Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Forward (+)

3293719 .. 3298066

Gene Structure 4348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG042000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGTATTTGGAAAAGTTCGAACTTCAAAGTCTGGCAGCAAATGAATTACGCGTTTGCTGCTTGGGGCCCTGGAAAGAAATCATTCACTCTACTGTACCGTCTCTACTAGCATTTGCTAAGCATGCTTTAGAATACCTTGAAGACAATGAGGAGGATGTTGACAACCGACTGCACGAATCATGGAGGATGTCCTACTGTGTCTTTTGCCAAGCAAGTACCTATGATATAATCAGGTCACTGAAATTTGGGCACCGTGGGTCCTTTGGATCCTGTTGTTTCCATTTGGCGCTTACCAGTGCTAGTAACAATTGTTGTTTTGAACTTAGCTTCTGTTCTCGCAAAGAATGGTTCATCTCTGCTTCTCTTGATAGATCTGTTCTGCTTTGGGATCAGCTGGGAAGCACTGGGAAATATGCTTTTAGCGCGTGGCCTCACTTAGCTTCATATCAGAGTTCTCCAGGTGCAAAGAATAAGACCAATTCCAAGAACACAACTATATTTGTTGGAAATCTGGATGCTAACATTACTGATGATCCAGTATGGAGCCCTGCTGCAGAGGCTTTGCAAGGATTAAACAATTCTCAGCTTGGGGAACAAAATATCCAACTTTCTTGGGGTTGCAGTCCTTCAAACAAGCAGCAGCAGGCTCAGGCAGATCCAAACCAATGGAATGCTGGCTATTATGGATATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

230

Amino Acids

25.82

Weight (kDa)

5.48

Isoelectric Point (pI)

