Polyadenylate-binding protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G11650 AT1G11650 |
| fragaria_vesca | FvH4_3g02320 |
| malus_domestica | MD10G1319600.v1.1 |
| prunus_persica | Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1 |
| pyrus_communis | pycom10g27050 |
| rosa_chinensis | RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531 |
| rosa_laevigata | RLG00000015982 RLG00000031149 |
| rosa_multiflora | Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007 |
| rosa_roxburghii | Rroxscaffold_1G00072430 |
| rosa_rugosa | Rorug01G0486600 Rorug04G0403900 |
| rosa_samantha | Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700 |
| rosa_wichuraiana | Rw5G002850 Rw5G002890 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 389 |
| AccB1I | GGYRCC | 5 cut(s) | 79, 106, 389, 407, 560 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 149 |
| AccII | CGCG | 1 cut(s) | 957 |
| AclWI | GGATC | 4 cut(s) | 218, 779, 976, 1034 |
| AcsI | RAATTY | 3 cut(s) | 341, 415, 757 |
| AcuI | CTGAAG | 3 cut(s) | 359, 841, 963 |
| AcyI | GRCGYC | 1 cut(s) | 80 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 17, 97, 117, 118, 149 |
| AflIII | ACRYGT | 1 cut(s) | 880 |
| AgsI | TTSAA | 7 cut(s) | 341, 427, 524, 741, 771, 926, 1020 |
| AjnI | CCWGG | 5 cut(s) | 10, 102, 132, 148, 816 |
| AluBI | AGCT | 5 cut(s) | 157, 277, 704, 936, 1209 |
| AluI | AGCT | 5 cut(s) | 157, 277, 704, 936, 1209 |
| Alw21I | GWGCWC | 1 cut(s) | 985 |
| Alw26I | GTCTC | 4 cut(s) | 233, 483, 521, 841 |
| Alw44I | GTGCAC | 1 cut(s) | 981 |
| AlwI | GGATC | 4 cut(s) | 218, 779, 976, 1034 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 936 |
| AoxI | GGCC | 8 cut(s) | 43, 99, 120, 138, 537, 683, 698, 1006 |
| ApaI | GGGCCC | 2 cut(s) | 124, 541 |
| ApaLI | GTGCAC | 1 cut(s) | 981 |
| ApoI | RAATTY | 3 cut(s) | 341, 415, 757 |
| Asp718I | GGTACC | 1 cut(s) | 389 |
| AspLEI | GCGC | 3 cut(s) | 82, 594, 957 |
| AspS9I | GGNCC | 9 cut(s) | 100, 120, 121, 139, 196, 537, 538, 698, 1006 |
| AsuC2I | CCSGG | 1 cut(s) | 536 |
| AsuHPI | GGTGA | 1 cut(s) | 881 |
| AvaII | GGWCC | 1 cut(s) | 196 |
| AxyI | CCTNAGG | 1 cut(s) | 1032 |
| BaeGI | GKGCMC | 4 cut(s) | 124, 412, 541, 985 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 373, 406 |
| BanI | GGYRCC | 5 cut(s) | 79, 106, 389, 407, 560 |
| BanII | GRGCYC | 2 cut(s) | 124, 541 |
| BbsI | GAAGAC | 1 cut(s) | 847 |
| Bbv12I | GWGCWC | 1 cut(s) | 985 |
| BccI | CCATC | 4 cut(s) | 70, 226, 815, 1085 |
| BceAI | ACGGC | 2 cut(s) | 114, 336 |
| BciT130I | CCWGG | 5 cut(s) | 12, 104, 134, 150, 818 |
| BcnI | CCSGG | 1 cut(s) | 536 |
| BcoDI | GTCTC | 4 cut(s) | 233, 483, 521, 841 |
| BfaI | CTAG | 1 cut(s) | 1125 |
| BfmI | CTRYAG | 2 cut(s) | 360, 438 |
| BfoI | RGCGCY | 1 cut(s) | 83 |
