Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Forward (+)

3914774 .. 3918243

Gene Structure 3470 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G11650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGATGCAGCAGCCACCACCCGGAGGTATCCTTCCACATCACGCTCCTCCTCCTTCTGCGCAACAACAGTACGGTTACCAACAACCTTACGGGATTGCTGGAGCTGCTCCACCACCACCACAGATGTGGAATCCTCAAGCGGCGGCGCCGCCATCAGTTCAGCCTACGACCGCTGACGAGATCCGGACTCTTTGGATCGGGGACTTACAGTATTGGATGGATGAGAATTTCCTCTACGGTTGCTTTGCTCATACCGGAGAGATGGTTTCTGCTAAAGTGATTCGTAACAAGCAAACCGGTCAAGTTGAAGGATACGGTTTCATTGAATTCGCATCTCATGCTGCTGCTGAAAGAGTTCTACAAACATTCAACAACGCTCCTATCCCGAGCTTTCCTGATCAGCTCTTTAGACTGAACTGGGCATCATTGAGTTCAGGAGATAAACGAGACGATTCACCGGACTACACGATATTTGTCGGTGATCTGGCTGCTGATGTTACGGATTATATCTTACTTGAGACGTTCAGAGCCTCTTATCCGTCAGTGAAGGGTGCAAAGGTTGTTATTGACAGAGTCACTGGACGTACAAAAGGATATGGGTTTGTTAGGTTTTCTGATGAAAGTGAACAGATCCGTGCTATGACGGAGATGAATGGCGTTCCTTGTTCTACTAGACCTATGAGAATTGGTCCCGCTGCTAGCAAGAAAGGTGTAACTGGTCAAAGAGATTCATACCAGAGCTCTGCTGCAGGGGTAACAACTGATAATGATCCAAATAACACAACTGTTTTTGTTGGTGGATTAGATGCATCTGTCACGGATGATCATCTGAAGAATGTCTTTAGCCAATATGGTGAGATTGTGCATGTGAAAATACCCGCTGGAAAGCGCTGTGGATTCGTTCAGTTTTCCGAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

306

Amino Acids

33.43

Weight (kDa)

5.69

Isoelectric Point (pI)

