Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009787.1

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Forward (+)

26546 .. 29266

Gene Structure 2721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009787.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atgagcaccgtcgtcaacttgccggagaagcgacaagatcttgaccagggtcggatcccggagcaactgccggataagagtccgaagcttgatgatccacaaccgggagaggtcgacgaaactgtttttagccagtatggtgagctagttcatgttaagataccagcaggcaagcgatgtgggtttgttcagttcgcagactggagccgtgctgaagaggctttgcaaggattaaacaattctcagattggtggacaaaatatccgactttcttggggtcgcagtccttcaaacaagcagcaggctcaggcagatccaaaccaatggaatgctggctattatggatatgcaccaacccccgagggatatggatatgcccaagtatcccaagaccctaacatgtactatggagggtatcctgctggatatggcaattaccagcagtcacagcagcaacagcagcagcaagtgggttatagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

160

Amino Acids

17.87

Weight (kDa)

4.77

Isoelectric Point (pI)

63.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	114
AclWI	GGATC	4 cut(s)	49, 62, 89, 308
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	1 cut(s)	404
AfiI	CCNNNNNNNGG	1 cut(s)	104
AflIII	ACRYGT	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	291
AjnI	CCWGG	1 cut(s)	45
AluBI	AGCT	2 cut(s)	88, 145
AluI	AGCT	2 cut(s)	88, 145
Alw21I	GWGCWC	1 cut(s)	8
AlwI	GGATC	4 cut(s)	49, 62, 89, 308
Ama87I	CYCGRG	1 cut(s)	359
ApeKI	GCWGC	4 cut(s)	298, 451, 460, 463
AsuC2I	CCSGG	2 cut(s)	59, 105
AsuHPI	GGTGA	1 cut(s)	152
AvaI	CYCGRG	1 cut(s)	359
BamHI	GGATCC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	4 cut(s)	310, 463, 472, 475
BceAI	ACGGC	1 cut(s)	192
BciT130I	CCWGG	1 cut(s)	47
BciVI	GTATCC	2 cut(s)	394, 426
BcnI	CCSGG	2 cut(s)	59, 105
BfaI	CTAG	1 cut(s)	146
BfuI	GTATCC	2 cut(s)	394, 426
BglII	AGATCT	1 cut(s)	37
BisI	GCNGC	4 cut(s)	299, 452, 461, 464
BlsI	GCNGC	4 cut(s)	300, 453, 462, 465
Bme1390I	CCNGG	3 cut(s)	47, 59, 105
BmeT110I	CYCGRG	1 cut(s)	359
BmiI	GGNNCC	2 cut(s)	56, 206
BmrFI	CCNGG	3 cut(s)	47, 59, 105
BoxI	GACNNNNGTC	1 cut(s)	48
BpmI	CTGGAG	1 cut(s)	223
Bpu10I	CCTNAGC	1 cut(s)	306
BpuMI	CCSGG	2 cut(s)	59, 105
BsaJI	CCNNGG	2 cut(s)	46, 360
Bsc4I	CCNNNNNNNGG	1 cut(s)	104
Bse1I	ACTGG	2 cut(s)	133, 206
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	2 cut(s)	46, 360
BseLI	CCNNNNNNNGG	1 cut(s)	104
BseMII	CTCAG	2 cut(s)	257, 320
BseNI	ACTGG	2 cut(s)	133, 206
BseXI	GCAGC	4 cut(s)	310, 463, 472, 475
BsiHKAI	GWGCWC	1 cut(s)	8
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	4 cut(s)	23, 59, 71, 104
BslI	CCNNNNNNNGG	1 cut(s)	104
BsmI	GAATGC	1 cut(s)	334
BsoBI	CYCGRG	1 cut(s)	359
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp143I	GATC	4 cut(s)	37, 54, 94, 313
BspCNI	CTCAG	2 cut(s)	256, 319
BspLI	GGNNCC	2 cut(s)	56, 206
BspPI	GGATC	4 cut(s)	49, 62, 89, 308
BsrI	ACTGG	2 cut(s)	133, 206
BssECI	CCNNGG	2 cut(s)	46, 360
BssMI	GATC	4 cut(s)	37, 54, 94, 313
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	2 cut(s)	10, 124
Bst6I	CTCTTC	1 cut(s)	210
BstC8I	GCNNGC	4 cut(s)	169, 173, 303, 334
BstDEI	CTNAG	2 cut(s)	243, 306
BstKTI	GATC	4 cut(s)	40, 57, 97, 316
BstMBI	GATC	4 cut(s)	37, 54, 94, 313
BstMWI	GCNNNNNNNGC	5 cut(s)	28, 218, 448, 457, 460
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	1 cut(s)	403
BstPAI	GACNNNNGTC	1 cut(s)	48
BstSCI	CCNGG	3 cut(s)	45, 57, 103
BstV1I	GCAGC	4 cut(s)	310, 463, 472, 475
BstX2I	RGATCY	3 cut(s)	37, 54, 313
BstXI	CCANNNNNNTGG	1 cut(s)	324
BstYI	RGATCY	3 cut(s)	37, 54, 313
BsuI	GTATCC	2 cut(s)	394, 426
BtgZI	GCGATG	1 cut(s)	190
Cac8I	GCNNGC	4 cut(s)	169, 173, 303, 334
