Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Reverse (-)

1175337 .. 1179005

Gene Structure 3669 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g02320.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGATGCAACCAGGCTCCGGCGTGGCTCCGTCGGCAATGGTCCAGCAGTACGGCCAGCAGCAGCAGCAGCCGCCCCCCGCCGCTGCCCAGCCCTACATGATGATGCCGCCGCCGCTCCCCACCGTGCAGCCTCCTCCGGCGATGTGGGCCCCTCAGTCGCACGTGGCCCCACCTCCACCTCAGGCCCAGCCCGCCAGCGCCGACGAGGTCCGCACTCTCTGGATCGGCGACTTGCAGTACTGGATGGAAGAGACCTATCTTTTCAATATCTTCGCCAGCACCGGCGAGGTTGTTAATGTGAAAGTTATCCGCAATAAGCAAACTAACCAATCCGAGGGCTACGGGTTTATTGAGTTTGTTAATAGAGCTGCGGCAGAAAGAGTGCTTCAGACTTACAATGGTACCCCTATGCCAAATTGTGGCCAGCCTTTCAGATTGAACTGGGCATCTGCAGGGGAGAAGCGTTCTGATGATACGCCTGATTATACAATATTTGTTGGGGACTTGGCTGTGGATGTGACAGATTATATGCTACAAGAGATATTTAAGACCCGTTATCCATCTTGCAAGGGAGCTAAGGTTGTTATTGACAGACTTACTGGCCGCACCAAGGGATATGGGTTTGTTAAGTTTGGAGATGAGAGTGAACAGTTGCGTGCAATGACTGAGATGAATGGAGTTGTTTGCTCTTCAAGAGCTATGCGAATTGGGCCAGCTGCAAACAAAAATGCTGGGGGCAATCAGCAATATTCAAAAGCTTCATATCAGGGTTCTCCAGGTGCAAAGAATGAGACCGATCCCAATAACACAACTATATTTGTTGGGAATCTGGATGCTAATGTTACCGATGACCATTTGAGGACAGTTTTTAGCCAGTATGGTGAGCTAGTACATGTTAAGATACCAGCAGGAAAGCGATGTGGGTTTGTTCAATTTGCAGACAGGAGTCGTGCTGAAGAGGCTTTGCAAGGATTAAACAATTCCCCAATTGGTGGACAAAATATCCGACTTTCTTGGGGTCGCAGTCCTTCGAACAAGCAGCAGGCTCAGGCAGATCCAAACCAATGGAATGCTGGCTATTATGGATATGCACCAACACCTGAGGGATATGGATATCCCCAAGTGTCCCAAGACCCTAACATGTACTATGGAGGCTACCCTGCTGGATACGGGAATTACCAGCAGCCGCAGCAGCAGCAACAGCAGCAGCAGCAGCAAGTGGGTTATAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

411

Amino Acids

45.25

Weight (kDa)

6.01

Isoelectric Point (pI)

