15, 470, 724, 1162 |
| BsaBI | GATNNNNATC | 1 cut(s) | 786 |
| BsaHI | GRCGYC | 1 cut(s) | 155 |
| BsaJI | CCNNGG | 5 cut(s) | 117, 468, 567, 600, 723 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 20, 1160 |
| Bse118I | RCCGGY | 2 cut(s) | 272, 443 |
| Bse1I | ACTGG | 2 cut(s) | 236, 437 |
| Bse21I | CCTNAGG | 1 cut(s) | 1035 |
| Bse3DI | GCAATG | 1 cut(s) | 953 |
| Bse8I | GATNNNNATC | 1 cut(s) | 786 |
| BseBI | CCWGG | 1 cut(s) | 119 |
| BseDI | CCNNGG | 5 cut(s) | 117, 468, 567, 600, 723 |
| BseGI | GGATG | 3 cut(s) | 240, 297, 829 |
| BseJI | GATNNNNATC | 1 cut(s) | 786 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 20, 1160 |
| BseMI | GCAATG | 1 cut(s) | 953 |
| BseMII | CTCAG | 5 cut(s) | 182, 648, 779, 989, 1049 |
| BseNI | ACTGG | 2 cut(s) | 236, 437 |
| BseRI | GAGGAG | 2 cut(s) | 156, 254 |
| BseSI | GKGCMC | 4 cut(s) | 139, 415, 544, 988 |
| BseYI | CCCAGC | 3 cut(s) | 60, 177, 979 |
| BsgI | GTGCAG | 1 cut(s) | 39 |
| Bsh1236I | CGCG | 1 cut(s) | 83 |
| BshFI | GGCC | 4 cut(s) | 48, 137, 542, 688 |
| BshNI | GGYRCC | 3 cut(s) | 121, 154, 410 |
| BsiHKAI | GWGCWC | 1 cut(s) | 988 |
| BsiSI | CCGG | 7 cut(s) | 14, 161, 273, 444, 470, 723, 1161 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 20, 1160 |
| BsmAI | GTCTC | 2 cut(s) | 524, 844 |
| BsmI | GAATGC | 1 cut(s) | 383 |
| BsnI | GGCC | 4 cut(s) | 48, 137, 542, 688 |
| Bsp120I | GGGCCC | 2 cut(s) | 135, 540 |
| Bsp1286I | GDGCHC | 4 cut(s) | 139, 415, 544, 988 |
| Bsp143I | GATC | 4 cut(s) | 213, 787, 971, 1042 |
| BspANI | GGCC | 4 cut(s) | 48, 137, 542, 688 |
| BspCNI | CTCAG | 5 cut(s) | 181, 649, 778, 988, 1048 |
| BspFNI | CGCG | 1 cut(s) | 83 |
| BspLI | GGNNCC | 8 cut(s) | 33, 123, 137, 138, 156, 165, 412, 542 |
| BspMAI | CTGCAG | 1 cut(s) | 228 |
| BspMI | ACCTGC | 2 cut(s) | 133, 231 |
| BspPI | GGATC | 4 cut(s) | 221, 782, 979, 1037 |
| BspT107I | GGYRCC | 3 cut(s) | 121, 154, 410 |
| BsrDI | GCAATG | 1 cut(s) | 953 |
| BsrFI | RCCGGY | 2 cut(s) | 272, 443 |
| BsrI | ACTGG | 2 cut(s) | 236, 437 |
| BssAI | RCCGGY | 2 cut(s) | 272, 443 |
| BssECI | CCNNGG | 5 cut(s) | 117, 468, 567, 600, 723 |
| BssMI | GATC | 4 cut(s) | 213, 787, 971, 1042 |
| BssNI | GRCGYC | 1 cut(s) | 155 |
| BssT1I | CCWWGG | 2 cut(s) | 567, 600 |
| Bst2UI | CCWGG | 1 cut(s) | 119 |
| Bst4CI | ACNGT | 2 cut(s) | 872, 1169 |
| BstACI | GRCGYC | 1 cut(s) | 155 |
| BstC8I | GCNNGC | 7 cut(s) | 22, 50, 57, 183, 206, 648, 905 |
| BstDEI | CTNAG | 5 cut(s) | 168, 657, 765, 975, 1035 |
| BstF5I | GGATG | 3 cut(s) | 240, 297, 829 |
| BstFNI | CGCG | 1 cut(s) | 83 |
| BstH2I | RGCGCY | 1 cut(s) | 158 |