| BmcAI | AGTACT | 2 cut(s) | 227, 372 |
| Bme1390I | CCNGG | 6 cut(s) | 12, 104, 134, 150, 536, 818 |
| Bme18I | GGWCC | 1 cut(s) | 196 |
| BmgT120I | GGNCC | 9 cut(s) | 100, 120, 121, 139, 196, 537, 538, 698, 1006 |
| BmrFI | CCNGG | 6 cut(s) | 12, 104, 134, 150, 536, 818 |
| BmrI | ACTGGG | 1 cut(s) | 439 |
| BmsI | GCATC | 1 cut(s) | 443 |
| BmuI | ACTGGG | 1 cut(s) | 439 |
| BpiI | GAAGAC | 1 cut(s) | 847 |
| BpuEI | CTTGAG | 2 cut(s) | 747, 1101 |
| BpuMI | CCSGG | 1 cut(s) | 536 |
| BsaHI | GRCGYC | 1 cut(s) | 80 |
| BsaI | GGTCTC | 1 cut(s) | 233 |
| BsaJI | CCNNGG | 6 cut(s) | 11, 102, 132, 149, 564, 597 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 17, 97, 117, 118, 149 |
| Bse118I | RCCGGY | 1 cut(s) | 269 |
| Bse1I | ACTGG | 3 cut(s) | 233, 434, 862 |
| Bse21I | CCTNAGG | 1 cut(s) | 1032 |
| Bse3DI | GCAATG | 1 cut(s) | 950 |
| BseBI | CCWGG | 5 cut(s) | 12, 104, 134, 150, 818 |
| BseDI | CCNNGG | 6 cut(s) | 11, 102, 132, 149, 564, 597 |
| BseGI | GGATG | 2 cut(s) | 237, 826 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 17, 97, 117, 118, 149 |
| BseMI | GCAATG | 1 cut(s) | 950 |
| BseMII | CTCAG | 3 cut(s) | 645, 986, 1046 |
| BseNI | ACTGG | 3 cut(s) | 233, 434, 862 |
| BseRI | GAGGAG | 1 cut(s) | 251 |
| BseSI | GKGCMC | 4 cut(s) | 124, 412, 541, 985 |
| BseYI | CCCAGC | 3 cut(s) | 174, 719, 1151 |
| Bsh1236I | CGCG | 1 cut(s) | 957 |
| BshFI | GGCC | 8 cut(s) | 45, 101, 122, 140, 539, 685, 700, 1008 |
| BshNI | GGYRCC | 5 cut(s) | 79, 106, 389, 407, 560 |
| BsiHKAI | GWGCWC | 1 cut(s) | 985 |
| BsiSI | CCGG | 2 cut(s) | 270, 535 |
| BsiWI | CGTACG | 1 cut(s) | 200 |
| BslFI | GGGAC | 1 cut(s) | 115 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 17, 97, 117, 118, 149 |
| BsmAI | GTCTC | 4 cut(s) | 233, 483, 521, 841 |
| BsmFI | GGGAC | 1 cut(s) | 115 |
| BsnI | GGCC | 8 cut(s) | 45, 101, 122, 140, 539, 685, 700, 1008 |
| Bso31I | GGTCTC | 1 cut(s) | 233 |
| Bsp120I | GGGCCC | 2 cut(s) | 120, 537 |
| Bsp1286I | GDGCHC | 4 cut(s) | 124, 412, 541, 985 |
| Bsp143I | GATC | 4 cut(s) | 210, 784, 968, 1039 |
| BspANI | GGCC | 8 cut(s) | 45, 101, 122, 140, 539, 685, 700, 1008 |
| BspCNI | CTCAG | 3 cut(s) | 646, 985, 1045 |
| BspFNI | CGCG | 1 cut(s) | 957 |
| BspMAI | CTGCAG | 2 cut(s) | 364, 442 |
| BspPI | GGATC | 4 cut(s) | 218, 779, 976, 1034 |
| BspT107I | GGYRCC | 5 cut(s) | 79, 106, 389, 407, 560 |
| BspTNI | GGTCTC | 1 cut(s) | 233 |
| BsrDI | GCAATG | 1 cut(s) | 950 |
| BsrFI | RCCGGY | 1 cut(s) | 269 |
| BsrI | ACTGG | 3 cut(s) | 233, 434, 862 |
| BssAI | RCCGGY | 1 cut(s) | 269 |
| BssECI | CCNNGG | 6 cut(s) | 11, 102, 132, 149, 564, 597 |
| BssMI | GATC | 4 cut(s) | 210, 784, 968, 1039 |
| BssNI | GRCGYC | 1 cut(s) | 80 |
| BssT1I | CCWWGG | 2 cut(s) | 564, 597 |
| Bst2UI | CCWGG | 5 cut(s) | 12, 104, 134, 150, 818 |