56.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	73 - 139	5.9e-13	RNA recognition motif
RRM_1	PF00076	164 - 233	3.7e-13	RNA recognition motif
RRM_5	PF13893	250 - 341	1e-07	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
RRM_1	PF00076	272 - 336	5.4e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	401
AccB7I	CCANNNNNTGG	2 cut(s)	419, 992
AccBSI	CCGCTC	1 cut(s)	115
AclWI	GGATC	3 cut(s)	230, 791, 1049
AcoI	YGGCCR	3 cut(s)	52, 421, 601
AcuI	CTGAAG	2 cut(s)	371, 975
AcvI	CACGTG	1 cut(s)	163
AfaI	GTAC	5 cut(s)	50, 239, 403, 891, 1145
AfiI	CCNNNNNNNGG	5 cut(s)	17, 334, 419, 610, 992
AflIII	ACRYGT	2 cut(s)	892, 1140
AgsI	TTSAA	5 cut(s)	265, 439, 693, 753, 932
AjnI	CCWGG	2 cut(s)	10, 775
AluBI	AGCT	7 cut(s)	368, 575, 698, 716, 758, 886, 1230
AluI	AGCT	7 cut(s)	368, 575, 698, 716, 758, 886, 1230
Alw26I	GTCTC	2 cut(s)	245, 785
AlwI	GGATC	3 cut(s)	230, 791, 1049
AoxI	GGCC	7 cut(s)	52, 147, 165, 183, 421, 601, 710
ApaI	GGGCCC	1 cut(s)	151
Asp718I	GGTACC	1 cut(s)	401
AspLEI	GCGC	1 cut(s)	200
AspS9I	GGNCC	7 cut(s)	40, 147, 148, 166, 184, 208, 710
AsuHPI	GGTGA	1 cut(s)	893
AsuII	TTCGAA	1 cut(s)	1031
AvaII	GGWCC	2 cut(s)	40, 208
AxyI	CCTNAGG	2 cut(s)	180, 1101
BaeGI	GKGCMC	1 cut(s)	151
BaeI	ACNNNNGTAYC	2 cut(s)	385, 418
BalI	TGGCCA	1 cut(s)	423
BanI	GGYRCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	151
BbrPI	CACGTG	1 cut(s)	163
BccI	CCATC	2 cut(s)	238, 568
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	12, 777
BciVI	GTATCC	1 cut(s)	1160
BcoDI	GTCTC	2 cut(s)	245, 785
BfaI	CTAG	1 cut(s)	887
BfmI	CTRYAG	1 cut(s)	450
BfoI	RGCGCY	1 cut(s)	201
BfuI	GTATCC	1 cut(s)	1160
BmcAI	AGTACT	1 cut(s)	239
Bme1390I	CCNGG	2 cut(s)	12, 777
Bme18I	GGWCC	2 cut(s)	40, 208
BmgT120I	GGNCC	7 cut(s)	40, 147, 148, 166, 184, 208, 710
BmiI	GGNNCC	6 cut(s)	16, 27, 149, 150, 168, 403
BmrFI	CCNGG	2 cut(s)	12, 777
BmrI	ACTGGG	1 cut(s)	451
BmsI	GCATC	3 cut(s)	93, 455, 823
BmuI	ACTGGG	1 cut(s)	451
BoxI	GACNNNNGTC	1 cut(s)	945
BpmI	CTGGAG	1 cut(s)	759
Bpu10I	CCTNAGC	2 cut(s)	576, 1047
Bpu14I	TTCGAA	1 cut(s)	1031
BsaAI	YACGTR	1 cut(s)	163
BsaI	GGTCTC	2 cut(s)	245, 785
BsaJI	CCNNGG	2 cut(s)	333, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	564, 594
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 334, 419, 610, 992
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	4 cut(s)	245, 446, 604, 874
Bse21I	CCTNAGG	2 cut(s)	180, 1101
Bse3DI	GCAATG	2 cut(s)	42, 666
BseBI	CCWGG	2 cut(s)	12, 777
BseDI	CCNNGG	2 cut(s)	333, 609
BseGI	GGATG	3 cut(s)	249, 520, 838
BseLI	CCNNNNNNNGG	5 cut(s)	17, 334, 419, 610, 992
