Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Forward (+)

2869593 .. 2871235

Gene Structure 1643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG041000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGTTCTTAAATACACAAACAATACAAGGAAGCACTGGGAAATATGCTTTTAGCGCGTGGCCTCACTTAGCTTCATATCAGAGTTCTCCAGGTGCAAAGAATAAGACCAATGCCAAGAACACAACTTATGGTGAGCTAGTACATGTTAAGACACCAGCAGGAGCCCTGCTGCAGAGGGCTTTGCAAGGATTAAACAATTCTCAGCTTGGGGAACAAAATATCCAACTTTCTTGGGGTTGCAGTCCTTCAAACAAGCAGCAGCAGGCTCAGGCAGATCCAAACCAATGGAATGCTGGCTATTATGGAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

103

Amino Acids

11.19

Weight (kDa)

9.17

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	56
AclWI	GGATC	1 cut(s)	269
AfaI	GTAC	1 cut(s)	141
AflIII	ACRYGT	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	249
AjnI	CCWGG	1 cut(s)	88
AloI	GAACNNNNNNTCC	2 cut(s)	204, 236
AluBI	AGCT	3 cut(s)	71, 136, 205
AluI	AGCT	3 cut(s)	71, 136, 205
Alw26I	GTCTC	1 cut(s)	300
AlwI	GGATC	1 cut(s)	269
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	169, 256, 259
AspLEI	GCGC	1 cut(s)	56
AsuHPI	GGTGA	1 cut(s)	143
BanII	GRGCYC	1 cut(s)	166
BbvI	GCAGC	3 cut(s)	156, 268, 271
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	300
BfaI	CTAG	2 cut(s)	137, 310
BfmI	CTRYAG	1 cut(s)	170
BisI	GCNGC	3 cut(s)	170, 257, 260
BlsI	GCNGC	3 cut(s)	171, 258, 261
Bme1390I	CCNGG	1 cut(s)	90
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	90
BmrI	ACTGGG	1 cut(s)	45
BmuI	ACTGGG	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	72
Bpu10I	CCTNAGC	1 cut(s)	267
Bse1I	ACTGG	1 cut(s)	40
BseBI	CCWGG	1 cut(s)	90
BseMII	CTCAG	2 cut(s)	215, 281
BseNI	ACTGG	1 cut(s)	40
BseXI	GCAGC	3 cut(s)	156, 268, 271
Bsh1236I	CGCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	61
BsmAI	GTCTC	1 cut(s)	300
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	61
Bsp1286I	GDGCHC	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	274
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	2 cut(s)	214, 280
BspFNI	CGCG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	163
BspMAI	CTGCAG	1 cut(s)	174
BspPI	GGATC	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	40
BssMI	GATC	1 cut(s)	274
Bst2UI	CCWGG	1 cut(s)	90
BstC8I	GCNNGC	2 cut(s)	264, 295
BstDEI	CTNAG	3 cut(s)	67, 201, 267
BstFNI	CGCG	1 cut(s)	56
BstHHI	GCGC	1 cut(s)	56
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	274
BstMWI	GCNNNNNNNGC	1 cut(s)	53
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	170
BstUI	CGCG	1 cut(s)	56
BstV1I	GCAGC	3 cut(s)	156, 268, 271
BstX2I	RGATCY	1 cut(s)	274
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	2 cut(s)	264, 295
CfoI	GCGC	1 cut(s)	56
Csp6I	GTAC	1 cut(s)	140
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	8 cut(s)	61, 71, 136, 164, 179, 205, 266, 297
CviKI_1	RGCY	8 cut(s)	61, 71, 136, 164, 179, 205, 266, 297
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	3 cut(s)	67, 201, 267
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eco24I	GRGCYC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	88
EcoT38I	GRGCYC	1 cut(s)	166
FaeI	CATG	1 cut(s)	146
FaiI	YATR	5 cut(s)	45, 76, 129, 144, 303
FatI	CATG	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	170, 257, 260
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	3 cut(s)	170, 257, 260
FspBI	CTAG	2 cut(s)	137, 310
GlaI	GCGC	1 cut(s)	55
GluI	GCNGC	3 cut(s)	170, 257, 260
GsuI	CTGGAG	1 cut(s)	72
HaeIII	GGCC	1 cut(s)	61
HhaI	GCGC	1 cut(s)	56
Hin1II	CATG	1 cut(s)	146
Hin6I	GCGC	1 cut(s)	54
HinP1I	GCGC	1 cut(s)	54
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	255
HpyCH4V	TGCA	4 cut(s)	95, 172, 184, 240
HpyF10VI	GCNNNNNNNGC	1 cut(s)	53
HpyF3I	CTNAG	3 cut(s)	67, 201, 267
Hsp92II	CATG	1 cut(s)	146
HspAI	GCGC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	9 cut(s)	21, 75, 102, 144, 168, 179, 248, 254, 279
Lsp1109I	GCAGC	3 cut(s)	156, 268, 271
MaeI	CTAG	2 cut(s)	137, 310
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MflI	RGATCY	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	166
MluCI	AATT	1 cut(s)	196
MmeI	TCCRAC	1 cut(s)	247
MnlI	CCTC	2 cut(s)	72, 168
MseI	TTAA	3 cut(s)	8, 147, 191
MspR9I	CCNGG	1 cut(s)	90
Mva1269I	GAATGC	1 cut(s)	295
MvaI	CCWGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	53
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	163
NspI	RCATGY	1 cut(s)	146
PciI	ACATGT	1 cut(s)	142
PctI	GAATGC	1 cut(s)	295
PkrI	GCNGC	3 cut(s)	171, 258, 261
PscI	ACATGT	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	88
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	1 cut(s)	163
PstI	CTGCAG	1 cut(s)	174
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
SaqAI	TTAA	3 cut(s)	8, 147, 191
SatI	GCNGC	3 cut(s)	170, 257, 260
Sau3AI	GATC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	166
SetI	ASST	4 cut(s)	73, 94, 138, 207
SfcI	CTRYAG	1 cut(s)	170
Sse9I	AATT	1 cut(s)	196
SspMI	CTAG	2 cut(s)	137, 310
StyD4I	CCNGG	1 cut(s)	88
TasI	AATT	1 cut(s)	196
TatI	WGTACW	1 cut(s)	139
Tru1I	TTAA	3 cut(s)	8, 147, 191
Tru9I	TTAA	3 cut(s)	8, 147, 191
TscAI	CASTG	1 cut(s)	40
TseI	GCWGC	3 cut(s)	169, 256, 259
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	40
XceI	RCATGY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	290
XspI	CTAG	2 cut(s)	137, 310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.