Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009787.1

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Forward (+)

16287 .. 19668

Gene Structure 3382 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009787.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

atgatgcaacccggctccggtctggctccgtcgcaaatgggccagcagccggcccagcagtacggccagcagccgcccgccgcccagccctacatgatgatgccgcctccgcctcccgccgtccaggcccagccgatgtgggccccgcagtcgcacgtggccccgccgcagccgcagccggcgcagcccaccagcgccgacgaggtccgcacgctctggatcggcgacttgcagtactggatggaagagacctatcttttcagtatcttcgccaacaccggcgaggttgttagtgtgaaagtcatccggaataagcaaactactcaatcagagggctatgggtttattgagtttgttaatcgagctgctgcagaaagagtgcttcagacgtacaatggtacccctatgccaaatgggggccagcctttcagattgaactgggcatctgcaggggagaagcgttcggatgatacgcctgattatacaatatttgtgggcgacttggctgtggatgtgacagattatatgctacaagagatatttaaggctcgctatccatcatgcaagggagccaaggttgttattgacagacttaccggccgcaccaagggatatgggtttgttaagtttggagatgagagtgaacagttgcgtgcaatgactgagatgaatggagttgtttgctcttcacggcccatgcgaattgggcctgctgcaaacaaaaatgctgggggtaatcagcaatattcgaaagcttcatatcagagttctccaggtgcaaagaatgagactgatcccaataatacaactatatttgttggaaatctggatgccaacgttactgatgatcatttgagaacagtttttagccagtatggtgagctagttcatgttaagataccagcaggcaagcgatgtgggtttgttcagttcgcagacaggagccgtgctgaagaggctttgcaaggattaaacaattctcagattggtggacaaaatatccgactttcttggggtcgcagtccttcaaacaagcagcaggctcaggcagatcctaaccaatggaatgctggctattatggatatgcaccaacccccgagggatatggatatgcccaagtatcccaagaccctaacatgtactatggagggtatcctgctggatatggcaattaccagcagtcacagcagcaacagcagcagcaagtgggttatagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

406

Amino Acids

44.75

Weight (kDa)

6.01

Isoelectric Point (pI)