| BstHHI | GCGC | 4 cut(s) | 85, 157, 597, 1014 |
| BstKTI | GATC | 4 cut(s) | 216, 790, 974, 1045 |
| BstMAI | GTCTC | 2 cut(s) | 524, 844 |
| BstMBI | GATC | 4 cut(s) | 213, 787, 971, 1042 |
| BstNI | CCWGG | 1 cut(s) | 119 |
| BstNSI | RCATGY | 2 cut(s) | 152, 887 |
| BstSCI | CCNGG | 5 cut(s) | 13, 117, 468, 722, 1160 |
| BstSFI | CTRYAG | 1 cut(s) | 224 |
| BstSLI | GKGCMC | 4 cut(s) | 139, 415, 544, 988 |
| BstUI | CGCG | 1 cut(s) | 83 |
| BstX2I | RGATCY | 2 cut(s) | 971, 1042 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 68, 1053, 1058 |
| BstYI | RGATCY | 2 cut(s) | 971, 1042 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1035 |
| BsuRI | GGCC | 4 cut(s) | 48, 137, 542, 688 |
| BtgZI | GCGATG | 1 cut(s) | 922 |
| BtsCI | GGATG | 3 cut(s) | 240, 297, 829 |
| BveI | ACCTGC | 2 cut(s) | 133, 231 |
| Cac8I | GCNNGC | 7 cut(s) | 22, 50, 57, 183, 206, 648, 905 |
| CaiI | CAGNNNCTG | 1 cut(s) | 939 |
| CfoI | GCGC | 4 cut(s) | 85, 157, 597, 1014 |
| Cfr10I | RCCGGY | 2 cut(s) | 272, 443 |
| Cfr13I | GGNCC | 7 cut(s) | 46, 135, 136, 199, 540, 541, 701 |
| Csp6I | GTAC | 9 cut(s) | 229, 393, 607, 868, 881, 1108, 1138, 1165, 1216 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 892, 927 |
| CviAII | CATG | 7 cut(s) | 94, 130, 149, 555, 652, 884, 1005 |
| CviQI | GTAC | 9 cut(s) | 229, 393, 607, 868, 881, 1108, 1138, 1165, 1216 |
| DdeI | CTNAG | 5 cut(s) | 168, 657, 765, 975, 1035 |
| DinI | GGCGCC | 1 cut(s) | 156 |
| DpnI | GATC | 4 cut(s) | 215, 789, 973, 1044 |
| DpnII | GATC | 4 cut(s) | 213, 787, 971, 1042 |
| EciI | GGCGGA | 1 cut(s) | 178 |
| Eco130I | CCWWGG | 2 cut(s) | 567, 600 |
| Eco147I | AGGCCT | 1 cut(s) | 688 |
| Eco24I | GRGCYC | 2 cut(s) | 139, 544 |
| Eco47I | GGWCC | 2 cut(s) | 199, 701 |
| Eco57I | CTGAAG | 1 cut(s) | 362 |
| Eco81I | CCTNAGG | 1 cut(s) | 1035 |
| EcoO109I | RGGNCCY | 2 cut(s) | 136, 540 |
| EcoRI | GAATTC | 1 cut(s) | 344 |
| EcoRII | CCWGG | 1 cut(s) | 117 |
| EcoT14I | CCWWGG | 2 cut(s) | 567, 600 |
| EcoT38I | GRGCYC | 2 cut(s) | 139, 544 |
| EgeI | GGCGCC | 1 cut(s) | 156 |
| EheI | GGCGCC | 1 cut(s) | 156 |
| ErhI | CCWWGG | 2 cut(s) | 567, 600 |
| FaeI | CATG | 7 cut(s) | 97, 133, 152, 558, 655, 887, 1008 |
| FatI | CATG | 7 cut(s) | 93, 129, 148, 554, 651, 883, 1004 |
| FauI | CCCGC | 4 cut(s) | 64, 88, 147, 190 |
| FokI | GGATG | 3 cut(s) | 247, 284, 836 |
| FriOI | GRGCYC | 2 cut(s) | 139, 544 |
| FspBI | CTAG | 1 cut(s) | 878 |
| GlaI | GCGC | 4 cut(s) | 84, 156, 596, 1013 |
| GsaI | CCCAGC | 3 cut(s) | 64, 181, 983 |
| HaeII | RGCGCY | 1 cut(s) | 158 |
| HaeIII | GGCC | 4 cut(s) | 48, 137, 542, 688 |
| HapII | CCGG | 7 cut(s) | 14, 161, 273, 444, 470, 723, 1161 |