BseMI	GCAATG	2 cut(s)	42, 666
BseMII	CTCAG	5 cut(s)	167, 194, 657, 1061, 1092
BseNI	ACTGG	4 cut(s)	245, 446, 604, 874
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	151
BseYI	CCCAGC	3 cut(s)	87, 186, 731
BsgI	GTGCAG	1 cut(s)	146
BshFI	GGCC	7 cut(s)	54, 149, 167, 185, 423, 603, 712
BshNI	GGYRCC	1 cut(s)	401
BsiSI	CCGG	3 cut(s)	18, 137, 282
BslFI	GGGAC	2 cut(s)	515, 1111
BslI	CCNNNNNNNGG	5 cut(s)	17, 334, 419, 610, 992
BsmAI	GTCTC	2 cut(s)	245, 785
BsmFI	GGGAC	2 cut(s)	515, 1111
BsmI	GAATGC	1 cut(s)	1075
BsnI	GGCC	7 cut(s)	54, 149, 167, 185, 423, 603, 712
Bso31I	GGTCTC	2 cut(s)	245, 785
Bsp119I	TTCGAA	1 cut(s)	1031
Bsp120I	GGGCCC	1 cut(s)	147
Bsp1286I	GDGCHC	1 cut(s)	151
Bsp143I	GATC	3 cut(s)	222, 796, 1054
BspANI	GGCC	7 cut(s)	54, 149, 167, 185, 423, 603, 712
BspCNI	CTCAG	5 cut(s)	166, 193, 658, 1060, 1093
BspLI	GGNNCC	6 cut(s)	16, 27, 149, 150, 168, 403
BspMAI	CTGCAG	1 cut(s)	454
BspPI	GGATC	3 cut(s)	230, 791, 1049
BspQI	GCTCTTC	1 cut(s)	694
BspT104I	TTCGAA	1 cut(s)	1031
BspT107I	GGYRCC	1 cut(s)	401
BspTNI	GGTCTC	2 cut(s)	245, 785
BsrBI	CCGCTC	1 cut(s)	115
BsrDI	GCAATG	2 cut(s)	42, 666
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	4 cut(s)	245, 446, 604, 874
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	333, 609
BssMI	GATC	3 cut(s)	222, 796, 1054
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	2 cut(s)	12, 777
Bst4CI	ACNGT	3 cut(s)	124, 651, 865
Bst6I	CTCTTC	3 cut(s)	243, 694, 951
BstBAI	YACGTR	1 cut(s)	163
BstBI	TTCGAA	1 cut(s)	1031
BstC8I	GCNNGC	9 cut(s)	56, 192, 196, 277, 425, 657, 714, 1044, 1075
BstDEI	CTNAG	6 cut(s)	153, 180, 576, 666, 1047, 1101
BstF5I	GGATG	3 cut(s)	249, 520, 838
BstH2I	RGCGCY	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	200
BstKTI	GATC	3 cut(s)	225, 799, 1057
BstMAI	GTCTC	2 cut(s)	245, 785
BstMBI	GATC	3 cut(s)	222, 796, 1054
BstNI	CCWGG	2 cut(s)	12, 777
BstNSI	RCATGY	2 cut(s)	896, 1144
BstPAI	GACNNNNGTC	1 cut(s)	945
BstSCI	CCNGG	2 cut(s)	10, 775
BstSFI	CTRYAG	1 cut(s)	450
BstSLI	GKGCMC	1 cut(s)	151
BstX2I	RGATCY	1 cut(s)	1054
BstXI	CCANNNNNNTGG	1 cut(s)	1065
BstYI	RGATCY	1 cut(s)	1054
Bsu36I	CCTNAGG	2 cut(s)	180, 1101
BsuI	GTATCC	1 cut(s)	1160
BsuRI	GGCC	7 cut(s)	54, 149, 167, 185, 423, 603, 712
BtgZI	GCGATG	2 cut(s)	155, 931
BtsCI	GGATG	3 cut(s)	249, 520, 838
Cac8I	GCNNGC	9 cut(s)	56, 192, 196, 277, 425, 657, 714, 1044, 1075
CfoI	GCGC	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	7 cut(s)	40, 147, 148, 166, 184, 208, 710
Csp6I	GTAC	5 cut(s)	49, 238, 402, 890, 1144
CviAII	CATG	3 cut(s)	97, 893, 1141
CviQI	GTAC	5 cut(s)	49, 238, 402, 890, 1144