56.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	398
AccB1I	GGYRCC	1 cut(s)	398
AccIII	TCCGGA	1 cut(s)	306
AclI	AACGTT	1 cut(s)	837
AclWI	GGATC	3 cut(s)	227, 788, 1046
AcoI	YGGCCR	2 cut(s)	64, 598
AcuI	CTGAAG	2 cut(s)	368, 972
AcvI	CACGTG	1 cut(s)	157
AfaI	GTAC	5 cut(s)	62, 236, 392, 400, 1142
AfiI	CCNNNNNNNGG	4 cut(s)	17, 49, 416, 607
AflIII	ACRYGT	1 cut(s)	1137
AgsI	TTSAA	2 cut(s)	436, 1029
AjnI	CCWGG	2 cut(s)	123, 772
AluBI	AGCT	3 cut(s)	365, 755, 883
AluI	AGCT	3 cut(s)	365, 755, 883
Alw26I	GTCTC	2 cut(s)	242, 782
AlwI	GGATC	3 cut(s)	227, 788, 1046
Ama87I	CYCGRG	1 cut(s)	1097
Aor13HI	TCCGGA	1 cut(s)	306
ApaI	GGGCCC	1 cut(s)	145
Asp718I	GGTACC	1 cut(s)	398
AspLEI	GCGC	2 cut(s)	184, 197
AsuC2I	CCSGG	1 cut(s)	12
AsuHPI	GGTGA	1 cut(s)	890
AsuII	TTCGAA	1 cut(s)	749
AvaI	CYCGRG	1 cut(s)	1097
AvaII	GGWCC	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	145
BaeI	ACNNNNGTAYC	2 cut(s)	382, 415
BanI	GGYRCC	1 cut(s)	398
BanII	GRGCYC	1 cut(s)	145
BbrPI	CACGTG	1 cut(s)	157
BccI	CCATC	2 cut(s)	235, 565
BceAI	ACGGC	4 cut(s)	79, 104, 707, 930
BciT130I	CCWGG	2 cut(s)	125, 774
BciVI	GTATCC	2 cut(s)	1132, 1164
BclI	TGATCA	1 cut(s)	847
BcnI	CCSGG	1 cut(s)	12
BcoDI	GTCTC	2 cut(s)	242, 782
BfaI	CTAG	1 cut(s)	884
BfmI	CTRYAG	2 cut(s)	369, 447
BfoI	RGCGCY	1 cut(s)	198
BfuI	GTATCC	2 cut(s)	1132, 1164
BglI	GCCNNNNNGGC	1 cut(s)	125
BmcAI	AGTACT	1 cut(s)	236
Bme1390I	CCNGG	3 cut(s)	12, 125, 774
Bme18I	GGWCC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	1097
BmiI	GGNNCC	9 cut(s)	16, 27, 143, 144, 162, 400, 419, 571, 944
BmrFI	CCNGG	3 cut(s)	12, 125, 774
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	3 cut(s)	90, 452, 820
BmuI	ACTGGG	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	756
Bpu10I	CCTNAGC	1 cut(s)	1044
Bpu14I	TTCGAA	1 cut(s)	749
BpuMI	CCSGG	1 cut(s)	12
BsaAI	YACGTR	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	242
BsaJI	CCNNGG	3 cut(s)	573, 606, 1098
BsaWI	WCCGGW	2 cut(s)	17, 306
BsaXI	ACNNNNNCTCC	2 cut(s)	561, 591
Bsc4I	CCNNNNNNNGG	4 cut(s)	17, 49, 416, 607
Bse118I	RCCGGY	4 cut(s)	49, 178, 278, 596
Bse1I	ACTGG	3 cut(s)	242, 443, 871
Bse3DI	GCAATG	1 cut(s)	663
BseAI	TCCGGA	1 cut(s)	306
BseBI	CCWGG	2 cut(s)	125, 774
BseDI	CCNNGG	3 cut(s)	573, 606, 1098
BseGI	GGATG	5 cut(s)	246, 303, 472, 517, 835
BseLI	CCNNNNNNNGG	4 cut(s)	17, 49, 416, 607
BseMI	GCAATG	1 cut(s)	663
BseMII	CTCAG	3 cut(s)	654, 995, 1058