49.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	249
AccII	CGCG	2 cut(s)	51, 425
AclWI	GGATC	5 cut(s)	261, 274, 396, 527, 650
AcsI	RAATTY	1 cut(s)	242
AfaI	GTAC	2 cut(s)	96, 217
AflIII	ACRYGT	1 cut(s)	49
AgsI	TTSAA	4 cut(s)	26, 140, 320, 630
AjnI	CCWGG	2 cut(s)	68, 457
AloI	GAACNNNNNNTCC	2 cut(s)	585, 617
AluBI	AGCT	4 cut(s)	327, 394, 440, 586
AluI	AGCT	4 cut(s)	327, 394, 440, 586
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	5 cut(s)	261, 274, 396, 527, 650
AoxI	GGCC	2 cut(s)	65, 428
ApaI	GGGCCC	1 cut(s)	69
ApeKI	GCWGC	5 cut(s)	35, 57, 551, 637, 640
ApoI	RAATTY	1 cut(s)	242
Asp700I	GAANNNNTTC	1 cut(s)	81
AspLEI	GCGC	2 cut(s)	289, 425
AspS9I	GGNCC	3 cut(s)	65, 66, 258
AsuII	TTCGAA	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	258
BaeGI	GKGCMC	2 cut(s)	69, 252
BamHI	GGATCC	1 cut(s)	266
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	2 cut(s)	69, 548
BbsI	GAAGAC	1 cut(s)	147
BbvI	GCAGC	5 cut(s)	44, 47, 538, 649, 652
BciT130I	CCWGG	2 cut(s)	70, 459
BcoDI	GTCTC	1 cut(s)	105
BfaI	CTAG	2 cut(s)	107, 300
BfmI	CTRYAG	1 cut(s)	552
BfoI	RGCGCY	1 cut(s)	290
BglII	AGATCT	1 cut(s)	371
BisI	GCNGC	5 cut(s)	36, 58, 552, 638, 641
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	5 cut(s)	37, 59, 553, 639, 642
Bme1390I	CCNGG	2 cut(s)	70, 459
Bme18I	GGWCC	1 cut(s)	258
BmgT120I	GGNCC	3 cut(s)	65, 66, 258
BmiI	GGNNCC	6 cut(s)	66, 67, 251, 259, 268, 545
BmrFI	CCNGG	2 cut(s)	70, 459
BmrI	ACTGGG	1 cut(s)	414
BmsI	GCATC	1 cut(s)	505
BmuI	ACTGGG	1 cut(s)	414
BpiI	GAAGAC	1 cut(s)	147
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	648
Bpu1102I	GCTNAGC	1 cut(s)	117
Bpu14I	TTCGAA	1 cut(s)	18
BsaJI	CCNNGG	2 cut(s)	68, 253
Bse1I	ACTGG	3 cut(s)	294, 409, 536
BseBI	CCWGG	2 cut(s)	70, 459
BseDI	CCNNGG	2 cut(s)	68, 253
BseGI	GGATG	3 cut(s)	160, 192, 520
BseMII	CTCAG	2 cut(s)	596, 662
BseNI	ACTGG	3 cut(s)	294, 409, 536
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	2 cut(s)	69, 252
BseXI	GCAGC	5 cut(s)	44, 47, 538, 649, 652
BseYI	CCCAGC	1 cut(s)	394
BsgI	GTGCAG	1 cut(s)	155
Bsh1236I	CGCG	2 cut(s)	51, 425
BshFI	GGCC	2 cut(s)	67, 430
BshNI	GGYRCC	1 cut(s)	249
BsmAI	GTCTC	1 cut(s)	105
BsmBI	CGTCTC	1 cut(s)	105
BsmI	GAATGC	1 cut(s)	676
BsnI	GGCC	2 cut(s)	67, 430
Bsp119I	TTCGAA	1 cut(s)	18
Bsp120I	GGGCCC	1 cut(s)	65
Bsp1286I	GDGCHC	3 cut(s)	69, 252, 548
Bsp143I	GATC	5 cut(s)	266, 371, 388, 532, 655
Bsp1720I	GCTNAGC	1 cut(s)	117
BspANI	GGCC	2 cut(s)	67, 430
BspCNI	CTCAG	2 cut(s)	595, 661
BspFNI	CGCG	2 cut(s)	51, 425
BspLI	GGNNCC	6 cut(s)	66, 67, 251, 259, 268, 545
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	5 cut(s)	261, 274, 396, 527, 650
BspT104I	TTCGAA	1 cut(s)	18
BspT107I	GGYRCC	1 cut(s)	249
BsrI	ACTGG	3 cut(s)	294, 409, 536
