Rh5AG031000

Polyadenylate-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0005574
Physical Location & Seq
Reverse (-)
2136844 .. 2176261
39418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG031000.1

Sequence Viewer

Length: 1158 bp
ATGATGCAACCCGGCTCCGGTCTGGCTCCGTCGCAAATGGGCCAGCAGCCGGCCCAGCAGTACGGCCAGCAGCCGCCCGCCGCCCAGCCCTACATGATGATGCCGCCTCCGCCTCCTGCCGTCCAGGCCCAGCCGATGTGGGCCCCGCAGTCGCATGTGGCCCCGCCGCAGCCGCAGCCGGCGCAGCCCACCAGCGCCGACGAGGTCCGCACGCTCTGGATCGGCGACTTGCAGTACTGGATGGAAGAGACCTATCTTTTCAGTATCTTTGCCAACACCGGCGAGGTTGTTAGTGTGAAAGTCATCCGGAATAAGCAAACTACTCAATCAGAGGGCTATGGGTTTATTGAGTTTGTTAATCGAGCTGCTGCAGAAAGAGTGCTTCAGACGTACAATGGTACCCCTATGCCAAATGGGGGCCAGCCTTTCAGATTGAACTGGGCATCTGCAGGGGAGAAGCGTTCTGATGATACGCCTGATTATACAATATTTGTGGGCGACTTGGCTGTGGATGTGACAGATTATATGCTACAAGAGATATTTAAGGCTCGCTATCCATCATGCAAGGGAGCCAAGGTTGTTATTGACAGACTTACCGGCCGCACCAAGGGATATGGGTTTGTTAAGTTTGGAGATGAGAGTGAACAGTTGCGTGCAATGACCGAGATGAATGGAGTTGTTTGCTCTTCACGGCCCATGCGAATTGGGCCAGCTGCAAACAAAAATGCTGGGGGTAATCAGCAATATTCGAAAGCTTCATATCAGAGTTCTCCAGGTGCAAAGAATGAGACCGATCCCAATAATACAACTATATTTGTTGGAAATCTGGATGCCAACGTTACTGATGATCATTTGAGAACAGTTTTTCGCCAGTATGGTGAGCTAGTTCATGTTAAGATACCAGCAGGCAAGCGATGTGGGTTTGTTCAGTTCGCAGACAGGAGCCGTGCTGAAGAGGCTTTGCAAGGATTAAATAATTCTCAGATTGGTGGACAAAATATCCGACTTTCTTGGGGTCGCAGTCCTTCAAACAAGCAGCAGGCTCAGGCAGATCCAAACCAATGGAATACTGGCTATTATGGATATGCACCAACCCCCGAGGGATATGGATATGCCCAATACTATTTCGGATGTAATCTTGTATCACTAAGTTTTTAA

Protein Analysis

385

Amino Acids

42.49

Weight (kDa)

6.84

Isoelectric Point (pI)

