Prupe.4G022900_v2.0.a1

Polyadenylate-binding protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
1080026 .. 1084234
4209 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G022900.2

Sequence Viewer

Length: 1212 bp
ATGATGCAACCTGGGGCAGGCGGTGTGGCTCCGTCAGCATTAGGCCAGCAGTACGGACAGCAGCCCTACATGATGATGGCGCCGCCTCCCCCCCCGACGGCCCAGGCACCCCCAATGTGGGCCCCGCAGTCCCAGGTGGCCCCACCGCCTGGGCAGCTCGTCCAGCAGCAGCCCCAGCCCACCTCCGCCGACGAGGTCCGTACGCTCTGGATCGGCGACTTGCAGTACTGGATGGAGGAGACCTATCTCTACAATATTCTCGTTCACACCGGCGAGCTTGTTTCTGTGAAAGTTATCCGCAATAAGCAAACTACACAATCAGAGGGTTATGGATTTATTGAATTCAGTAGCCGTGCTGCTGCAGAAAGAGTACTTCAGTCGTACAACGGTACCCCTATGCCAAATGGTGCCCAGAATTTCAGATTGAACTGGGCATCTGCAGGGGAGAAGCGTTCTGATGATACCCCTGATTATACCATATTTGTTGGAGACTTGGCTTCTGATGTGACGGATTACATGCTTCAAGAGACATTCCGGGCCCGTTTTCCCTCATGCAAAGGTGCCAAGGTTGTCATTGACAGGCTCACAGGGCGCACCAAGGGATATGGGTTTGTTAAGTTCGGAGATGAGTCCGAACAGTTGCGTGCCATGACTGAGATGAATGGAGTTCTCTGCTCAACAAGGCCTATGCGAATTGGGCCAGCTGCTAACAAAAATGCTGGGGGTAGTCAGCAATATTCAAAAGGTTCATATCAGAATTCTCAAGGTTCAAAGAATGAGAGTGATCCGAACAATACAACTATATTTGTAGGTAACCTGGATGGTAATGTTACTGATGACCATTTGAGACAAGTCTTCAGCCAGTACGGTGACCTATTACATGTGAAGATACCAGCGGGCAAGCGATGTGGGTTTGTTCAGTTTCAAGACAGAAGCTGTGCTGAAGAAGCATTGCGCGTGTTAAATGGATCTCAGTTGGGTGCACAAAATATCCGACTTTCATGGGGCCGCAGTCCTTCAAACAAGCAGCCTCAGGCAGATCCAAACCAATGGAATGGCGGTGGCTACTATGGATATGCACCTACTCCCGATGGTTATGGGTACGCCCAAGTTTCTCAAGACCCTAGCATGTACTATGGAGGATATCCTGCTGGGTACAGTAATTACCAACAGCCGCCACAGCAGCAGCAGCAGCAAGTGGGATATAGCTGA

Protein Analysis

404

Amino Acids

44.34

Weight (kDa)

6.0

Isoelectric Point (pI)

