Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Reverse (-)

2172862 .. 2176260

Gene Structure 3399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG033500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGATGCAACCCGGCTCCGGTCTGGCTCCGTCGCAAATGGGCCAGCAGCCGGCCCAGCAGTACGGCCAGCAGCCGCCCGCCGCCCAGCCCTACATGATGATGCCGCCTCCGCCTCCTGCCGTCCAGGCCCAGCCGATGTGGGCCCCGCAGTCGCATTTAGCTCAGGCTGCATCCTTTCAGCAAAAGATGATAATTAATTTCCAAGACATTTATTTTCTTAAGTTTTCTAGAAAATCTGGGCAAGGAGGTCAAGAGGCTCTGCCATCTAAGGGCGTGCCACTGATTACAGCTGAAAATGTTGCCCTTAAGTGCGTGGCCTCACTTAGGAGCCGTGCTGAAGAGGCTTTGCAAGGATTAAACAATTCTCAGATTGGTGGACAGAATATCCGACTTTCTTGGGGCCGCAGTCCTTCAAACAAGCAGCAGGCTCAGGCAGATCCTAACCAATGGAATGCTGGCTATTATGGATATGCACCAACCCCCGAGGGATATGGATATGCCCAAGTATCCCAAGACCCTAACATGTACTATGGAGGGTATCCTACTGGATATGGCAATTACCAGCAGTCACAGCAGCAACAGCAGCAGCAAGTGGGTTATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

201

Amino Acids

22.0

Weight (kDa)

8.92

Isoelectric Point (pI)