52.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 72 - 136 8.2e-13 RNA recognition motif
RRM_1 PF00076 163 - 232 4e-13 RNA recognition motif
RRM_5 PF13893 249 - 340 6e-07 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_occluded PF16842 270 - 336 4e-06 Occluded RNA-recognition motif
RRM_1 PF00076 271 - 335 2.3e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 398
AccB1I GGYRCC 1 cut(s) 398
AccIII TCCGGA 1 cut(s) 306
AclI AACGTT 1 cut(s) 837
AclWI GGATC 3 cut(s) 227, 788, 1046
AcoI YGGCCR 2 cut(s) 64, 598
AcuI CTGAAG 2 cut(s) 368, 972
AfaI GTAC 4 cut(s) 62, 236, 392, 400
AfiI CCNNNNNNNGG 4 cut(s) 17, 49, 416, 607
AgsI TTSAA 2 cut(s) 436, 1029
AjnI CCWGG 2 cut(s) 123, 772
AluBI AGCT 4 cut(s) 365, 713, 755, 883
AluI AGCT 4 cut(s) 365, 713, 755, 883
Alw26I GTCTC 2 cut(s) 242, 782
AlwI GGATC 3 cut(s) 227, 788, 1046
Ama87I CYCGRG 1 cut(s) 1097
Aor13HI TCCGGA 1 cut(s) 306
ApaI GGGCCC 1 cut(s) 145
ApeKI GCWGC 9 cut(s) 46, 70, 169, 175, 184, 365, 368, 713, 1036
Asp718I GGTACC 1 cut(s) 398
AspLEI GCGC 2 cut(s) 184, 197
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 1 cut(s) 890
AsuII TTCGAA 1 cut(s) 749
AvaI CYCGRG 1 cut(s) 1097
AvaII GGWCC 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 145
BaeI ACNNNNGTAYC 2 cut(s) 382, 415
BanI GGYRCC 1 cut(s) 398
BanII GRGCYC 1 cut(s) 145
BbvI GCAGC 9 cut(s) 58, 82, 181, 187, 196, 352, 355, 700, 1048
BccI CCATC 2 cut(s) 235, 565
BceAI ACGGC 4 cut(s) 79, 104, 707, 930
BciT130I CCWGG 2 cut(s) 125, 774
BclI TGATCA 1 cut(s) 847
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 2 cut(s) 242, 782
BfaI CTAG 1 cut(s) 884
BfmI CTRYAG 2 cut(s) 369, 447
BfoI RGCGCY 1 cut(s) 198
BglI GCCNNNNNGGC 1 cut(s) 125
BmcAI AGTACT 1 cut(s) 236
Bme1390I CCNGG 3 cut(s) 12, 125, 774
Bme18I GGWCC 1 cut(s) 205
BmeT110I CYCGRG 1 cut(s) 1097
BmiI GGNNCC 9 cut(s) 16, 27, 143, 144, 162, 400, 419, 571, 944
BmrFI CCNGG 3 cut(s) 12, 125, 774
BmrI ACTGGG 1 cut(s) 448
BmsI GCATC 3 cut(s) 90, 452, 820
BmuI ACTGGG 1 cut(s) 448
BpmI CTGGAG 1 cut(s) 756
Bpu10I CCTNAGC 1 cut(s) 1044
Bpu14I TTCGAA 1 cut(s) 749
BpuMI CCSGG 1 cut(s) 12
BsaI GGTCTC 2 cut(s) 242, 782
BsaJI CCNNGG 3 cut(s) 573, 606, 1098
BsaWI WCCGGW 2 cut(s) 17, 306
BsaXI ACNNNNNCTCC 2 cut(s) 561, 591
Bsc4I CCNNNNNNNGG 4 cut(s) 17, 49, 416, 607
Bse118I RCCGGY 4 cut(s) 49, 178, 278, 596
Bse1I ACTGG 4 cut(s) 242, 443, 871, 1075
Bse3DI GCAATG 1 cut(s) 663
BseAI TCCGGA 1 cut(s) 306
BseBI CCWGG 2 cut(s) 125, 774
BseDI CCNNGG 3 cut(s) 573, 606, 1098