BseNI	ACTGG	3 cut(s)	242, 443, 871
BseSI	GKGCMC	1 cut(s)	145
BseX3I	CGGCCG	1 cut(s)	598
BseYI	CCCAGC	4 cut(s)	54, 84, 129, 728
Bsh1285I	CGRYCG	1 cut(s)	601
BshNI	GGYRCC	1 cut(s)	398
BsiEI	CGRYCG	1 cut(s)	601
BsiHKCI	CYCGRG	1 cut(s)	1097
BsiSI	CCGG	7 cut(s)	12, 18, 50, 179, 279, 307, 597
BslI	CCNNNNNNNGG	4 cut(s)	17, 49, 416, 607
BsmAI	GTCTC	2 cut(s)	242, 782
BsmI	GAATGC	1 cut(s)	1072
Bso31I	GGTCTC	1 cut(s)	242
BsoBI	CYCGRG	1 cut(s)	1097
Bsp119I	TTCGAA	1 cut(s)	749
Bsp120I	GGGCCC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	145
Bsp13I	TCCGGA	1 cut(s)	306
Bsp143I	GATC	4 cut(s)	219, 793, 847, 1051
BspCNI	CTCAG	3 cut(s)	655, 994, 1057
BspEI	TCCGGA	1 cut(s)	306
BspLI	GGNNCC	9 cut(s)	16, 27, 143, 144, 162, 400, 419, 571, 944
BspMAI	CTGCAG	2 cut(s)	373, 451
BspPI	GGATC	3 cut(s)	227, 788, 1046
BspQI	GCTCTTC	1 cut(s)	691
BspT104I	TTCGAA	1 cut(s)	749
BspT107I	GGYRCC	1 cut(s)	398
BspTNI	GGTCTC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	663
BsrFI	RCCGGY	4 cut(s)	49, 178, 278, 596
BsrI	ACTGG	3 cut(s)	242, 443, 871
BssAI	RCCGGY	4 cut(s)	49, 178, 278, 596
BssECI	CCNNGG	3 cut(s)	573, 606, 1098
BssMI	GATC	4 cut(s)	219, 793, 847, 1051
BssT1I	CCWWGG	2 cut(s)	573, 606
Bst2UI	CCWGG	2 cut(s)	125, 774
Bst4CI	ACNGT	2 cut(s)	648, 862
Bst6I	CTCTTC	3 cut(s)	240, 691, 948
BstBAI	YACGTR	1 cut(s)	157
BstBI	TTCGAA	1 cut(s)	749
BstDEI	CTNAG	3 cut(s)	663, 981, 1044
BstF5I	GGATG	5 cut(s)	246, 303, 472, 517, 835
BstH2I	RGCGCY	1 cut(s)	198
BstHHI	GCGC	2 cut(s)	184, 197
BstKTI	GATC	4 cut(s)	222, 796, 850, 1054
BstMAI	GTCTC	2 cut(s)	242, 782
BstMBI	GATC	4 cut(s)	219, 793, 847, 1051
BstMCI	CGRYCG	1 cut(s)	601
BstNI	CCWGG	2 cut(s)	125, 774
BstNSI	RCATGY	1 cut(s)	1141
BstSCI	CCNGG	3 cut(s)	10, 123, 772
BstSFI	CTRYAG	2 cut(s)	369, 447
BstSLI	GKGCMC	1 cut(s)	145
BstX2I	RGATCY	1 cut(s)	1051
BstYI	RGATCY	1 cut(s)	1051
BstZI	CGGCCG	1 cut(s)	598
BsuI	GTATCC	2 cut(s)	1132, 1164
BtgZI	GCGATG	1 cut(s)	928
BtsCI	GGATG	5 cut(s)	246, 303, 472, 517, 835
CfoI	GCGC	2 cut(s)	184, 197
Cfr10I	RCCGGY	4 cut(s)	49, 178, 278, 596
Csp6I	GTAC	5 cut(s)	61, 235, 391, 399, 1141
CspCI	CAANNNNNGTGG	4 cut(s)	474, 509, 898, 933
CviAII	CATG	5 cut(s)	94, 561, 697, 890, 1138
CviQI	GTAC	5 cut(s)	61, 235, 391, 399, 1141
DdeI	CTNAG	3 cut(s)	663, 981, 1044
DpnI	GATC	4 cut(s)	221, 795, 849, 1053
DpnII	GATC	4 cut(s)	219, 793, 847, 1051
EaeI	YGGCCR	2 cut(s)	64, 598
EagI	CGGCCG	1 cut(s)	598
Eam1104I	CTCTTC	3 cut(s)	240, 691, 948