DdeI	CTNAG	6 cut(s)	153, 180, 576, 666, 1047, 1101
DpnI	GATC	3 cut(s)	224, 798, 1056
DpnII	GATC	3 cut(s)	222, 796, 1054
EaeI	YGGCCR	3 cut(s)	52, 421, 601
Eam1104I	CTCTTC	3 cut(s)	243, 694, 951
EarI	CTCTTC	3 cut(s)	243, 694, 951
Eco130I	CCWWGG	1 cut(s)	609
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	2 cut(s)	245, 785
Eco32I	GATATC	1 cut(s)	1115
Eco47I	GGWCC	2 cut(s)	40, 208
Eco57I	CTGAAG	2 cut(s)	371, 975
Eco72I	CACGTG	1 cut(s)	163
Eco81I	CCTNAGG	2 cut(s)	180, 1101
EcoO109I	RGGNCCY	1 cut(s)	148
EcoRII	CCWGG	2 cut(s)	10, 775
EcoRV	GATATC	1 cut(s)	1115
EcoT14I	CCWWGG	1 cut(s)	609
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	3 cut(s)	100, 896, 1144
FaqI	GGGAC	2 cut(s)	515, 1111
FatI	CATG	3 cut(s)	96, 892, 1140
FauI	CCCGC	2 cut(s)	85, 199
FokI	GGATG	3 cut(s)	256, 527, 845
FriOI	GRGCYC	1 cut(s)	151
FspBI	CTAG	1 cut(s)	887
GlaI	GCGC	1 cut(s)	199
GsaI	CCCAGC	3 cut(s)	91, 190, 735
GsuI	CTGGAG	1 cut(s)	759
HaeII	RGCGCY	1 cut(s)	201
HaeIII	GGCC	7 cut(s)	54, 149, 167, 185, 423, 603, 712
HapII	CCGG	3 cut(s)	18, 137, 282
HhaI	GCGC	1 cut(s)	200
Hin1II	CATG	3 cut(s)	100, 896, 1144
Hin6I	GCGC	1 cut(s)	198
HinP1I	GCGC	1 cut(s)	198
HindIII	AAGCTT	1 cut(s)	756
HinfI	GANTC	2 cut(s)	826, 946
HpaII	CCGG	3 cut(s)	18, 137, 282
HphI	GGTGA	1 cut(s)	893
Hpy166II	GTNNAC	2 cut(s)	647, 995
Hpy188I	TCNGA	5 cut(s)	334, 390, 434, 469, 1007
Hpy188III	TCNNGA	3 cut(s)	220, 693, 830
Hpy8I	GTNNAC	2 cut(s)	647, 995
Hpy99I	CGWCG	2 cut(s)	34, 206
HpyAV	CCTTC	1 cut(s)	1038
HpyCH4III	ACNGT	3 cut(s)	124, 651, 865
HpyCH4IV	ACGT	1 cut(s)	162
HpyF3I	CTNAG	6 cut(s)	153, 180, 576, 666, 1047, 1101
HpySE526I	ACGT	1 cut(s)	162
Hsp92II	CATG	3 cut(s)	100, 896, 1144
HspAI	GCGC	1 cut(s)	198
KpnI	GGTACC	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	222, 796, 1054
LguI	GCTCTTC	1 cut(s)	694
LmnI	GCTCC	4 cut(s)	20, 31, 120, 572
LweI	GCATC	3 cut(s)	93, 455, 823
MaeI	CTAG	1 cut(s)	887
MaeII	ACGT	1 cut(s)	162
MaeIII	GTNAC	2 cut(s)	517, 841
MalI	GATC	3 cut(s)	224, 798, 1056
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	3 cut(s)	222, 796, 1054
MboII	GAAGA	4 cut(s)	260, 262, 681, 968
MfeI	CAATTG	1 cut(s)	987
MflI	RGATCY	1 cut(s)	1054
MhlI	GDGCHC	1 cut(s)	151
MlsI	TGGCCA	1 cut(s)	423
MluCI	AATT	6 cut(s)	415, 705, 932, 979, 987, 1174
MluNI	TGGCCA	1 cut(s)	423
MlyI	GAGTC	1 cut(s)	955
MmeI	TCCRAC	1 cut(s)	1030
Mox20I	TGGCCA	1 cut(s)	423
MscI	TGGCCA	1 cut(s)	423
MseI	TTAA	6 cut(s)	294, 360, 546, 627, 897, 974
MslI	CAYNNNNRTG	1 cut(s)	101
Msp20I	TGGCCA	1 cut(s)	423
MspA1I	CMGCKG	2 cut(s)	83, 716
MspI	CCGG	3 cut(s)	18, 137, 282