BssECI	CCNNGG	2 cut(s)	68, 253
BssMI	GATC	5 cut(s)	266, 371, 388, 532, 655
Bst2UI	CCWGG	2 cut(s)	70, 459
Bst4CI	ACNGT	4 cut(s)	94, 99, 197, 254
BstBI	TTCGAA	1 cut(s)	18
BstC8I	GCNNGC	3 cut(s)	123, 645, 676
BstDEI	CTNAG	5 cut(s)	117, 323, 436, 582, 648
BstDSI	CCRYGG	1 cut(s)	253
BstF5I	GGATG	3 cut(s)	160, 192, 520
BstFNI	CGCG	2 cut(s)	51, 425
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	2 cut(s)	289, 425
BstKTI	GATC	5 cut(s)	269, 374, 391, 535, 658
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	5 cut(s)	266, 371, 388, 532, 655
BstMWI	GCNNNNNNNGC	4 cut(s)	57, 122, 422, 557
BstNI	CCWGG	2 cut(s)	70, 459
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	68, 457
BstSFI	CTRYAG	1 cut(s)	552
BstSLI	GKGCMC	2 cut(s)	69, 252
BstUI	CGCG	2 cut(s)	51, 425
BstV1I	GCAGC	5 cut(s)	44, 47, 538, 649, 652
BstV2I	GAAGAC	1 cut(s)	147
BstX2I	RGATCY	3 cut(s)	266, 371, 655
BstXI	CCANNNNNNTGG	1 cut(s)	666
BstYI	RGATCY	3 cut(s)	266, 371, 655
BsuRI	GGCC	2 cut(s)	67, 430
BtgI	CCRYGG	1 cut(s)	253
BtsCI	GGATG	3 cut(s)	160, 192, 520
BtsIMutI	CAGTG	3 cut(s)	236, 301, 402
Cac8I	GCNNGC	3 cut(s)	123, 645, 676
CfoI	GCGC	2 cut(s)	289, 425
Cfr13I	GGNCC	3 cut(s)	65, 66, 258
Csp6I	GTAC	2 cut(s)	95, 216
CviAII	CATG	2 cut(s)	122, 180
CviQI	GTAC	2 cut(s)	95, 216
DdeI	CTNAG	5 cut(s)	117, 323, 436, 582, 648
DpnI	GATC	5 cut(s)	268, 373, 390, 534, 657
DpnII	GATC	5 cut(s)	266, 371, 388, 532, 655
Eco24I	GRGCYC	2 cut(s)	69, 548
Eco47I	GGWCC	1 cut(s)	258
EcoO109I	RGGNCCY	3 cut(s)	65, 66, 258
EcoRII	CCWGG	2 cut(s)	68, 457
EcoT38I	GRGCYC	2 cut(s)	69, 548
Esp3I	CGTCTC	1 cut(s)	105
FaeI	CATG	2 cut(s)	125, 183
FaiI	YATR	9 cut(s)	123, 181, 222, 227, 414, 445, 497, 541, 684
FatI	CATG	2 cut(s)	121, 179
Fnu4HI	GCNGC	5 cut(s)	36, 58, 552, 638, 641
FokI	GGATG	3 cut(s)	167, 199, 527
FriOI	GRGCYC	2 cut(s)	69, 548
Fsp4HI	GCNGC	5 cut(s)	36, 58, 552, 638, 641
FspBI	CTAG	2 cut(s)	107, 300
GlaI	GCGC	2 cut(s)	288, 424
GluI	GCNGC	5 cut(s)	36, 58, 552, 638, 641
GsaI	CCCAGC	1 cut(s)	398
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	67, 430
HhaI	GCGC	2 cut(s)	289, 425
Hin1II	CATG	2 cut(s)	125, 183
Hin6I	GCGC	2 cut(s)	287, 423
HinP1I	GCGC	2 cut(s)	287, 423
HincII	GTYRAC	1 cut(s)	160
HindII	GTYRAC	1 cut(s)	160
HinfI	GANTC	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188I	TCNGA	1 cut(s)	450
Hpy188III	TCNNGA	2 cut(s)	365, 512
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	1 cut(s)	636
HpyCH4III	ACNGT	4 cut(s)	94, 99, 197, 254
HpyCH4V	TGCA	5 cut(s)	172, 464, 554, 565, 621
HpyF10VI	GCNNNNNNNGC	4 cut(s)	57, 122, 422, 557
HpyF3I	CTNAG	5 cut(s)	117, 323, 436, 582, 648
Hsp92II	CATG	2 cut(s)	125, 183
HspAI	GCGC	2 cut(s)	287, 423
Kzo9I	GATC	5 cut(s)	266, 371, 388, 532, 655
LmnI	GCTCC	1 cut(s)	543