BseGI GGATG 5 cut(s) 246, 303, 517, 835, 1136
BseLI CCNNNNNNNGG 4 cut(s) 17, 49, 416, 607
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 2 cut(s) 995, 1058
BseNI ACTGG 4 cut(s) 242, 443, 871, 1075
BseSI GKGCMC 1 cut(s) 145
BseX3I CGGCCG 1 cut(s) 598
BseXI GCAGC 9 cut(s) 58, 82, 181, 187, 196, 352, 355, 700, 1048
BseYI CCCAGC 4 cut(s) 54, 84, 129, 728
Bsh1285I CGRYCG 1 cut(s) 601
BshNI GGYRCC 1 cut(s) 398
BsiEI CGRYCG 1 cut(s) 601
BsiHKCI CYCGRG 1 cut(s) 1097
BsiSI CCGG 7 cut(s) 12, 18, 50, 179, 279, 307, 597
BslI CCNNNNNNNGG 4 cut(s) 17, 49, 416, 607
BsmAI GTCTC 2 cut(s) 242, 782
Bso31I GGTCTC 2 cut(s) 242, 782
BsoBI CYCGRG 1 cut(s) 1097
Bsp119I TTCGAA 1 cut(s) 749
Bsp120I GGGCCC 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 145
Bsp13I TCCGGA 1 cut(s) 306
Bsp143I GATC 4 cut(s) 219, 793, 847, 1051
BspCNI CTCAG 2 cut(s) 994, 1057
BspEI TCCGGA 1 cut(s) 306
BspLI GGNNCC 9 cut(s) 16, 27, 143, 144, 162, 400, 419, 571, 944
BspMAI CTGCAG 2 cut(s) 373, 451
BspPI GGATC 3 cut(s) 227, 788, 1046
BspQI GCTCTTC 1 cut(s) 691
BspT104I TTCGAA 1 cut(s) 749
BspT107I GGYRCC 1 cut(s) 398
BspTNI GGTCTC 2 cut(s) 242, 782
BsrDI GCAATG 1 cut(s) 663
BsrFI RCCGGY 4 cut(s) 49, 178, 278, 596
BsrI ACTGG 4 cut(s) 242, 443, 871, 1075
BssAI RCCGGY 4 cut(s) 49, 178, 278, 596
BssECI CCNNGG 3 cut(s) 573, 606, 1098
BssMI GATC 4 cut(s) 219, 793, 847, 1051
BssT1I CCWWGG 2 cut(s) 573, 606
Bst2UI CCWGG 2 cut(s) 125, 774
Bst4CI ACNGT 2 cut(s) 648, 862
Bst6I CTCTTC 3 cut(s) 240, 691, 948
BstBI TTCGAA 1 cut(s) 749
BstDEI CTNAG 3 cut(s) 981, 1044, 1148
BstF5I GGATG 5 cut(s) 246, 303, 517, 835, 1136
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 2 cut(s) 184, 197
BstKTI GATC 4 cut(s) 222, 796, 850, 1054
BstMAI GTCTC 2 cut(s) 242, 782
BstMBI GATC 4 cut(s) 219, 793, 847, 1051
BstMCI CGRYCG 1 cut(s) 601
BstMWI GCNNNNNNNGC 9 cut(s) 55, 109, 125, 172, 175, 181, 184, 706, 956
BstNI CCWGG 2 cut(s) 125, 774
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 3 cut(s) 10, 123, 772
BstSFI CTRYAG 2 cut(s) 369, 447
BstSLI GKGCMC 1 cut(s) 145
BstV1I GCAGC 9 cut(s) 58, 82, 181, 187, 196, 352, 355, 700, 1048
BstX2I RGATCY 1 cut(s) 1051
BstXI CCANNNNNNTGG 1 cut(s) 1062
BstYI RGATCY 1 cut(s) 1051
BstZI CGGCCG 1 cut(s) 598
BtgZI GCGATG 1 cut(s) 928
BtsCI GGATG 5 cut(s) 246, 303, 517, 835, 1136
CfoI GCGC 2 cut(s) 184, 197
Cfr10I RCCGGY 4 cut(s) 49, 178, 278, 596
Csp6I GTAC 4 cut(s) 61, 235, 391, 399
CspCI CAANNNNNGTGG 4 cut(s) 474, 509, 898, 933
CviAII CATG 5 cut(s) 94, 155, 561, 697, 890