| Bst4CI | ACNGT | 4 cut(s) | 389, 639, 869, 1160 |
| BstACI | GRCGYC | 1 cut(s) | 80 |
| BstC8I | GCNNGC | 7 cut(s) | 19, 47, 275, 645, 702, 898, 902 |
| BstDEI | CTNAG | 3 cut(s) | 654, 972, 1032 |
| BstEII | GGTNACC | 2 cut(s) | 812, 869 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 15 |
| BstF5I | GGATG | 2 cut(s) | 237, 826 |
| BstFNI | CGCG | 1 cut(s) | 957 |
| BstH2I | RGCGCY | 1 cut(s) | 83 |
| BstHHI | GCGC | 3 cut(s) | 82, 594, 957 |
| BstKTI | GATC | 4 cut(s) | 213, 787, 971, 1042 |
| BstMAI | GTCTC | 4 cut(s) | 233, 483, 521, 841 |
| BstMBI | GATC | 4 cut(s) | 210, 784, 968, 1039 |
| BstNI | CCWGG | 5 cut(s) | 12, 104, 134, 150, 818 |
| BstNSI | RCATGY | 3 cut(s) | 520, 884, 1132 |
| BstPI | GGTNACC | 2 cut(s) | 812, 869 |
| BstSCI | CCNGG | 6 cut(s) | 10, 102, 132, 148, 534, 816 |
| BstSFI | CTRYAG | 2 cut(s) | 360, 438 |
| BstSLI | GKGCMC | 4 cut(s) | 124, 412, 541, 985 |
| BstUI | CGCG | 1 cut(s) | 957 |
| BstV2I | GAAGAC | 1 cut(s) | 847 |
| BstX2I | RGATCY | 2 cut(s) | 968, 1039 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1050, 1055 |
| BstYI | RGATCY | 2 cut(s) | 968, 1039 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1032 |
| BsuRI | GGCC | 8 cut(s) | 45, 101, 122, 140, 539, 685, 700, 1008 |
| BtgZI | GCGATG | 1 cut(s) | 919 |
| BtsCI | GGATG | 2 cut(s) | 237, 826 |
| Cac8I | GCNNGC | 7 cut(s) | 19, 47, 275, 645, 702, 898, 902 |
| CaiI | CAGNNNCTG | 1 cut(s) | 936 |
| CfoI | GCGC | 3 cut(s) | 82, 594, 957 |
| Cfr10I | RCCGGY | 1 cut(s) | 269 |
| Cfr13I | GGNCC | 9 cut(s) | 100, 120, 121, 139, 196, 537, 538, 698, 1006 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 889, 924 |
| CviAII | CATG | 7 cut(s) | 70, 517, 552, 649, 881, 1002, 1129 |
| DdeI | CTNAG | 3 cut(s) | 654, 972, 1032 |
| DinI | GGCGCC | 1 cut(s) | 81 |
| DpnI | GATC | 4 cut(s) | 212, 786, 970, 1041 |
| DpnII | GATC | 4 cut(s) | 210, 784, 968, 1039 |
| EciI | GGCGGA | 1 cut(s) | 175 |
| Eco130I | CCWWGG | 2 cut(s) | 564, 597 |
| Eco147I | AGGCCT | 1 cut(s) | 685 |
| Eco24I | GRGCYC | 2 cut(s) | 124, 541 |
| Eco31I | GGTCTC | 1 cut(s) | 233 |
| Eco32I | GATATC | 1 cut(s) | 1145 |
| Eco47I | GGWCC | 1 cut(s) | 196 |
| Eco57I | CTGAAG | 3 cut(s) | 359, 841, 963 |
| Eco81I | CCTNAGG | 1 cut(s) | 1032 |
| Eco91I | GGTNACC | 2 cut(s) | 812, 869 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 15 |
| EcoO109I | RGGNCCY | 1 cut(s) | 121 |
| EcoO65I | GGTNACC | 2 cut(s) | 812, 869 |
| EcoRI | GAATTC | 2 cut(s) | 341, 757 |
| EcoRII | CCWGG | 5 cut(s) | 10, 102, 132, 148, 816 |
| EcoRV | GATATC | 1 cut(s) | 1145 |
| EcoT14I | CCWWGG | 2 cut(s) | 564, 597 |
| EcoT38I | GRGCYC | 2 cut(s) | 124, 541 |
| EgeI | GGCGCC | 1 cut(s) | 81 |
| EheI | GGCGCC | 1 cut(s) | 81 |
| ErhI | CCWWGG | 2 cut(s) | 564, 597 |
