Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Forward (+)

3306681 .. 3308366

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG041400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGTTCTTAAATACACAAACAATACAAGGAAGCACTGGGAAATATGCTTTTAGCGCGTGGCCTCACTTAGCTTCATATCAGAGTTCTCCAGGTGCAAAGAATAAGACTGATTCCAATAACACAACTGTGGGAGCCCTGCTGCAGAGGGATTTGCAAGGATTAAACAATTCTCAGCTTGGGGAACAAAATATCCAACTTTCTTGGGGTTGCAGTCCTTCAAACAAGCAGCAGCAGGCTCAGGCAGATCCAAACCAATGGAATGCTGGCTATTATGGATACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

93

Amino Acids

10.19

Weight (kDa)

7.87

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	56
AclWI	GGATC	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	88
AleI	CACNNNNGTG	1 cut(s)	125
AloI	GAACNNNNNNTCC	2 cut(s)	174, 206
AluBI	AGCT	2 cut(s)	71, 175
AluI	AGCT	2 cut(s)	71, 175
AlwI	GGATC	1 cut(s)	239
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	139, 226, 229
AspLEI	GCGC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	136
BbvI	GCAGC	3 cut(s)	126, 238, 241
BciT130I	CCWGG	1 cut(s)	90
BciVI	GTATCC	1 cut(s)	269
BfaI	CTAG	1 cut(s)	280
BfmI	CTRYAG	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	269
BisI	GCNGC	3 cut(s)	140, 227, 230
BlsI	GCNGC	3 cut(s)	141, 228, 231
Bme1390I	CCNGG	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	237
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	185, 251
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	126, 238, 241
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	61
BsmI	GAATGC	1 cut(s)	265
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	1 cut(s)	244
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	2 cut(s)	184, 250
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	133
BspMAI	CTGCAG	1 cut(s)	144
BspPI	GGATC	1 cut(s)	239
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	244
Bst2UI	CCWGG	1 cut(s)	90
Bst4CI	ACNGT	1 cut(s)	127
BstC8I	GCNNGC	2 cut(s)	234, 265
BstDEI	CTNAG	3 cut(s)	67, 171, 237
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	247
BstMBI	GATC	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	90
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	140
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	3 cut(s)	126, 238, 241
BstX2I	RGATCY	1 cut(s)	244
BstXI	CCANNNNNNTGG	1 cut(s)	255
BstYI	RGATCY	1 cut(s)	244
BsuI	GTATCC	1 cut(s)	269
BsuRI	GGCC	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	234, 265
CfoI	GCGC	1 cut(s)	56
CviJI	RGCY	6 cut(s)	61, 71, 134, 175, 236, 267
CviKI_1	RGCY	6 cut(s)	61, 71, 134, 175, 236, 267
DdeI	CTNAG	3 cut(s)	67, 171, 237
DpnI	GATC	1 cut(s)	246
DpnII	GATC	1 cut(s)	244
Eco24I	GRGCYC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	136
FaiI	YATR	3 cut(s)	45, 76, 273
Fnu4HI	GCNGC	3 cut(s)	140, 227, 230
FriOI	GRGCYC	1 cut(s)	136
Fsp4HI	GCNGC	3 cut(s)	140, 227, 230
FspBI	CTAG	1 cut(s)	280
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	3 cut(s)	140, 227, 230
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	56
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HinfI	GANTC	1 cut(s)	110
Hpy188I	TCNGA	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	225
HpyCH4III	ACNGT	1 cut(s)	127
HpyCH4V	TGCA	4 cut(s)	95, 142, 154, 210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	67, 171, 237
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	244
LmnI	GCTCC	1 cut(s)	131
LpnPI	CCDG	7 cut(s)	21, 75, 102, 149, 218, 224, 249
Lsp1109I	GCAGC	3 cut(s)	126, 238, 241
MaeI	CTAG	1 cut(s)	280
MalI	GATC	1 cut(s)	246
MboI	GATC	1 cut(s)	244
MflI	RGATCY	1 cut(s)	244
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	1 cut(s)	166
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	2 cut(s)	72, 138
MseI	TTAA	2 cut(s)	8, 161
MslI	CAYNNNNRTG	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	265
MvaI	CCWGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	244
NlaIV	GGNNCC	1 cut(s)	133
OliI	CACNNNNGTG	1 cut(s)	125
PctI	GAATGC	1 cut(s)	265
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	141, 228, 231
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	133
PstI	CTGCAG	1 cut(s)	144
PsuI	RGATCY	1 cut(s)	244
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	8, 161
SatI	GCNGC	3 cut(s)	140, 227, 230
Sau3AI	GATC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	136
SetI	ASST	3 cut(s)	73, 94, 177
SfcI	CTRYAG	1 cut(s)	140
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	1 cut(s)	166
SspMI	CTAG	1 cut(s)	280
StyD4I	CCNGG	1 cut(s)	88
TaaI	ACNGT	1 cut(s)	127
TasI	AATT	1 cut(s)	166
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	8, 161
Tru9I	TTAA	2 cut(s)	8, 161
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	3 cut(s)	139, 226, 229
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	260
XspI	CTAG	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.