CviQI GTAC 4 cut(s) 61, 235, 391, 399
DdeI CTNAG 3 cut(s) 981, 1044, 1148
DpnI GATC 4 cut(s) 221, 795, 849, 1053
DpnII GATC 4 cut(s) 219, 793, 847, 1051
EaeI YGGCCR 2 cut(s) 64, 598
EagI CGGCCG 1 cut(s) 598
Eam1104I CTCTTC 3 cut(s) 240, 691, 948
EarI CTCTTC 3 cut(s) 240, 691, 948
EciI GGCGGA 1 cut(s) 99
EclXI CGGCCG 1 cut(s) 598
Eco130I CCWWGG 2 cut(s) 573, 606
Eco24I GRGCYC 1 cut(s) 145
Eco31I GGTCTC 2 cut(s) 242, 782
Eco47I GGWCC 1 cut(s) 205
Eco52I CGGCCG 1 cut(s) 598
Eco57I CTGAAG 2 cut(s) 368, 972
Eco88I CYCGRG 1 cut(s) 1097
EcoO109I RGGNCCY 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 123, 772
EcoT14I CCWWGG 2 cut(s) 573, 606
EcoT38I GRGCYC 1 cut(s) 145
ErhI CCWWGG 2 cut(s) 573, 606
FaeI CATG 5 cut(s) 97, 158, 564, 700, 893
FatI CATG 5 cut(s) 93, 154, 560, 696, 889
FauI CCCGC 3 cut(s) 85, 153, 171
FbaI TGATCA 1 cut(s) 847
FokI GGATG 5 cut(s) 253, 290, 524, 842, 1143
FriOI GRGCYC 1 cut(s) 145
FspBI CTAG 1 cut(s) 884
GlaI GCGC 2 cut(s) 183, 196
GsaI CCCAGC 4 cut(s) 58, 88, 133, 732
GsuI CTGGAG 1 cut(s) 756
HaeII RGCGCY 1 cut(s) 198
HapII CCGG 7 cut(s) 12, 18, 50, 179, 279, 307, 597
HhaI GCGC 2 cut(s) 184, 197
Hin1II CATG 5 cut(s) 97, 158, 564, 700, 893
Hin6I GCGC 2 cut(s) 182, 195
HinP1I GCGC 2 cut(s) 182, 195
HindIII AAGCTT 1 cut(s) 753
HpaII CCGG 7 cut(s) 12, 18, 50, 179, 279, 307, 597
HphI GGTGA 1 cut(s) 890
Hpy166II GTNNAC 2 cut(s) 644, 992
Hpy188I TCNGA 8 cut(s) 331, 387, 431, 466, 765, 984, 1004, 1130
Hpy188III TCNNGA 3 cut(s) 217, 307, 827
Hpy8I GTNNAC 2 cut(s) 644, 992
Hpy99I CGWCG 2 cut(s) 34, 203
HpyAV CCTTC 1 cut(s) 1035
HpyCH4III ACNGT 2 cut(s) 648, 862
HpyCH4IV ACGT 2 cut(s) 389, 837
HpyF10VI GCNNNNNNNGC 9 cut(s) 55, 109, 125, 172, 175, 181, 184, 706, 956
HpyF3I CTNAG 3 cut(s) 981, 1044, 1148
HpySE526I ACGT 2 cut(s) 389, 837
Hsp92II CATG 5 cut(s) 97, 158, 564, 700, 893
HspAI GCGC 2 cut(s) 182, 195
Kpn2I TCCGGA 1 cut(s) 306
KpnI GGTACC 1 cut(s) 402
KroI GCCGGC 2 cut(s) 49, 178
KroNI GCCGGC 2 cut(s) 51, 180
Ksp22I TGATCA 1 cut(s) 847
Kzo9I GATC 4 cut(s) 219, 793, 847, 1051
LguI GCTCTTC 1 cut(s) 691
LmnI GCTCC 4 cut(s) 20, 31, 569, 942
Lsp1109I GCAGC 9 cut(s) 58, 82, 181, 187, 196, 352, 355, 700, 1048
LweI GCATC 3 cut(s) 90, 452, 820
MaeI CTAG 1 cut(s) 884
MaeII ACGT 2 cut(s) 389, 837
MaeIII GTNAC 2 cut(s) 514, 838
MalI GATC 4 cut(s) 221, 795, 849, 1053
MboI GATC 4 cut(s) 219, 793, 847, 1051
MboII GAAGA 3 cut(s) 257, 678, 965
MflI RGATCY 1 cut(s) 1051
MhlI GDGCHC 1 cut(s) 145
MluCI AATT 2 cut(s) 702, 976
MmeI TCCRAC 2 cut(s) 799, 1027