MspR9I	CCNGG	2 cut(s)	12, 777
MunI	CAATTG	1 cut(s)	987
Mva1269I	GAATGC	1 cut(s)	1075
MvaI	CCWGG	2 cut(s)	12, 777
NdeII	GATC	3 cut(s)	222, 796, 1054
NlaIII	CATG	3 cut(s)	100, 896, 1144
NlaIV	GGNNCC	6 cut(s)	16, 27, 149, 150, 168, 403
NmuCI	GTSAC	1 cut(s)	517
NspI	RCATGY	2 cut(s)	896, 1144
NspV	TTCGAA	1 cut(s)	1031
PciI	ACATGT	2 cut(s)	892, 1140
PciSI	GCTCTTC	1 cut(s)	694
PctI	GAATGC	1 cut(s)	1075
PfeI	GAWTC	1 cut(s)	826
PflFI	GACNNNGTC	1 cut(s)	206
PflMI	CCANNNNNTGG	2 cut(s)	419, 992
PleI	GAGTC	1 cut(s)	954
PmaCI	CACGTG	1 cut(s)	163
PmlI	CACGTG	1 cut(s)	163
PpsI	GAGTC	1 cut(s)	954
Ppu21I	YACGTR	1 cut(s)	163
PscI	ACATGT	2 cut(s)	892, 1140
PshAI	GACNNNNGTC	1 cut(s)	945
Psp6I	CCWGG	2 cut(s)	10, 775
PspCI	CACGTG	1 cut(s)	163
PspFI	CCCAGC	3 cut(s)	87, 186, 731
PspGI	CCWGG	2 cut(s)	10, 775
PspN4I	GGNNCC	6 cut(s)	16, 27, 149, 150, 168, 403
PspOMI	GGGCCC	1 cut(s)	147
PspPI	GGNCC	7 cut(s)	40, 147, 148, 166, 184, 208, 710
PstI	CTGCAG	1 cut(s)	454
PsuI	RGATCY	1 cut(s)	1054
PsyI	GACNNNGTC	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	5 cut(s)	50, 239, 403, 891, 1145
RsaNI	GTAC	5 cut(s)	49, 238, 402, 890, 1144
RseI	CAYNNNNRTG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	694
SaqAI	TTAA	6 cut(s)	294, 360, 546, 627, 897, 974
Sau3AI	GATC	3 cut(s)	222, 796, 1054
Sau96I	GGNCC	7 cut(s)	40, 147, 148, 166, 184, 208, 710
ScaI	AGTACT	1 cut(s)	239
SchI	GAGTC	1 cut(s)	955
ScrFI	CCNGG	2 cut(s)	12, 777
SduI	GDGCHC	1 cut(s)	151
SfaNI	GCATC	3 cut(s)	93, 455, 823
SfcI	CTRYAG	1 cut(s)	450
SfuI	TTCGAA	1 cut(s)	1031
SgrAI	CRCCGGYG	1 cut(s)	281
SinI	GGWCC	2 cut(s)	40, 208
SmiMI	CAYNNNNRTG	1 cut(s)	101
Sse9I	AATT	6 cut(s)	415, 705, 932, 979, 987, 1174
SspI	AATATT	2 cut(s)	492, 749
SspMI	CTAG	1 cut(s)	887
StyD4I	CCNGG	2 cut(s)	10, 775
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	3 cut(s)	124, 651, 865
TaiI	ACGT	1 cut(s)	165
TaqI	TCGA	1 cut(s)	1031
TaqII	GACCGA	1 cut(s)	809
TasI	AATT	6 cut(s)	415, 705, 932, 979, 987, 1174
TatI	WGTACW	3 cut(s)	237, 889, 1143
TauI	GCSGC	8 cut(s)	73, 83, 109, 112, 115, 374, 606, 1189
TfiI	GAWTC	1 cut(s)	826
Tru1I	TTAA	6 cut(s)	294, 360, 546, 627, 897, 974
Tru9I	TTAA	6 cut(s)	294, 360, 546, 627, 897, 974
TseFI	GTSAC	1 cut(s)	517
Tsp45I	GTSAC	1 cut(s)	517
TspDTI	ATGAA	2 cut(s)	686, 750
TspGWI	ACGGA	1 cut(s)	18
Tth111I	GACNNNGTC	1 cut(s)	206
Van91I	CCANNNNNTGG	2 cut(s)	419, 992
VpaK11BI	GGWCC	2 cut(s)	40, 208
XceI	RCATGY	2 cut(s)	896, 1144
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1070
XspI	CTAG	1 cut(s)	887
ZrmI	AGTACT	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.