Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Forward (+)

2992719 .. 2997223

Gene Structure 4505 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000015982

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGAAGGCAAAGGAGAAAGGCACCGTGGGTCCTTTGGATCCTATTGTTTCCATTTGGCGCTTACCAGTGCTTGTAACAATTGTTGTTTTGGTTGTTTTTCTATGGTGGGCAGAATAGGATATGGTTCAACACACTTTTCCAAATGTTGTCTTCGTCTTGTGTGGTTTACTAAGAAACTTAGAAGTCATCATATGATTTATGCATTCAGAATCGCCAAGGCTTTTCGCGTTGCATCAGAACATGAGATAAATTTATTCTGCTTTGGGATCAGCTGGGTAAGAAGTGCCAGAATTGCCAAGGCTTCTCGCGTTGCATCAGAATATGAGATAAGGCTGTCTAACTTAGTTTATGTTCTCGCAAAGAATGGTGCATCTCTGCTTCTCTTGATAGATCTGTTCTGCTTTGGGATCAGCTGGATATTTGTTGGAAATCTGGATGCTAACATTACTGATGATGCAGTATGGAGCCCTGCTGCAGAGGCTTTGCAAGGATTAAACAATTCTCAGCTTGAGGAACAAAATATCCAACTTTTTTGGGGTTGCAGTCCTTCAAACAAGCAGCAGCAGGCTCAGGCAGATCCAAACCAATGGAATACCGGCTATTATGGACATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

205

Amino Acids

22.95

Weight (kDa)