MnlI CCTC 7 cut(s) 117, 123, 196, 277, 325, 949, 1093
MroI TCCGGA 1 cut(s) 306
MroNI GCCGGC 2 cut(s) 49, 178
MseI TTAA 6 cut(s) 357, 543, 624, 894, 971, 1156
MslI CAYNNNNRTG 1 cut(s) 98
MspA1I CMGCKG 1 cut(s) 713
MspI CCGG 7 cut(s) 12, 18, 50, 179, 279, 307, 597
MspR9I CCNGG 3 cut(s) 12, 125, 774
MvaI CCWGG 2 cut(s) 125, 774
MwoI GCNNNNNNNGC 9 cut(s) 55, 109, 125, 172, 175, 181, 184, 706, 956
NaeI GCCGGC 2 cut(s) 51, 180
NciI CCSGG 1 cut(s) 12
NdeII GATC 4 cut(s) 219, 793, 847, 1051
NgoMIV GCCGGC 2 cut(s) 49, 178
NlaIII CATG 5 cut(s) 97, 158, 564, 700, 893
NlaIV GGNNCC 9 cut(s) 16, 27, 143, 144, 162, 400, 419, 571, 944
NmuCI GTSAC 1 cut(s) 514
NspI RCATGY 1 cut(s) 158
NspV TTCGAA 1 cut(s) 749
PciSI GCTCTTC 1 cut(s) 691
PcsI WCGNNNNNNNCGW 1 cut(s) 697
PdiI GCCGGC 2 cut(s) 51, 180
PflFI GACNNNGTC 1 cut(s) 203
Psp1406I AACGTT 1 cut(s) 837
Psp6I CCWGG 2 cut(s) 123, 772
PspFI CCCAGC 4 cut(s) 54, 84, 129, 728
PspGI CCWGG 2 cut(s) 123, 772
PspN4I GGNNCC 9 cut(s) 16, 27, 143, 144, 162, 400, 419, 571, 944
PspOMI GGGCCC 1 cut(s) 141
PstI CTGCAG 2 cut(s) 373, 451
PsuI RGATCY 1 cut(s) 1051
PsyI GACNNNGTC 1 cut(s) 203
PvuII CAGCTG 1 cut(s) 713
RsaI GTAC 4 cut(s) 62, 236, 392, 400
RsaNI GTAC 4 cut(s) 61, 235, 391, 399
RseI CAYNNNNRTG 1 cut(s) 98
SapI GCTCTTC 1 cut(s) 691
SaqAI TTAA 6 cut(s) 357, 543, 624, 894, 971, 1156
Sau3AI GATC 4 cut(s) 219, 793, 847, 1051
ScaI AGTACT 1 cut(s) 236
ScrFI CCNGG 3 cut(s) 12, 125, 774
SduI GDGCHC 1 cut(s) 145
SfaNI GCATC 3 cut(s) 90, 452, 820
SfcI CTRYAG 2 cut(s) 369, 447
SfuI TTCGAA 1 cut(s) 749
SgrAI CRCCGGYG 1 cut(s) 278
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 98
Sse9I AATT 2 cut(s) 702, 976
SspI AATATT 2 cut(s) 489, 746
SspMI CTAG 1 cut(s) 884
StyD4I CCNGG 3 cut(s) 10, 123, 772
StyI CCWWGG 2 cut(s) 573, 606
TaaI ACNGT 2 cut(s) 648, 862
TaiI ACGT 2 cut(s) 392, 840
TaqI TCGA 2 cut(s) 361, 749
TaqII GACCGA 2 cut(s) 677, 806
TasI AATT 2 cut(s) 702, 976
TatI WGTACW 1 cut(s) 234
TauI GCSGC 6 cut(s) 76, 83, 106, 169, 175, 603
Tru1I TTAA 6 cut(s) 357, 543, 624, 894, 971, 1156
Tru9I TTAA 6 cut(s) 357, 543, 624, 894, 971, 1156
TseFI GTSAC 1 cut(s) 514
TseI GCWGC 9 cut(s) 46, 70, 169, 175, 184, 365, 368, 713, 1036
Tsp45I GTSAC 1 cut(s) 514
TspDTI ATGAA 3 cut(s) 683, 747, 878
TspGWI ACGGA 1 cut(s) 18
Tth111I GACNNNGTC 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 205
XceI RCATGY 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 1067
XspI CTAG 1 cut(s) 884
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.