EarI	CTCTTC	3 cut(s)	240, 691, 948
EciI	GGCGGA	1 cut(s)	99
EclXI	CGGCCG	1 cut(s)	598
Eco130I	CCWWGG	2 cut(s)	573, 606
Eco24I	GRGCYC	1 cut(s)	145
Eco31I	GGTCTC	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	205
Eco52I	CGGCCG	1 cut(s)	598
Eco57I	CTGAAG	2 cut(s)	368, 972
Eco72I	CACGTG	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	1097
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	123, 772
EcoT14I	CCWWGG	2 cut(s)	573, 606
EcoT38I	GRGCYC	1 cut(s)	145
ErhI	CCWWGG	2 cut(s)	573, 606
FaeI	CATG	5 cut(s)	97, 564, 700, 893, 1141
FatI	CATG	5 cut(s)	93, 560, 696, 889, 1137
FauI	CCCGC	4 cut(s)	85, 124, 153, 171
FbaI	TGATCA	1 cut(s)	847
FokI	GGATG	5 cut(s)	253, 290, 479, 524, 842
FriOI	GRGCYC	1 cut(s)	145
FspBI	CTAG	1 cut(s)	884
GlaI	GCGC	2 cut(s)	183, 196
GsaI	CCCAGC	4 cut(s)	58, 88, 133, 732
GsuI	CTGGAG	1 cut(s)	756
HaeII	RGCGCY	1 cut(s)	198
HapII	CCGG	7 cut(s)	12, 18, 50, 179, 279, 307, 597
HhaI	GCGC	2 cut(s)	184, 197
Hin1II	CATG	5 cut(s)	97, 564, 700, 893, 1141
Hin6I	GCGC	2 cut(s)	182, 195
HinP1I	GCGC	2 cut(s)	182, 195
HindIII	AAGCTT	1 cut(s)	753
HpaII	CCGG	7 cut(s)	12, 18, 50, 179, 279, 307, 597
HphI	GGTGA	1 cut(s)	890
Hpy166II	GTNNAC	2 cut(s)	644, 992
Hpy188I	TCNGA	7 cut(s)	331, 387, 431, 466, 765, 984, 1004
Hpy188III	TCNNGA	3 cut(s)	217, 307, 827
Hpy8I	GTNNAC	2 cut(s)	644, 992
Hpy99I	CGWCG	2 cut(s)	34, 203
HpyAV	CCTTC	1 cut(s)	1035
HpyCH4III	ACNGT	2 cut(s)	648, 862
HpyCH4IV	ACGT	3 cut(s)	156, 389, 837
HpyF3I	CTNAG	3 cut(s)	663, 981, 1044
HpySE526I	ACGT	3 cut(s)	156, 389, 837
Hsp92II	CATG	5 cut(s)	97, 564, 700, 893, 1141
HspAI	GCGC	2 cut(s)	182, 195
Kpn2I	TCCGGA	1 cut(s)	306
KpnI	GGTACC	1 cut(s)	402
KroI	GCCGGC	2 cut(s)	49, 178
KroNI	GCCGGC	2 cut(s)	51, 180
Ksp22I	TGATCA	1 cut(s)	847
Kzo9I	GATC	4 cut(s)	219, 793, 847, 1051
LguI	GCTCTTC	1 cut(s)	691
LmnI	GCTCC	4 cut(s)	20, 31, 569, 942
LweI	GCATC	3 cut(s)	90, 452, 820
MaeI	CTAG	1 cut(s)	884
MaeII	ACGT	3 cut(s)	156, 389, 837
MaeIII	GTNAC	3 cut(s)	514, 838, 1182
MalI	GATC	4 cut(s)	221, 795, 849, 1053
MboI	GATC	4 cut(s)	219, 793, 847, 1051
MboII	GAAGA	4 cut(s)	257, 259, 678, 965
MflI	RGATCY	1 cut(s)	1051
MhlI	GDGCHC	1 cut(s)	145
MluCI	AATT	3 cut(s)	702, 976, 1171
MmeI	TCCRAC	2 cut(s)	799, 1027
MnlI	CCTC	8 cut(s)	117, 123, 196, 277, 325, 949, 1093, 1142
MroI	TCCGGA	1 cut(s)	306
MroNI	GCCGGC	2 cut(s)	49, 178
MseI	TTAA	5 cut(s)	357, 543, 624, 894, 971