8.7

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	21
AccII	CGCG	2 cut(s)	228, 309
AclWI	GGATC	5 cut(s)	33, 46, 275, 416, 572
AcsI	RAATTY	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	129, 552
AloI	GAACNNNNNNTCC	2 cut(s)	507, 539
AluBI	AGCT	3 cut(s)	273, 414, 508
AluI	AGCT	3 cut(s)	273, 414, 508
AlwI	GGATC	5 cut(s)	33, 46, 275, 416, 572
ApeKI	GCWGC	3 cut(s)	473, 559, 562
ApoI	RAATTY	1 cut(s)	250
AspLEI	GCGC	1 cut(s)	61
AspS9I	GGNCC	1 cut(s)	30
AvaII	GGWCC	1 cut(s)	30
BamHI	GGATCC	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	21
BanII	GRGCYC	1 cut(s)	470
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	460, 571, 574
BfmI	CTRYAG	1 cut(s)	474
BfoI	RGCGCY	1 cut(s)	62
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	3 cut(s)	474, 560, 563
BlsI	GCNGC	3 cut(s)	475, 561, 564
Bme18I	GGWCC	1 cut(s)	30
BmgT120I	GGNCC	1 cut(s)	30
BmiI	GGNNCC	4 cut(s)	23, 31, 40, 467
BmsI	GCATC	5 cut(s)	242, 323, 380, 427, 445
BpiI	GAAGAC	1 cut(s)	143
Bpu10I	CCTNAGC	1 cut(s)	570
BpuEI	CTTGAG	1 cut(s)	530
BsaJI	CCNNGG	3 cut(s)	25, 216, 297
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	1 cut(s)	66
BseDI	CCNNGG	3 cut(s)	25, 216, 297
BseGI	GGATG	1 cut(s)	442
BseMII	CTCAG	2 cut(s)	518, 584
BseNI	ACTGG	1 cut(s)	66
BseXI	GCAGC	3 cut(s)	460, 571, 574
BseYI	CCCAGC	1 cut(s)	273
Bsh1236I	CGCG	2 cut(s)	228, 309
BshNI	GGYRCC	1 cut(s)	21
BsiSI	CCGG	1 cut(s)	597
BsmI	GAATGC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	470
Bsp143I	GATC	5 cut(s)	38, 267, 391, 408, 577
BspCNI	CTCAG	2 cut(s)	517, 583
BspFNI	CGCG	2 cut(s)	228, 309
BspLI	GGNNCC	4 cut(s)	23, 31, 40, 467
BspMAI	CTGCAG	1 cut(s)	478
BspPI	GGATC	5 cut(s)	33, 46, 275, 416, 572
BspT107I	GGYRCC	1 cut(s)	21
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	3 cut(s)	25, 216, 297
BssMI	GATC	5 cut(s)	38, 267, 391, 408, 577
BssT1I	CCWWGG	2 cut(s)	216, 297
Bst4CI	ACNGT	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	567
BstDEI	CTNAG	5 cut(s)	171, 179, 343, 504, 570
BstDSI	CCRYGG	1 cut(s)	25
BstF5I	GGATG	1 cut(s)	442
BstFNI	CGCG	2 cut(s)	228, 309
BstH2I	RGCGCY	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	61
BstKTI	GATC	5 cut(s)	41, 270, 394, 411, 580
BstMBI	GATC	5 cut(s)	38, 267, 391, 408, 577
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 479
BstSFI	CTRYAG	1 cut(s)	474
BstUI	CGCG	2 cut(s)	228, 309
BstV1I	GCAGC	3 cut(s)	460, 571, 574
BstV2I	GAAGAC	1 cut(s)	143
BstX2I	RGATCY	3 cut(s)	38, 391, 577
BstXI	CCANNNNNNTGG	1 cut(s)	588
BstYI	RGATCY	3 cut(s)	38, 391, 577
BtgI	CCRYGG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	442
BtsIMutI	CAGTG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	567
CfoI	GCGC	1 cut(s)	61
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	1 cut(s)	30
CviAII	CATG	1 cut(s)	242
DdeI	CTNAG	5 cut(s)	171, 179, 343, 504, 570
DpnI	GATC	5 cut(s)	40, 269, 393, 410, 579
DpnII	GATC	5 cut(s)	38, 267, 391, 408, 577
Eco130I	CCWWGG	2 cut(s)	216, 297
Eco24I	GRGCYC	1 cut(s)	470
Eco47I	GGWCC	1 cut(s)	30
EcoO109I	RGGNCCY	1 cut(s)	30
EcoT14I	CCWWGG	2 cut(s)	216, 297
EcoT22I	ATGCAT	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	470
ErhI	CCWWGG	2 cut(s)	216, 297
FaeI	CATG	1 cut(s)	245
FatI	CATG	1 cut(s)	241
FauNDI	CATATG	1 cut(s)	192
Fnu4HI	GCNGC	3 cut(s)	474, 560, 563
FokI	GGATG	1 cut(s)	449
FriOI	GRGCYC	1 cut(s)	470
Fsp4HI	GCNGC	3 cut(s)	474, 560, 563
GlaI	GCGC	1 cut(s)	60
GluI	GCNGC	3 cut(s)	474, 560, 563
GsaI	CCCAGC	1 cut(s)	277
HaeII	RGCGCY	1 cut(s)	62
HapII	CCGG	1 cut(s)	597
HhaI	GCGC	1 cut(s)	61
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	59
HinP1I	GCGC	1 cut(s)	59
HinfI	GANTC	1 cut(s)	210
HpaII	CCGG	1 cut(s)	597
Hpy166II	GTNNAC	1 cut(s)	168
Hpy188I	TCNGA	3 cut(s)	209, 238, 319
Hpy188III	TCNNGA	2 cut(s)	385, 434
Hpy8I	GTNNAC	1 cut(s)	168
HpyAV	CCTTC	1 cut(s)	558
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	8 cut(s)	203, 233, 314, 371, 458, 476, 487, 543
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 479
HpyF3I	CTNAG	5 cut(s)	171, 179, 343, 504, 570
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	59
Kzo9I	GATC	5 cut(s)	38, 267, 391, 408, 577
LmnI	GCTCC	1 cut(s)	465
LpnPI	CCDG	9 cut(s)	79, 259, 301, 400, 419, 483, 551, 557, 610
Lsp1109I	GCAGC	3 cut(s)	460, 571, 574
LweI	GCATC	5 cut(s)	242, 323, 380, 427, 445
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	5 cut(s)	40, 269, 393, 410, 579
MboI	GATC	5 cut(s)	38, 267, 391, 408, 577
MboII	GAAGA	1 cut(s)	143
MfeI	CAATTG	1 cut(s)	79
MflI	RGATCY	3 cut(s)	38, 391, 577
MhlI	GDGCHC	1 cut(s)	470
MluCI	AATT	4 cut(s)	79, 250, 291, 499
MmeI	TCCRAC	2 cut(s)	406, 550
MnlI	CCTC	2 cut(s)	472, 505
Mph1103I	ATGCAT	1 cut(s)	205
MseI	TTAA	1 cut(s)	494
MspA1I	CMGCKG	2 cut(s)	273, 414
MspI	CCGG	1 cut(s)	597
MunI	CAATTG	1 cut(s)	79
Mva1269I	GAATGC	1 cut(s)	203
MvnI	CGCG	2 cut(s)	228, 309
MwoI	GCNNNNNNNGC	2 cut(s)	293, 479
NdeI	CATATG	1 cut(s)	192
NdeII	GATC	5 cut(s)	38, 267, 391, 408, 577
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	4 cut(s)	23, 31, 40, 467
NsiI	ATGCAT	1 cut(s)	205
PctI	GAATGC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	210
PkrI	GCNGC	3 cut(s)	475, 561, 564
PpuMI	RGGWCCY	1 cut(s)	30
Psp5II	RGGWCCY	1 cut(s)	30
PspFI	CCCAGC	1 cut(s)	273
PspN4I	GGNNCC	4 cut(s)	23, 31, 40, 467
PspPI	GGNCC	1 cut(s)	30
PspPPI	RGGWCCY	1 cut(s)	30
PstI	CTGCAG	1 cut(s)	478
PsuI	RGATCY	3 cut(s)	38, 391, 577
PvuII	CAGCTG	2 cut(s)	273, 414
SaqAI	TTAA	1 cut(s)	494
SatI	GCNGC	3 cut(s)	474, 560, 563
Sau3AI	GATC	5 cut(s)	38, 267, 391, 408, 577
Sau96I	GGNCC	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	470
SetI	ASST	3 cut(s)	275, 416, 510
SfaNI	GCATC	5 cut(s)	242, 323, 380, 427, 445
SfcI	CTRYAG	1 cut(s)	474
SinI	GGWCC	1 cut(s)	30
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	4 cut(s)	79, 250, 291, 499
StyI	CCWWGG	2 cut(s)	216, 297
TaaI	ACNGT	1 cut(s)	26
TasI	AATT	4 cut(s)	79, 250, 291, 499
TfiI	GAWTC	1 cut(s)	210
Tru1I	TTAA	1 cut(s)	494
Tru9I	TTAA	1 cut(s)	494
TscAI	CASTG	1 cut(s)	73
TseI	GCWGC	3 cut(s)	473, 559, 562
TspRI	CASTG	1 cut(s)	73
VpaK11BI	GGWCC	1 cut(s)	30
XapI	RAATTY	1 cut(s)	250
Zsp2I	ATGCAT	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.