| FaeI | CATG | 7 cut(s) | 73, 520, 555, 652, 884, 1005, 1132 |
| FaqI | GGGAC | 1 cut(s) | 115 |
| FatI | CATG | 7 cut(s) | 69, 516, 551, 648, 880, 1001, 1128 |
| FauI | CCCGC | 2 cut(s) | 132, 889 |
| FokI | GGATG | 2 cut(s) | 244, 833 |
| FriOI | GRGCYC | 2 cut(s) | 124, 541 |
| FspBI | CTAG | 1 cut(s) | 1125 |
| GlaI | GCGC | 3 cut(s) | 81, 593, 956 |
| GsaI | CCCAGC | 3 cut(s) | 178, 723, 1155 |
| HaeII | RGCGCY | 1 cut(s) | 83 |
| HaeIII | GGCC | 8 cut(s) | 45, 101, 122, 140, 539, 685, 700, 1008 |
| HapII | CCGG | 2 cut(s) | 270, 535 |
| HhaI | GCGC | 3 cut(s) | 82, 594, 957 |
| Hin1I | GRCGYC | 1 cut(s) | 80 |
| Hin1II | CATG | 7 cut(s) | 73, 520, 555, 652, 884, 1005, 1132 |
| Hin6I | GCGC | 3 cut(s) | 80, 592, 955 |
| HinP1I | GCGC | 3 cut(s) | 80, 592, 955 |
| HinfI | GANTC | 1 cut(s) | 629 |
| HpaII | CCGG | 2 cut(s) | 270, 535 |
| HphI | GGTGA | 1 cut(s) | 881 |
| Hpy166II | GTNNAC | 2 cut(s) | 265, 983 |
| Hpy188I | TCNGA | 9 cut(s) | 322, 422, 457, 502, 623, 634, 756, 789, 995 |
| Hpy188III | TCNNGA | 5 cut(s) | 208, 524, 926, 1088, 1118 |
| Hpy8I | GTNNAC | 2 cut(s) | 265, 983 |
| Hpy99I | CGWCG | 2 cut(s) | 100, 194 |
| HpyAV | CCTTC | 1 cut(s) | 1026 |
| HpyCH4III | ACNGT | 4 cut(s) | 389, 639, 869, 1160 |
| HpyCH4V | TGCA | 7 cut(s) | 7, 223, 362, 440, 555, 983, 1079 |
| HpyF3I | CTNAG | 3 cut(s) | 654, 972, 1032 |
| Hsp92I | GRCGYC | 1 cut(s) | 80 |
| Hsp92II | CATG | 7 cut(s) | 73, 520, 555, 652, 884, 1005, 1132 |
| HspAI | GCGC | 3 cut(s) | 80, 592, 955 |
| KasI | GGCGCC | 1 cut(s) | 79 |
| KpnI | GGTACC | 1 cut(s) | 393 |
| Kzo9I | GATC | 4 cut(s) | 210, 784, 968, 1039 |
| LmnI | GCTCC | 1 cut(s) | 34 |
| LweI | GCATC | 1 cut(s) | 443 |
| MaeI | CTAG | 1 cut(s) | 1125 |
| MaeIII | GTNAC | 4 cut(s) | 505, 812, 829, 869 |
| MalI | GATC | 4 cut(s) | 212, 786, 970, 1041 |
| MboI | GATC | 4 cut(s) | 210, 784, 968, 1039 |
| MboII | GAAGA | 3 cut(s) | 847, 898, 956 |
| MflI | RGATCY | 2 cut(s) | 968, 1039 |
| MhlI | GDGCHC | 4 cut(s) | 124, 412, 541, 985 |
| MluCI | AATT | 5 cut(s) | 341, 415, 693, 757, 1162 |
| Mly113I | GGCGCC | 1 cut(s) | 80 |
| MlyI | GAGTC | 1 cut(s) | 638 |
| MmeI | TCCRAC | 2 cut(s) | 466, 1018 |
| MnlI | CCTC | 8 cut(s) | 96, 187, 193, 229, 316, 559, 1041, 1133 |
| MseI | TTAA | 2 cut(s) | 615, 962 |
| MslI | CAYNNNNRTG | 1 cut(s) | 74 |
| MspA1I | CMGCKG | 2 cut(s) | 704, 896 |
| MspI | CCGG | 2 cut(s) | 270, 535 |
| MspR9I | CCNGG | 6 cut(s) | 12, 104, 134, 150, 536, 818 |
| MvaI | CCWGG | 5 cut(s) | 12, 104, 134, 150, 818 |
| MvnI | CGCG | 1 cut(s) | 957 |
| NarI | GGCGCC | 1 cut(s) | 80 |
| NciI | CCSGG | 1 cut(s) | 536 |
| NdeII | GATC | 4 cut(s) | 210, 784, 968, 1039 |
| NlaIII | CATG | 7 cut(s) | 73, 520, 555, 652, 884, 1005, 1132 |
| NmuCI | GTSAC | 2 cut(s) | 505, 869 |
| NspI | RCATGY | 3 cut(s) | 520, 884, 1132 |