Lsp1109I	GCAGC	5 cut(s)	44, 47, 538, 649, 652
LweI	GCATC	1 cut(s)	505
MaeI	CTAG	2 cut(s)	107, 300
MaeIII	GTNAC	2 cut(s)	234, 302
MalI	GATC	5 cut(s)	268, 373, 390, 534, 657
MboI	GATC	5 cut(s)	266, 371, 388, 532, 655
MboII	GAAGA	1 cut(s)	152
MfeI	CAATTG	1 cut(s)	307
MflI	RGATCY	3 cut(s)	266, 371, 655
MhlI	GDGCHC	3 cut(s)	69, 252, 548
MluCI	AATT	5 cut(s)	44, 242, 307, 478, 577
MluI	ACGCGT	1 cut(s)	49
MmeI	TCCRAC	2 cut(s)	484, 628
MnlI	CCTC	5 cut(s)	142, 145, 177, 441, 550
MroXI	GAANNNNTTC	1 cut(s)	81
MseI	TTAA	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	394
MspR9I	CCNGG	2 cut(s)	70, 459
MunI	CAATTG	1 cut(s)	307
Mva1269I	GAATGC	1 cut(s)	676
MvaI	CCWGG	2 cut(s)	70, 459
MvnI	CGCG	2 cut(s)	51, 425
MwoI	GCNNNNNNNGC	4 cut(s)	57, 122, 422, 557
NdeII	GATC	5 cut(s)	266, 371, 388, 532, 655
NlaIII	CATG	2 cut(s)	125, 183
NlaIV	GGNNCC	6 cut(s)	66, 67, 251, 259, 268, 545
NmuCI	GTSAC	1 cut(s)	234
NspI	RCATGY	1 cut(s)	125
NspV	TTCGAA	1 cut(s)	18
PaeI	GCATGC	1 cut(s)	125
PctI	GAATGC	1 cut(s)	676
PdmI	GAANNNNTTC	1 cut(s)	81
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	5 cut(s)	37, 59, 553, 639, 642
PpuMI	RGGWCCY	1 cut(s)	258
Psp5II	RGGWCCY	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	68, 457
PspFI	CCCAGC	1 cut(s)	394
PspGI	CCWGG	2 cut(s)	68, 457
PspN4I	GGNNCC	6 cut(s)	66, 67, 251, 259, 268, 545
PspOMI	GGGCCC	1 cut(s)	65
PspPI	GGNCC	3 cut(s)	65, 66, 258
PspPPI	RGGWCCY	1 cut(s)	258
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	3 cut(s)	266, 371, 655
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	2 cut(s)	96, 217
RsaNI	GTAC	2 cut(s)	95, 216
SaqAI	TTAA	1 cut(s)	572
SatI	GCNGC	5 cut(s)	36, 58, 552, 638, 641
Sau3AI	GATC	5 cut(s)	266, 371, 388, 532, 655
Sau96I	GGNCC	3 cut(s)	65, 66, 258
ScrFI	CCNGG	2 cut(s)	70, 459
SduI	GDGCHC	3 cut(s)	69, 252, 548
SetI	ASST	8 cut(s)	138, 221, 236, 329, 396, 442, 463, 588
SfaNI	GCATC	1 cut(s)	505
SfcI	CTRYAG	1 cut(s)	552
SfuI	TTCGAA	1 cut(s)	18
SinI	GGWCC	1 cut(s)	258
SphI	GCATGC	1 cut(s)	125
Sse9I	AATT	5 cut(s)	44, 242, 307, 478, 577
SspMI	CTAG	2 cut(s)	107, 300
StyD4I	CCNGG	2 cut(s)	68, 457
TaaI	ACNGT	4 cut(s)	94, 99, 197, 254
TaqI	TCGA	1 cut(s)	18
TasI	AATT	5 cut(s)	44, 242, 307, 478, 577
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	572
Tru9I	TTAA	1 cut(s)	572
TscAI	CASTG	3 cut(s)	243, 301, 409
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	5 cut(s)	35, 57, 551, 637, 640
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	3 cut(s)	57, 340, 432
TspRI	CASTG	3 cut(s)	243, 301, 409
VpaK11BI	GGWCC	1 cut(s)	258
XapI	RAATTY	1 cut(s)	242
XceI	RCATGY	1 cut(s)	125
XcmI	CCANNNNNNNNNTGG	1 cut(s)	671
XmnI	GAANNNNTTC	1 cut(s)	81
XspI	CTAG	2 cut(s)	107, 300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.