72.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	74, 78, 81, 104, 110, 146, 403
AclWI	GGATC	1 cut(s)	431
AcoI	YGGCCR	1 cut(s)	64
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	2 cut(s)	62, 527
AfiI	CCNNNNNNNGG	4 cut(s)	17, 49, 269, 324
AflII	CTTAAG	2 cut(s)	218, 305
AflIII	ACRYGT	1 cut(s)	522
AgsI	TTSAA	1 cut(s)	414
AjnI	CCWGG	1 cut(s)	123
AluBI	AGCT	2 cut(s)	161, 290
AluI	AGCT	2 cut(s)	161, 290
AlwI	GGATC	1 cut(s)	431
Ama87I	CYCGRG	1 cut(s)	482
AoxI	GGCC	7 cut(s)	40, 51, 64, 126, 141, 315, 400
ApaI	GGGCCC	1 cut(s)	145
ApeKI	GCWGC	7 cut(s)	46, 70, 167, 421, 574, 583, 586
AseI	ATTAAT	1 cut(s)	195
AspS9I	GGNCC	6 cut(s)	40, 52, 127, 141, 142, 400
AsuC2I	CCSGG	1 cut(s)	12
AvaI	CYCGRG	1 cut(s)	482
BaeGI	GKGCMC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	145
BbvI	GCAGC	7 cut(s)	58, 82, 154, 433, 586, 595, 598
BccI	CCATC	1 cut(s)	271
BceAI	ACGGC	3 cut(s)	79, 104, 315
BciT130I	CCWGG	1 cut(s)	125
BciVI	GTATCC	2 cut(s)	517, 549
BcnI	CCSGG	1 cut(s)	12
BfaI	CTAG	1 cut(s)	228
BfrI	CTTAAG	2 cut(s)	218, 305
BfuI	GTATCC	2 cut(s)	517, 549
BglI	GCCNNNNNGGC	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	12, 125
BmeT110I	CYCGRG	1 cut(s)	482
BmgT120I	GGNCC	6 cut(s)	40, 52, 127, 141, 142, 400
BmiI	GGNNCC	6 cut(s)	16, 27, 143, 144, 329, 401
BmrFI	CCNGG	2 cut(s)	12, 125
BmsI	GCATC	2 cut(s)	90, 179
Bpu10I	CCTNAGC	2 cut(s)	162, 429
BpuMI	CCSGG	1 cut(s)	12
BsaJI	CCNNGG	1 cut(s)	483
BsaWI	WCCGGW	1 cut(s)	17
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 49, 269, 324
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	550
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	1 cut(s)	483
BseGI	GGATG	1 cut(s)	170
BseLI	CCNNNNNNNGG	4 cut(s)	17, 49, 269, 324
BseMII	CTCAG	3 cut(s)	176, 380, 443
BseNI	ACTGG	1 cut(s)	550
BseSI	GKGCMC	1 cut(s)	145
BseXI	GCAGC	7 cut(s)	58, 82, 154, 433, 586, 595, 598
BseYI	CCCAGC	3 cut(s)	54, 84, 129
BshFI	GGCC	7 cut(s)	42, 53, 66, 128, 143, 317, 402
BsiHKCI	CYCGRG	1 cut(s)	482
BsiSI	CCGG	3 cut(s)	12, 18, 50
BslI	CCNNNNNNNGG	4 cut(s)	17, 49, 269, 324
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	7 cut(s)	42, 53, 66, 128, 143, 317, 402
BsoBI	CYCGRG	1 cut(s)	482
Bsp120I	GGGCCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp143I	GATC	1 cut(s)	436
BspACI	CCGC	7 cut(s)	74, 78, 81, 104, 110, 146, 403
BspANI	GGCC	7 cut(s)	42, 53, 66, 128, 143, 317, 402
BspCNI	CTCAG	3 cut(s)	175, 379, 442
BspLI	GGNNCC	6 cut(s)	16, 27, 143, 144, 329, 401
BspPI	GGATC	1 cut(s)	431
BspTI	CTTAAG	2 cut(s)	218, 305
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	1 cut(s)	550
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	483
BssMI	GATC	1 cut(s)	436
Bst2UI	CCWGG	1 cut(s)	125
Bst6I	CTCTTC	1 cut(s)	333
BstAFI	CTTAAG	2 cut(s)	218, 305
BstC8I	GCNNGC	7 cut(s)	44, 51, 68, 78, 275, 426, 457
BstDEI	CTNAG	5 cut(s)	162, 267, 323, 366, 429
BstENI	CCTNNNNNAGG	1 cut(s)	322
BstF5I	GGATG	1 cut(s)	170
BstKTI	GATC	1 cut(s)	439
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	8 cut(s)	55, 109, 125, 167, 341, 571, 580, 583
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	526
BstSCI	CCNGG	2 cut(s)	10, 123
BstSLI	GKGCMC	1 cut(s)	145
BstV1I	GCAGC	7 cut(s)	58, 82, 154, 433, 586, 595, 598
BstX2I	RGATCY	1 cut(s)	436
BstYI	RGATCY	1 cut(s)	436
BsuI	GTATCC	2 cut(s)	517, 549
BsuRI	GGCC	7 cut(s)	42, 53, 66, 128, 143, 317, 402
BtsCI	GGATG	1 cut(s)	170
BtsIMutI	CAGTG	1 cut(s)	278
Cac8I	GCNNGC	7 cut(s)	44, 51, 68, 78, 275, 426, 457
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	6 cut(s)	40, 52, 127, 141, 142, 400
Csp6I	GTAC	2 cut(s)	61, 526
CviAII	CATG	2 cut(s)	94, 523
CviQI	GTAC	2 cut(s)	61, 526
DdeI	CTNAG	5 cut(s)	162, 267, 323, 366, 429
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
EaeI	YGGCCR	1 cut(s)	64
Eam1104I	CTCTTC	1 cut(s)	333