54.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 389
AccB1I GGYRCC 5 cut(s) 79, 106, 389, 407, 560
AccB7I CCANNNNNTGG 1 cut(s) 149
AccII CGCG 1 cut(s) 957
AclWI GGATC 4 cut(s) 218, 779, 976, 1034
AcsI RAATTY 3 cut(s) 341, 415, 757
AcuI CTGAAG 3 cut(s) 359, 841, 963
AcyI GRCGYC 1 cut(s) 80
AfiI CCNNNNNNNGG 5 cut(s) 17, 97, 117, 118, 149
AflIII ACRYGT 1 cut(s) 880
AgsI TTSAA 7 cut(s) 341, 427, 524, 741, 771, 926, 1020
AjnI CCWGG 5 cut(s) 10, 102, 132, 148, 816
AluBI AGCT 5 cut(s) 157, 277, 704, 936, 1209
AluI AGCT 5 cut(s) 157, 277, 704, 936, 1209
Alw21I GWGCWC 1 cut(s) 985
Alw26I GTCTC 4 cut(s) 233, 483, 521, 841
Alw44I GTGCAC 1 cut(s) 981
AlwI GGATC 4 cut(s) 218, 779, 976, 1034
AlwNI CAGNNNCTG 1 cut(s) 936
AoxI GGCC 8 cut(s) 43, 99, 120, 138, 537, 683, 698, 1006
ApaI GGGCCC 2 cut(s) 124, 541
ApaLI GTGCAC 1 cut(s) 981
ApoI RAATTY 3 cut(s) 341, 415, 757
Asp718I GGTACC 1 cut(s) 389
AspLEI GCGC 3 cut(s) 82, 594, 957
AspS9I GGNCC 9 cut(s) 100, 120, 121, 139, 196, 537, 538, 698, 1006
AsuC2I CCSGG 1 cut(s) 536
AsuHPI GGTGA 1 cut(s) 881
AvaII GGWCC 1 cut(s) 196
AxyI CCTNAGG 1 cut(s) 1032
BaeGI GKGCMC 4 cut(s) 124, 412, 541, 985
BaeI ACNNNNGTAYC 2 cut(s) 373, 406
BanI GGYRCC 5 cut(s) 79, 106, 389, 407, 560
BanII GRGCYC 2 cut(s) 124, 541
BbsI GAAGAC 1 cut(s) 847
Bbv12I GWGCWC 1 cut(s) 985
BccI CCATC 4 cut(s) 70, 226, 815, 1085
BceAI ACGGC 2 cut(s) 114, 336
BciT130I CCWGG 5 cut(s) 12, 104, 134, 150, 818
BcnI CCSGG 1 cut(s) 536
BcoDI GTCTC 4 cut(s) 233, 483, 521, 841
BfaI CTAG 1 cut(s) 1125
BfmI CTRYAG 2 cut(s) 360, 438
BfoI RGCGCY 1 cut(s) 83
BmcAI AGTACT 2 cut(s) 227, 372
Bme1390I CCNGG 6 cut(s) 12, 104, 134, 150, 536, 818
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 9 cut(s) 100, 120, 121, 139, 196, 537, 538, 698, 1006
BmrFI CCNGG 6 cut(s) 12, 104, 134, 150, 536, 818
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 1 cut(s) 443
BmuI ACTGGG 1 cut(s) 439
BpiI GAAGAC 1 cut(s) 847
BpuEI CTTGAG 2 cut(s) 747, 1101
BpuMI CCSGG 1 cut(s) 536
BsaHI GRCGYC 1 cut(s) 80
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 6 cut(s) 11, 102, 132, 149, 564, 597
Bsc4I CCNNNNNNNGG 5 cut(s) 17, 97, 117, 118, 149
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 3 cut(s) 233, 434, 862
Bse21I CCTNAGG 1 cut(s) 1032
Bse3DI GCAATG 1 cut(s) 950
BseBI CCWGG 5 cut(s) 12, 104, 134, 150, 818
BseDI CCNNGG 6 cut(s) 11, 102, 132, 149, 564, 597
BseGI GGATG 2 cut(s) 237, 826
BseLI CCNNNNNNNGG 5 cut(s) 17, 97, 117, 118, 149
BseMI GCAATG 1 cut(s) 950
BseMII CTCAG 3 cut(s) 645, 986, 1046
BseNI ACTGG 3 cut(s) 233, 434, 862
BseRI GAGGAG 1 cut(s) 251