| PceI | AGGCCT | 1 cut(s) | 685 |
| PciI | ACATGT | 1 cut(s) | 880 |
| Pfl23II | CGTACG | 1 cut(s) | 200 |
| PflFI | GACNNNGTC | 1 cut(s) | 194 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 149 |
| PleI | GAGTC | 1 cut(s) | 637 |
| PluTI | GGCGCC | 1 cut(s) | 83 |
| PpsI | GAGTC | 1 cut(s) | 637 |
| PscI | ACATGT | 1 cut(s) | 880 |
| Psp6I | CCWGG | 5 cut(s) | 10, 102, 132, 148, 816 |
| PspEI | GGTNACC | 2 cut(s) | 812, 869 |
| PspFI | CCCAGC | 3 cut(s) | 174, 719, 1151 |
| PspGI | CCWGG | 5 cut(s) | 10, 102, 132, 148, 816 |
| PspLI | CGTACG | 1 cut(s) | 200 |
| PspOMI | GGGCCC | 2 cut(s) | 120, 537 |
| PspPI | GGNCC | 9 cut(s) | 100, 120, 121, 139, 196, 537, 538, 698, 1006 |
| PstI | CTGCAG | 2 cut(s) | 364, 442 |
| PstNI | CAGNNNCTG | 1 cut(s) | 936 |
| PsuI | RGATCY | 2 cut(s) | 968, 1039 |
| PsyI | GACNNNGTC | 1 cut(s) | 194 |
| PvuII | CAGCTG | 1 cut(s) | 704 |
| RseI | CAYNNNNRTG | 1 cut(s) | 74 |
| SaqAI | TTAA | 2 cut(s) | 615, 962 |
| Sau3AI | GATC | 4 cut(s) | 210, 784, 968, 1039 |
| Sau96I | GGNCC | 9 cut(s) | 100, 120, 121, 139, 196, 537, 538, 698, 1006 |
| ScaI | AGTACT | 2 cut(s) | 227, 372 |
| SchI | GAGTC | 1 cut(s) | 638 |
| ScrFI | CCNGG | 6 cut(s) | 12, 104, 134, 150, 536, 818 |
| SduI | GDGCHC | 4 cut(s) | 124, 412, 541, 985 |
| SfaNI | GCATC | 1 cut(s) | 443 |
| SfcI | CTRYAG | 2 cut(s) | 360, 438 |
| SfoI | GGCGCC | 1 cut(s) | 81 |
| SgrAI | CRCCGGYG | 1 cut(s) | 269 |
| SinI | GGWCC | 1 cut(s) | 196 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 74 |
| SmlI | CTYRAG | 2 cut(s) | 762, 1116 |
| SmoI | CTYRAG | 2 cut(s) | 762, 1116 |
| Sse9I | AATT | 5 cut(s) | 341, 415, 693, 757, 1162 |
| SseBI | AGGCCT | 1 cut(s) | 685 |
| SspDI | GGCGCC | 1 cut(s) | 79 |
| SspI | AATATT | 2 cut(s) | 256, 737 |
| SspMI | CTAG | 1 cut(s) | 1125 |
| StuI | AGGCCT | 1 cut(s) | 685 |
| StyD4I | CCNGG | 6 cut(s) | 10, 102, 132, 148, 534, 816 |
| StyI | CCWWGG | 2 cut(s) | 564, 597 |
| TaaI | ACNGT | 4 cut(s) | 389, 639, 869, 1160 |
| TasI | AATT | 5 cut(s) | 341, 415, 693, 757, 1162 |
| TatI | WGTACW | 3 cut(s) | 225, 370, 1131 |
| TauI | GCSGC | 3 cut(s) | 85, 1011, 1177 |
| Tru1I | TTAA | 2 cut(s) | 615, 962 |
| Tru9I | TTAA | 2 cut(s) | 615, 962 |
| TseFI | GTSAC | 2 cut(s) | 505, 869 |
| Tsp45I | GTSAC | 2 cut(s) | 505, 869 |
| TspDTI | ATGAA | 3 cut(s) | 674, 738, 990 |
| TspGWI | ACGGA | 4 cut(s) | 21, 69, 188, 524 |
| Tth111I | GACNNNGTC | 1 cut(s) | 194 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 149 |
| VneI | GTGCAC | 1 cut(s) | 981 |
| VpaK11BI | GGWCC | 1 cut(s) | 196 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 15 |
| XapI | RAATTY | 3 cut(s) | 341, 415, 757 |
| XceI | RCATGY | 3 cut(s) | 520, 884, 1132 |
| XspI | CTAG | 1 cut(s) | 1125 |
| ZrmI | AGTACT | 2 cut(s) | 227, 372 |