| HhaI | GCGC | 4 cut(s) | 85, 157, 597, 1014 |
| Hin1I | GRCGYC | 1 cut(s) | 155 |
| Hin1II | CATG | 7 cut(s) | 97, 133, 152, 558, 655, 887, 1008 |
| Hin6I | GCGC | 4 cut(s) | 83, 155, 595, 1012 |
| HinP1I | GCGC | 4 cut(s) | 83, 155, 595, 1012 |
| HinfI | GANTC | 1 cut(s) | 632 |
| HpaII | CCGG | 7 cut(s) | 14, 161, 273, 444, 470, 723, 1161 |
| HphI | GGTGA | 1 cut(s) | 884 |
| Hpy166II | GTNNAC | 1 cut(s) | 986 |
| Hpy188I | TCNGA | 4 cut(s) | 325, 460, 637, 792 |
| Hpy188III | TCNNGA | 2 cut(s) | 821, 889 |
| Hpy8I | GTNNAC | 1 cut(s) | 986 |
| Hpy99I | CGWCG | 2 cut(s) | 40, 197 |
| HpyAV | CCTTC | 1 cut(s) | 1029 |
| HpyCH4III | ACNGT | 2 cut(s) | 872, 1169 |
| HpyCH4IV | ACGT | 1 cut(s) | 454 |
| HpyCH4V | TGCA | 7 cut(s) | 10, 20, 226, 773, 929, 986, 1085 |
| HpyF3I | CTNAG | 5 cut(s) | 168, 657, 765, 975, 1035 |
| HpySE526I | ACGT | 1 cut(s) | 454 |
| Hsp92I | GRCGYC | 1 cut(s) | 155 |
| Hsp92II | CATG | 7 cut(s) | 97, 133, 152, 558, 655, 887, 1008 |
| HspAI | GCGC | 4 cut(s) | 83, 155, 595, 1012 |
| KasI | GGCGCC | 1 cut(s) | 154 |
| Kzo9I | GATC | 4 cut(s) | 213, 787, 971, 1042 |
| LmnI | GCTCC | 3 cut(s) | 37, 169, 177 |
| LweI | GCATC | 3 cut(s) | 90, 446, 633 |
| MaeI | CTAG | 1 cut(s) | 878 |
| MaeII | ACGT | 1 cut(s) | 454 |
| MaeIII | GTNAC | 3 cut(s) | 329, 508, 832 |
| MalI | GATC | 4 cut(s) | 215, 789, 973, 1044 |
| MboI | GATC | 4 cut(s) | 213, 787, 971, 1042 |
| MboII | GAAGA | 2 cut(s) | 257, 959 |
| MflI | RGATCY | 2 cut(s) | 971, 1042 |
| MhlI | GDGCHC | 4 cut(s) | 139, 415, 544, 988 |
| MluCI | AATT | 5 cut(s) | 344, 418, 696, 760, 1171 |
| Mly113I | GGCGCC | 1 cut(s) | 155 |
| MlyI | GAGTC | 1 cut(s) | 641 |
| MmeI | TCCRAC | 1 cut(s) | 469 |
| MnlI | CCTC | 9 cut(s) | 168, 177, 190, 196, 232, 271, 319, 1044, 1058 |
| MseI | TTAA | 1 cut(s) | 618 |
| MslI | CAYNNNNRTG | 1 cut(s) | 98 |
| MspA1I | CMGCKG | 2 cut(s) | 979, 1221 |
| MspI | CCGG | 7 cut(s) | 14, 161, 273, 444, 470, 723, 1161 |
| MspR9I | CCNGG | 5 cut(s) | 15, 119, 470, 724, 1162 |
| Mva1269I | GAATGC | 1 cut(s) | 383 |
| MvaI | CCWGG | 1 cut(s) | 119 |
| MvnI | CGCG | 1 cut(s) | 83 |
| NarI | GGCGCC | 1 cut(s) | 155 |
| NciI | CCSGG | 4 cut(s) | 15, 470, 724, 1162 |
| NdeII | GATC | 4 cut(s) | 213, 787, 971, 1042 |
| NlaIII | CATG | 7 cut(s) | 97, 133, 152, 558, 655, 887, 1008 |
| NlaIV | GGNNCC | 8 cut(s) | 33, 123, 137, 138, 156, 165, 412, 542 |
| NmuCI | GTSAC | 1 cut(s) | 508 |
| NspI | RCATGY | 2 cut(s) | 152, 887 |
| PaqCI | CACCTGC | 1 cut(s) | 133 |
| PceI | AGGCCT | 1 cut(s) | 688 |
| PciI | ACATGT | 1 cut(s) | 883 |
| PctI | GAATGC | 1 cut(s) | 383 |