BseSI GKGCMC 4 cut(s) 124, 412, 541, 985
BseYI CCCAGC 3 cut(s) 174, 719, 1151
Bsh1236I CGCG 1 cut(s) 957
BshFI GGCC 8 cut(s) 45, 101, 122, 140, 539, 685, 700, 1008
BshNI GGYRCC 5 cut(s) 79, 106, 389, 407, 560
BsiHKAI GWGCWC 1 cut(s) 985
BsiSI CCGG 2 cut(s) 270, 535
BsiWI CGTACG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 5 cut(s) 17, 97, 117, 118, 149
BsmAI GTCTC 4 cut(s) 233, 483, 521, 841
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 8 cut(s) 45, 101, 122, 140, 539, 685, 700, 1008
Bso31I GGTCTC 1 cut(s) 233
Bsp120I GGGCCC 2 cut(s) 120, 537
Bsp1286I GDGCHC 4 cut(s) 124, 412, 541, 985
Bsp143I GATC 4 cut(s) 210, 784, 968, 1039
BspANI GGCC 8 cut(s) 45, 101, 122, 140, 539, 685, 700, 1008
BspCNI CTCAG 3 cut(s) 646, 985, 1045
BspFNI CGCG 1 cut(s) 957
BspMAI CTGCAG 2 cut(s) 364, 442
BspPI GGATC 4 cut(s) 218, 779, 976, 1034
BspT107I GGYRCC 5 cut(s) 79, 106, 389, 407, 560
BspTNI GGTCTC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 950
BsrFI RCCGGY 1 cut(s) 269
BsrI ACTGG 3 cut(s) 233, 434, 862
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 6 cut(s) 11, 102, 132, 149, 564, 597
BssMI GATC 4 cut(s) 210, 784, 968, 1039
BssNI GRCGYC 1 cut(s) 80
BssT1I CCWWGG 2 cut(s) 564, 597
Bst2UI CCWGG 5 cut(s) 12, 104, 134, 150, 818
Bst4CI ACNGT 4 cut(s) 389, 639, 869, 1160
BstACI GRCGYC 1 cut(s) 80
BstC8I GCNNGC 7 cut(s) 19, 47, 275, 645, 702, 898, 902
BstDEI CTNAG 3 cut(s) 654, 972, 1032
BstEII GGTNACC 2 cut(s) 812, 869
BstENI CCTNNNNNAGG 1 cut(s) 15
BstF5I GGATG 2 cut(s) 237, 826
BstFNI CGCG 1 cut(s) 957
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 3 cut(s) 82, 594, 957
BstKTI GATC 4 cut(s) 213, 787, 971, 1042
BstMAI GTCTC 4 cut(s) 233, 483, 521, 841
BstMBI GATC 4 cut(s) 210, 784, 968, 1039
BstNI CCWGG 5 cut(s) 12, 104, 134, 150, 818
BstNSI RCATGY 3 cut(s) 520, 884, 1132
BstPI GGTNACC 2 cut(s) 812, 869
BstSCI CCNGG 6 cut(s) 10, 102, 132, 148, 534, 816
BstSFI CTRYAG 2 cut(s) 360, 438
BstSLI GKGCMC 4 cut(s) 124, 412, 541, 985
BstUI CGCG 1 cut(s) 957
BstV2I GAAGAC 1 cut(s) 847
BstX2I RGATCY 2 cut(s) 968, 1039
BstXI CCANNNNNNTGG 2 cut(s) 1050, 1055
BstYI RGATCY 2 cut(s) 968, 1039
Bsu36I CCTNAGG 1 cut(s) 1032
BsuRI GGCC 8 cut(s) 45, 101, 122, 140, 539, 685, 700, 1008
BtgZI GCGATG 1 cut(s) 919
BtsCI GGATG 2 cut(s) 237, 826
Cac8I GCNNGC 7 cut(s) 19, 47, 275, 645, 702, 898, 902
CaiI CAGNNNCTG 1 cut(s) 936
CfoI GCGC 3 cut(s) 82, 594, 957
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 9 cut(s) 100, 120, 121, 139, 196, 537, 538, 698, 1006
CspCI CAANNNNNGTGG 2 cut(s) 889, 924
CviAII CATG 7 cut(s) 70, 517, 552, 649, 881, 1002, 1129