EarI	CTCTTC	1 cut(s)	333
EciI	GGCGGA	1 cut(s)	99
Eco24I	GRGCYC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	482
EcoNI	CCTNNNNNAGG	1 cut(s)	322
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	123
EcoT38I	GRGCYC	1 cut(s)	145
FaeI	CATG	2 cut(s)	97, 526
FaiI	YATR	9 cut(s)	95, 465, 471, 492, 498, 524, 531, 552, 600
FatI	CATG	2 cut(s)	93, 522
FauI	CCCGC	2 cut(s)	85, 153
FokI	GGATG	1 cut(s)	157
FriOI	GRGCYC	1 cut(s)	145
FspBI	CTAG	1 cut(s)	228
GsaI	CCCAGC	3 cut(s)	58, 88, 133
HaeIII	GGCC	7 cut(s)	42, 53, 66, 128, 143, 317, 402
HapII	CCGG	3 cut(s)	12, 18, 50
Hin1II	CATG	2 cut(s)	97, 526
HpaII	CCGG	3 cut(s)	12, 18, 50
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	2 cut(s)	369, 389
Hpy188III	TCNNGA	2 cut(s)	228, 251
Hpy8I	GTNNAC	1 cut(s)	377
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	420
HpyCH4V	TGCA	4 cut(s)	7, 170, 349, 473
HpyF10VI	GCNNNNNNNGC	8 cut(s)	55, 109, 125, 167, 341, 571, 580, 583
HpyF3I	CTNAG	5 cut(s)	162, 267, 323, 366, 429
Hsp92II	CATG	2 cut(s)	97, 526
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
Kzo9I	GATC	1 cut(s)	436
LmnI	GCTCC	3 cut(s)	20, 31, 327
Lsp1109I	GCAGC	7 cut(s)	58, 82, 154, 433, 586, 595, 598
LweI	GCATC	2 cut(s)	90, 179
MaeI	CTAG	1 cut(s)	228
MaeIII	GTNAC	1 cut(s)	567
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	1 cut(s)	350
MflI	RGATCY	1 cut(s)	436
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	4 cut(s)	192, 196, 361, 556
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	8 cut(s)	117, 123, 239, 247, 328, 334, 478, 527
MroNI	GCCGGC	1 cut(s)	49
MseI	TTAA	4 cut(s)	195, 219, 306, 356
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	290
MspCI	CTTAAG	2 cut(s)	218, 305
MspI	CCGG	3 cut(s)	12, 18, 50
MspR9I	CCNGG	2 cut(s)	12, 125
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	1 cut(s)	125
MwoI	GCNNNNNNNGC	8 cut(s)	55, 109, 125, 167, 341, 571, 580, 583
NaeI	GCCGGC	1 cut(s)	51
NciI	CCSGG	1 cut(s)	12
NdeII	GATC	1 cut(s)	436
NgoMIV	GCCGGC	1 cut(s)	49
NlaIII	CATG	2 cut(s)	97, 526
NlaIV	GGNNCC	6 cut(s)	16, 27, 143, 144, 329, 401
NmuCI	GTSAC	1 cut(s)	567
NspI	RCATGY	1 cut(s)	526
PciI	ACATGT	1 cut(s)	522
PctI	GAATGC	1 cut(s)	457
PdiI	GCCGGC	1 cut(s)	51
PscI	ACATGT	1 cut(s)	522
PshBI	ATTAAT	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	123
PspFI	CCCAGC	3 cut(s)	54, 84, 129
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	6 cut(s)	16, 27, 143, 144, 329, 401
PspOMI	GGGCCC	1 cut(s)	141
PspPI	GGNCC	6 cut(s)	40, 52, 127, 141, 142, 400
PsuI	RGATCY	1 cut(s)	436
PvuII	CAGCTG	1 cut(s)	290
RsaI	GTAC	2 cut(s)	62, 527
RsaNI	GTAC	2 cut(s)	61, 526
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	4 cut(s)	195, 219, 306, 356
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	6 cut(s)	40, 52, 127, 141, 142, 400
ScrFI	CCNGG	2 cut(s)	12, 125
SduI	GDGCHC	1 cut(s)	145
SetI	ASST	3 cut(s)	163, 250, 292
SfaNI	GCATC	2 cut(s)	90, 179
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	218, 305
SmoI	CTYRAG	2 cut(s)	218, 305
Sse9I	AATT	4 cut(s)	192, 196, 361, 556
SsiI	CCGC	7 cut(s)	74, 78, 81, 104, 110, 146, 403
SspMI	CTAG	1 cut(s)	228
StyD4I	CCNGG	2 cut(s)	10, 123
TasI	AATT	4 cut(s)	192, 196, 361, 556
TatI	WGTACW	1 cut(s)	525
TauI	GCSGC	4 cut(s)	76, 83, 106, 405
Tru1I	TTAA	4 cut(s)	195, 219, 306, 356
Tru9I	TTAA	4 cut(s)	195, 219, 306, 356
TscAI	CASTG	1 cut(s)	285
TseFI	GTSAC	1 cut(s)	567
TseI	GCWGC	7 cut(s)	46, 70, 167, 421, 574, 583, 586
Tsp45I	GTSAC	1 cut(s)	567
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	285
Vha464I	CTTAAG	2 cut(s)	218, 305
VspI	ATTAAT	1 cut(s)	195
XagI	CCTNNNNNAGG	1 cut(s)	322
XbaI	TCTAGA	1 cut(s)	227
XceI	RCATGY	1 cut(s)	526
XcmI	CCANNNNNNNNNTGG	1 cut(s)	452
XspI	CTAG	1 cut(s)	228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.