| PflFI | GACNNNGTC | 1 cut(s) | 197 |
| PleI | GAGTC | 1 cut(s) | 640 |
| PluTI | GGCGCC | 1 cut(s) | 158 |
| PpsI | GAGTC | 1 cut(s) | 640 |
| PscI | ACATGT | 1 cut(s) | 883 |
| Psp1406I | AACGTT | 1 cut(s) | 454 |
| Psp6I | CCWGG | 1 cut(s) | 117 |
| PspFI | CCCAGC | 3 cut(s) | 60, 177, 979 |
| PspGI | CCWGG | 1 cut(s) | 117 |
| PspN4I | GGNNCC | 8 cut(s) | 33, 123, 137, 138, 156, 165, 412, 542 |
| PspOMI | GGGCCC | 2 cut(s) | 135, 540 |
| PspPI | GGNCC | 7 cut(s) | 46, 135, 136, 199, 540, 541, 701 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 236, 268 |
| PstI | CTGCAG | 1 cut(s) | 228 |
| PstNI | CAGNNNCTG | 1 cut(s) | 939 |
| PsuI | RGATCY | 2 cut(s) | 971, 1042 |
| PsyI | GACNNNGTC | 1 cut(s) | 197 |
| PvuII | CAGCTG | 2 cut(s) | 979, 1221 |
| RsaI | GTAC | 9 cut(s) | 230, 394, 608, 869, 882, 1109, 1139, 1166, 1217 |
| RsaNI | GTAC | 9 cut(s) | 229, 393, 607, 868, 881, 1108, 1138, 1165, 1216 |
| RseI | CAYNNNNRTG | 1 cut(s) | 98 |
| SaqAI | TTAA | 1 cut(s) | 618 |
| Sau3AI | GATC | 4 cut(s) | 213, 787, 971, 1042 |
| Sau96I | GGNCC | 7 cut(s) | 46, 135, 136, 199, 540, 541, 701 |
| ScaI | AGTACT | 1 cut(s) | 230 |
| SchI | GAGTC | 1 cut(s) | 641 |
| ScrFI | CCNGG | 5 cut(s) | 15, 119, 470, 724, 1162 |
| SduI | GDGCHC | 4 cut(s) | 139, 415, 544, 988 |
| SfaNI | GCATC | 3 cut(s) | 90, 446, 633 |
| SfcI | CTRYAG | 1 cut(s) | 224 |
| SfoI | GGCGCC | 1 cut(s) | 156 |
| SgrAI | CRCCGGYG | 1 cut(s) | 272 |
| SinI | GGWCC | 2 cut(s) | 199, 701 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 98 |
| Sse9I | AATT | 5 cut(s) | 344, 418, 696, 760, 1171 |
| SseBI | AGGCCT | 1 cut(s) | 688 |
| SspDI | GGCGCC | 1 cut(s) | 154 |
| SspI | AATATT | 2 cut(s) | 259, 740 |
| SspMI | CTAG | 1 cut(s) | 878 |
| StuI | AGGCCT | 1 cut(s) | 688 |
| StyD4I | CCNGG | 5 cut(s) | 13, 117, 468, 722, 1160 |
| StyI | CCWWGG | 2 cut(s) | 567, 600 |
| TaaI | ACNGT | 2 cut(s) | 872, 1169 |
| TaiI | ACGT | 1 cut(s) | 457 |
| TasI | AATT | 5 cut(s) | 344, 418, 696, 760, 1171 |
| TatI | WGTACW | 3 cut(s) | 228, 880, 1137 |
| TauI | GCSGC | 1 cut(s) | 1071 |
| Tru1I | TTAA | 1 cut(s) | 618 |
| Tru9I | TTAA | 1 cut(s) | 618 |
| TseFI | GTSAC | 1 cut(s) | 508 |
| Tsp45I | GTSAC | 1 cut(s) | 508 |
| TspDTI | ATGAA | 4 cut(s) | 328, 677, 741, 993 |
| TspGWI | ACGGA | 3 cut(s) | 24, 527, 986 |
| Tth111I | GACNNNGTC | 1 cut(s) | 197 |
| VneI | GTGCAC | 1 cut(s) | 984 |
| VpaK11BI | GGWCC | 2 cut(s) | 199, 701 |
| XapI | RAATTY | 3 cut(s) | 344, 418, 760 |
| XceI | RCATGY | 2 cut(s) | 152, 887 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1058 |
| XspI | CTAG | 1 cut(s) | 878 |
| ZrmI | AGTACT | 1 cut(s) | 230 |