MslI	CAYNNNNRTG	1 cut(s)	98
MspI	CCGG	7 cut(s)	12, 18, 50, 179, 279, 307, 597
MspR9I	CCNGG	3 cut(s)	12, 125, 774
Mva1269I	GAATGC	1 cut(s)	1072
MvaI	CCWGG	2 cut(s)	125, 774
NaeI	GCCGGC	2 cut(s)	51, 180
NciI	CCSGG	1 cut(s)	12
NdeII	GATC	4 cut(s)	219, 793, 847, 1051
NgoMIV	GCCGGC	2 cut(s)	49, 178
NlaIII	CATG	5 cut(s)	97, 564, 700, 893, 1141
NlaIV	GGNNCC	9 cut(s)	16, 27, 143, 144, 162, 400, 419, 571, 944
NmuCI	GTSAC	2 cut(s)	514, 1182
NspI	RCATGY	1 cut(s)	1141
NspV	TTCGAA	1 cut(s)	749
PciI	ACATGT	1 cut(s)	1137
PciSI	GCTCTTC	1 cut(s)	691
PcsI	WCGNNNNNNNCGW	1 cut(s)	697
PctI	GAATGC	1 cut(s)	1072
PdiI	GCCGGC	2 cut(s)	51, 180
PflFI	GACNNNGTC	1 cut(s)	203
PmaCI	CACGTG	1 cut(s)	157
PmlI	CACGTG	1 cut(s)	157
Ppu21I	YACGTR	1 cut(s)	157
PscI	ACATGT	1 cut(s)	1137
Psp1406I	AACGTT	1 cut(s)	837
Psp6I	CCWGG	2 cut(s)	123, 772
PspCI	CACGTG	1 cut(s)	157
PspFI	CCCAGC	4 cut(s)	54, 84, 129, 728
PspGI	CCWGG	2 cut(s)	123, 772
PspN4I	GGNNCC	9 cut(s)	16, 27, 143, 144, 162, 400, 419, 571, 944
PspOMI	GGGCCC	1 cut(s)	141
PstI	CTGCAG	2 cut(s)	373, 451
PsuI	RGATCY	1 cut(s)	1051
PsyI	GACNNNGTC	1 cut(s)	203
RsaI	GTAC	5 cut(s)	62, 236, 392, 400, 1142
RsaNI	GTAC	5 cut(s)	61, 235, 391, 399, 1141
RseI	CAYNNNNRTG	1 cut(s)	98
SapI	GCTCTTC	1 cut(s)	691
SaqAI	TTAA	5 cut(s)	357, 543, 624, 894, 971
Sau3AI	GATC	4 cut(s)	219, 793, 847, 1051
ScaI	AGTACT	1 cut(s)	236
ScrFI	CCNGG	3 cut(s)	12, 125, 774
SduI	GDGCHC	1 cut(s)	145
SfaNI	GCATC	3 cut(s)	90, 452, 820
SfcI	CTRYAG	2 cut(s)	369, 447
SfuI	TTCGAA	1 cut(s)	749
SgrAI	CRCCGGYG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	205
SmiMI	CAYNNNNRTG	1 cut(s)	98
Sse9I	AATT	3 cut(s)	702, 976, 1171
SspI	AATATT	2 cut(s)	489, 746
SspMI	CTAG	1 cut(s)	884
StyD4I	CCNGG	3 cut(s)	10, 123, 772
StyI	CCWWGG	2 cut(s)	573, 606
TaaI	ACNGT	2 cut(s)	648, 862
TaiI	ACGT	3 cut(s)	159, 392, 840
TaqI	TCGA	2 cut(s)	361, 749
TasI	AATT	3 cut(s)	702, 976, 1171
TatI	WGTACW	2 cut(s)	234, 1140
TauI	GCSGC	6 cut(s)	76, 83, 106, 169, 175, 603
Tru1I	TTAA	5 cut(s)	357, 543, 624, 894, 971
Tru9I	TTAA	5 cut(s)	357, 543, 624, 894, 971
TseFI	GTSAC	2 cut(s)	514, 1182
Tsp45I	GTSAC	2 cut(s)	514, 1182
TspDTI	ATGAA	3 cut(s)	683, 747, 878
TspGWI	ACGGA	1 cut(s)	18
Tth111I	GACNNNGTC	1 cut(s)	203
VpaK11BI	GGWCC	1 cut(s)	205
XceI	RCATGY	1 cut(s)	1141
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1067
XspI	CTAG	1 cut(s)	884
ZrmI	AGTACT	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.