DdeI CTNAG 3 cut(s) 654, 972, 1032
DinI GGCGCC 1 cut(s) 81
DpnI GATC 4 cut(s) 212, 786, 970, 1041
DpnII GATC 4 cut(s) 210, 784, 968, 1039
EciI GGCGGA 1 cut(s) 175
Eco130I CCWWGG 2 cut(s) 564, 597
Eco147I AGGCCT 1 cut(s) 685
Eco24I GRGCYC 2 cut(s) 124, 541
Eco31I GGTCTC 1 cut(s) 233
Eco32I GATATC 1 cut(s) 1145
Eco47I GGWCC 1 cut(s) 196
Eco57I CTGAAG 3 cut(s) 359, 841, 963
Eco81I CCTNAGG 1 cut(s) 1032
Eco91I GGTNACC 2 cut(s) 812, 869
EcoNI CCTNNNNNAGG 1 cut(s) 15
EcoO109I RGGNCCY 1 cut(s) 121
EcoO65I GGTNACC 2 cut(s) 812, 869
EcoRI GAATTC 2 cut(s) 341, 757
EcoRII CCWGG 5 cut(s) 10, 102, 132, 148, 816
EcoRV GATATC 1 cut(s) 1145
EcoT14I CCWWGG 2 cut(s) 564, 597
EcoT38I GRGCYC 2 cut(s) 124, 541
EgeI GGCGCC 1 cut(s) 81
EheI GGCGCC 1 cut(s) 81
ErhI CCWWGG 2 cut(s) 564, 597
FaeI CATG 7 cut(s) 73, 520, 555, 652, 884, 1005, 1132
FaqI GGGAC 1 cut(s) 115
FatI CATG 7 cut(s) 69, 516, 551, 648, 880, 1001, 1128
FauI CCCGC 2 cut(s) 132, 889
FokI GGATG 2 cut(s) 244, 833
FriOI GRGCYC 2 cut(s) 124, 541
FspBI CTAG 1 cut(s) 1125
GlaI GCGC 3 cut(s) 81, 593, 956
GsaI CCCAGC 3 cut(s) 178, 723, 1155
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 8 cut(s) 45, 101, 122, 140, 539, 685, 700, 1008
HapII CCGG 2 cut(s) 270, 535
HhaI GCGC 3 cut(s) 82, 594, 957
Hin1I GRCGYC 1 cut(s) 80
Hin1II CATG 7 cut(s) 73, 520, 555, 652, 884, 1005, 1132
Hin6I GCGC 3 cut(s) 80, 592, 955
HinP1I GCGC 3 cut(s) 80, 592, 955
HinfI GANTC 1 cut(s) 629
HpaII CCGG 2 cut(s) 270, 535
HphI GGTGA 1 cut(s) 881
Hpy166II GTNNAC 2 cut(s) 265, 983
Hpy188I TCNGA 9 cut(s) 322, 422, 457, 502, 623, 634, 756, 789, 995
Hpy188III TCNNGA 5 cut(s) 208, 524, 926, 1088, 1118
Hpy8I GTNNAC 2 cut(s) 265, 983
Hpy99I CGWCG 2 cut(s) 100, 194
HpyAV CCTTC 1 cut(s) 1026
HpyCH4III ACNGT 4 cut(s) 389, 639, 869, 1160
HpyCH4V TGCA 7 cut(s) 7, 223, 362, 440, 555, 983, 1079
HpyF3I CTNAG 3 cut(s) 654, 972, 1032
Hsp92I GRCGYC 1 cut(s) 80
Hsp92II CATG 7 cut(s) 73, 520, 555, 652, 884, 1005, 1132
HspAI GCGC 3 cut(s) 80, 592, 955
KasI GGCGCC 1 cut(s) 79
KpnI GGTACC 1 cut(s) 393
Kzo9I GATC 4 cut(s) 210, 784, 968, 1039
LmnI GCTCC 1 cut(s) 34
LweI GCATC 1 cut(s) 443
MaeI CTAG 1 cut(s) 1125
MaeIII GTNAC 4 cut(s) 505, 812, 829, 869
MalI GATC 4 cut(s) 212, 786, 970, 1041
MboI GATC 4 cut(s) 210, 784, 968, 1039
MboII GAAGA 3 cut(s) 847, 898, 956
MflI RGATCY 2 cut(s) 968, 1039
MhlI GDGCHC 4 cut(s) 124, 412, 541, 985
MluCI AATT 5 cut(s) 341, 415, 693, 757, 1162
Mly113I GGCGCC 1 cut(s) 80
MlyI GAGTC 1 cut(s) 638
MmeI TCCRAC 2 cut(s) 466, 1018
MnlI CCTC 8 cut(s) 96, 187, 193, 229, 316, 559, 1041, 1133