Csp6I	GTAC	1 cut(s)	403
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	2 cut(s)	152, 400
CviJI	RGCY	7 cut(s)	88, 132, 145, 207, 221, 305, 336
CviKI_1	RGCY	7 cut(s)	88, 132, 145, 207, 221, 305, 336
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	2 cut(s)	243, 306
DpnI	GATC	4 cut(s)	39, 56, 96, 315
DpnII	GATC	4 cut(s)	37, 54, 94, 313
Eam1104I	CTCTTC	1 cut(s)	210
EarI	CTCTTC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	359
EcoRII	CCWGG	1 cut(s)	45
FaeI	CATG	2 cut(s)	155, 403
FatI	CATG	2 cut(s)	151, 399
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	299, 452, 461, 464
Fsp4HI	GCNGC	4 cut(s)	299, 452, 461, 464
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	4 cut(s)	299, 452, 461, 464
GsuI	CTGGAG	1 cut(s)	223
HapII	CCGG	4 cut(s)	23, 59, 71, 104
Hin1II	CATG	2 cut(s)	155, 403
HincII	GTYRAC	2 cut(s)	16, 115
HindII	GTYRAC	2 cut(s)	16, 115
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	4 cut(s)	23, 59, 71, 104
HphI	GGTGA	1 cut(s)	152
Hpy166II	GTNNAC	3 cut(s)	16, 115, 254
Hpy188I	TCNGA	4 cut(s)	54, 84, 246, 266
Hpy188III	TCNNGA	1 cut(s)	41
Hpy8I	GTNNAC	3 cut(s)	16, 115, 254
Hpy99I	CGWCG	2 cut(s)	14, 119
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	2 cut(s)	10, 124
HpyCH4V	TGCA	2 cut(s)	226, 350
HpyF10VI	GCNNNNNNNGC	5 cut(s)	28, 218, 448, 457, 460
HpyF3I	CTNAG	2 cut(s)	243, 306
Hsp92II	CATG	2 cut(s)	155, 403
Kzo9I	GATC	4 cut(s)	37, 54, 94, 313
LmnI	GCTCC	2 cut(s)	61, 204
Lsp1109I	GCAGC	4 cut(s)	310, 463, 472, 475
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	1 cut(s)	444
MalI	GATC	4 cut(s)	39, 56, 96, 315
MboI	GATC	4 cut(s)	37, 54, 94, 313
MboII	GAAGA	1 cut(s)	227
MflI	RGATCY	3 cut(s)	37, 54, 313
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	2 cut(s)	238, 433
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	2 cut(s)	32, 289
MnlI	CCTC	4 cut(s)	103, 211, 355, 404
MseI	TTAA	2 cut(s)	156, 233
MspI	CCGG	4 cut(s)	23, 59, 71, 104
MspR9I	CCNGG	3 cut(s)	47, 59, 105
Mva1269I	GAATGC	1 cut(s)	334
MvaI	CCWGG	1 cut(s)	47
MwoI	GCNNNNNNNGC	5 cut(s)	28, 218, 448, 457, 460
NciI	CCSGG	2 cut(s)	59, 105
NdeII	GATC	4 cut(s)	37, 54, 94, 313
NlaIII	CATG	2 cut(s)	155, 403
NlaIV	GGNNCC	2 cut(s)	56, 206
NmuCI	GTSAC	1 cut(s)	444
NspI	RCATGY	1 cut(s)	403
PciI	ACATGT	1 cut(s)	399
PctI	GAATGC	1 cut(s)	334
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	4 cut(s)	300, 453, 462, 465
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PscI	ACATGT	1 cut(s)	399
PshAI	GACNNNNGTC	1 cut(s)	48
Psp6I	CCWGG	1 cut(s)	45
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	56, 206
PsuI	RGATCY	3 cut(s)	37, 54, 313
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SalI	GTCGAC	1 cut(s)	113
SaqAI	TTAA	2 cut(s)	156, 233
SatI	GCNGC	4 cut(s)	299, 452, 461, 464
Sau3AI	GATC	4 cut(s)	37, 54, 94, 313
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	3 cut(s)	47, 59, 105
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	3 cut(s)	90, 114, 147
Sse9I	AATT	2 cut(s)	238, 433
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	3 cut(s)	45, 57, 103
TaaI	ACNGT	2 cut(s)	10, 124
TaqI	TCGA	1 cut(s)	114
TasI	AATT	2 cut(s)	238, 433
TatI	WGTACW	1 cut(s)	402
Tru1I	TTAA	2 cut(s)	156, 233
Tru9I	TTAA	2 cut(s)	156, 233
TseFI	GTSAC	1 cut(s)	444
TseI	GCWGC	4 cut(s)	298, 451, 460, 463
Tsp45I	GTSAC	1 cut(s)	444
TspDTI	ATGAA	1 cut(s)	140
XceI	RCATGY	1 cut(s)	403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	114
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.