MseI TTAA 2 cut(s) 615, 962
MslI CAYNNNNRTG 1 cut(s) 74
MspA1I CMGCKG 2 cut(s) 704, 896
MspI CCGG 2 cut(s) 270, 535
MspR9I CCNGG 6 cut(s) 12, 104, 134, 150, 536, 818
MvaI CCWGG 5 cut(s) 12, 104, 134, 150, 818
MvnI CGCG 1 cut(s) 957
NarI GGCGCC 1 cut(s) 80
NciI CCSGG 1 cut(s) 536
NdeII GATC 4 cut(s) 210, 784, 968, 1039
NlaIII CATG 7 cut(s) 73, 520, 555, 652, 884, 1005, 1132
NmuCI GTSAC 2 cut(s) 505, 869
NspI RCATGY 3 cut(s) 520, 884, 1132
PceI AGGCCT 1 cut(s) 685
PciI ACATGT 1 cut(s) 880
Pfl23II CGTACG 1 cut(s) 200
PflFI GACNNNGTC 1 cut(s) 194
PflMI CCANNNNNTGG 1 cut(s) 149
PleI GAGTC 1 cut(s) 637
PluTI GGCGCC 1 cut(s) 83
PpsI GAGTC 1 cut(s) 637
PscI ACATGT 1 cut(s) 880
Psp6I CCWGG 5 cut(s) 10, 102, 132, 148, 816
PspEI GGTNACC 2 cut(s) 812, 869
PspFI CCCAGC 3 cut(s) 174, 719, 1151
PspGI CCWGG 5 cut(s) 10, 102, 132, 148, 816
PspLI CGTACG 1 cut(s) 200
PspOMI GGGCCC 2 cut(s) 120, 537
PspPI GGNCC 9 cut(s) 100, 120, 121, 139, 196, 537, 538, 698, 1006
PstI CTGCAG 2 cut(s) 364, 442
PstNI CAGNNNCTG 1 cut(s) 936
PsuI RGATCY 2 cut(s) 968, 1039
PsyI GACNNNGTC 1 cut(s) 194
PvuII CAGCTG 1 cut(s) 704
RseI CAYNNNNRTG 1 cut(s) 74
SaqAI TTAA 2 cut(s) 615, 962
Sau3AI GATC 4 cut(s) 210, 784, 968, 1039
Sau96I GGNCC 9 cut(s) 100, 120, 121, 139, 196, 537, 538, 698, 1006
ScaI AGTACT 2 cut(s) 227, 372
SchI GAGTC 1 cut(s) 638
ScrFI CCNGG 6 cut(s) 12, 104, 134, 150, 536, 818
SduI GDGCHC 4 cut(s) 124, 412, 541, 985
SfaNI GCATC 1 cut(s) 443
SfcI CTRYAG 2 cut(s) 360, 438
SfoI GGCGCC 1 cut(s) 81
SgrAI CRCCGGYG 1 cut(s) 269
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 1 cut(s) 74
SmlI CTYRAG 2 cut(s) 762, 1116
SmoI CTYRAG 2 cut(s) 762, 1116
Sse9I AATT 5 cut(s) 341, 415, 693, 757, 1162
SseBI AGGCCT 1 cut(s) 685
SspDI GGCGCC 1 cut(s) 79
SspI AATATT 2 cut(s) 256, 737
SspMI CTAG 1 cut(s) 1125
StuI AGGCCT 1 cut(s) 685
StyD4I CCNGG 6 cut(s) 10, 102, 132, 148, 534, 816
StyI CCWWGG 2 cut(s) 564, 597
TaaI ACNGT 4 cut(s) 389, 639, 869, 1160
TasI AATT 5 cut(s) 341, 415, 693, 757, 1162
TatI WGTACW 3 cut(s) 225, 370, 1131
TauI GCSGC 3 cut(s) 85, 1011, 1177
Tru1I TTAA 2 cut(s) 615, 962
Tru9I TTAA 2 cut(s) 615, 962
TseFI GTSAC 2 cut(s) 505, 869
Tsp45I GTSAC 2 cut(s) 505, 869
TspDTI ATGAA 3 cut(s) 674, 738, 990
TspGWI ACGGA 4 cut(s) 21, 69, 188, 524
Tth111I GACNNNGTC 1 cut(s) 194
Van91I CCANNNNNTGG 1 cut(s) 149
VneI GTGCAC 1 cut(s) 981
VpaK11BI GGWCC 1 cut(s) 196
XagI CCTNNNNNAGG 1 cut(s) 15
XapI RAATTY 3 cut(s) 341, 415, 757
XceI RCATGY 3 cut(s) 520, 884, 1132
XspI CTAG 1 cut(s) 1125
ZrmI AGTACT 2 cut(s) 227, 372
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.