35.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	64 - 128	4.5e-11	RNA recognition motif
RRM_1	PF00076	157 - 219	3.9e-13	RNA recognition motif
RRM_1	PF00076	263 - 327	8.4e-16	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	60
AccB1I	GGYRCC	1 cut(s)	145
AccIII	TCCGGA	1 cut(s)	183
AciI	CCGC	6 cut(s)	140, 143, 149, 171, 693, 879
AclWI	GGATC	4 cut(s)	175, 203, 625, 764
AcsI	RAATTY	2 cut(s)	226, 326
AcuI	CTGAAG	1 cut(s)	851
AcyI	GRCGYC	1 cut(s)	146
AfaI	GTAC	2 cut(s)	71, 586
AfeI	AGCGCT	1 cut(s)	890
AfiI	CCNNNNNNNGG	2 cut(s)	20, 23
AgeI	ACCGGT	1 cut(s)	296
AgsI	TTSAA	3 cut(s)	308, 326, 370
AleI	CACNNNNGTG	1 cut(s)	124
AluBI	AGCT	4 cut(s)	104, 390, 403, 741
AluI	AGCT	4 cut(s)	104, 390, 403, 741
Alw21I	GWGCWC	1 cut(s)	743
Alw26I	GTCTC	2 cut(s)	441, 512
AlwI	GGATC	4 cut(s)	175, 203, 625, 764
Ama87I	CYCGRG	1 cut(s)	385
Aor13HI	TCCGGA	1 cut(s)	183
Aor51HI	AGCGCT	1 cut(s)	890
ApeKI	GCWGC	8 cut(s)	7, 10, 104, 341, 344, 488, 695, 746
ApoI	RAATTY	2 cut(s)	226, 326
AsiGI	ACCGGT	1 cut(s)	296
Asp700I	GAANNNNTTC	1 cut(s)	354
AspLEI	GCGC	3 cut(s)	61, 148, 891
AspS9I	GGNCC	1 cut(s)	689
AsuC2I	CCSGG	1 cut(s)	21
AsuHPI	GGTGA	3 cut(s)	447, 491, 866
AsuNHI	GCTAGC	1 cut(s)	698
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	1 cut(s)	689
BanI	GGYRCC	1 cut(s)	145
BanII	GRGCYC	1 cut(s)	743
Bbv12I	GWGCWC	1 cut(s)	743
BbvI	GCAGC	8 cut(s)	19, 22, 91, 328, 331, 475, 682, 733
BccI	CCATC	3 cut(s)	160, 211, 256
BciVI	GTATCC	2 cut(s)	38, 305
BclI	TGATCA	2 cut(s)	397, 823
BcnI	CCSGG	1 cut(s)	21
BcoDI	GTCTC	2 cut(s)	441, 512
BfaI	CTAG	2 cut(s)	672, 699
BfmI	CTRYAG	1 cut(s)	747
BfoI	RGCGCY	2 cut(s)	149, 892
BfuI	GTATCC	2 cut(s)	38, 305
Bme1390I	CCNGG	1 cut(s)	21
Bme18I	GGWCC	1 cut(s)	689
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	2 cut(s)	147, 691
BmrFI	CCNGG	1 cut(s)	21
BmrI	ACTGGG	1 cut(s)	427
BmsI	GCATC	4 cut(s)	341, 431, 796, 818
BmtI	GCTAGC	1 cut(s)	702
BmuI	ACTGGG	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	120
BpuEI	CTTGAG	2 cut(s)	120, 536
BpuMI	CCSGG	1 cut(s)	21
BsaBI	GATNNNNATC	2 cut(s)	768, 825
BsaHI	GRCGYC	1 cut(s)	146
BsaWI	WCCGGW	4 cut(s)	183, 254, 296, 457
BsaXI	ACNNNNNCTCC	2 cut(s)	249, 279
Bsc4I	CCNNNNNNNGG	2 cut(s)	20, 23
Bse118I	RCCGGY	1 cut(s)	296
Bse1I	ACTGG	3 cut(s)	422, 583, 721
Bse8I	GATNNNNATC	2 cut(s)	768, 825
BseAI	TCCGGA	1 cut(s)	183
BseGI	GGATG	3 cut(s)	222, 226, 826
BseJI	GATNNNNATC	2 cut(s)	768, 825
BseLI	CCNNNNNNNGG	2 cut(s)	20, 23
BseNI	ACTGG	3 cut(s)	422, 583, 721
BseRI	GAGGAG	2 cut(s)	36, 39
BseXI	GCAGC	8 cut(s)	19, 22, 91, 328, 331, 475, 682, 733
Bsh1285I	CGRYCG	1 cut(s)	171
BshNI	GGYRCC	1 cut(s)	145
BshTI	ACCGGT	1 cut(s)	296
BsiEI	CGRYCG	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	743
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	5 cut(s)	21, 184, 255, 297, 458
BslFI	GGGAC	2 cut(s)	215, 675
BslI	CCNNNNNNNGG	2 cut(s)	20, 23
BsmAI	GTCTC	2 cut(s)	441, 512
BsmBI	CGTCTC	2 cut(s)	441, 512
BsmFI	GGGAC	2 cut(s)	215, 675
BsoBI	CYCGRG	1 cut(s)	385
Bsp1286I	GDGCHC	1 cut(s)	743
Bsp13I	TCCGGA	1 cut(s)	183
Bsp143I	GATC	7 cut(s)	180, 195, 397, 481, 630, 769, 823
BspACI	CCGC	6 cut(s)	140, 143, 149, 171, 693, 879
BspEI	TCCGGA	1 cut(s)	183
BspLI	GGNNCC	2 cut(s)	147, 691
BspMAI	CTGCAG	1 cut(s)	751
BspOI	GCTAGC	1 cut(s)	702
BspPI	GGATC	4 cut(s)	175, 203, 625, 764
BspT107I	GGYRCC	1 cut(s)	145
BsrFI	RCCGGY	1 cut(s)	296
BsrI	ACTGG	3 cut(s)	422, 583, 721
BssAI	RCCGGY	1 cut(s)	296
BssMI	GATC	7 cut(s)	180, 195, 397, 481, 630, 769, 823
BssNI	GRCGYC	1 cut(s)	146
Bst4CI	ACNGT	6 cut(s)	69, 74, 210, 239, 317, 787
BstACI	GRCGYC	1 cut(s)	146
BstAPI	GCANNNNNTGC	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	700
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	3 cut(s)	222, 226, 826
BstH2I	RGCGCY	2 cut(s)	149, 892
BstHHI	GCGC	3 cut(s)	61, 148, 891
BstKTI	GATC	7 cut(s)	183, 198, 400, 484, 633, 772, 826
BstMAI	GTCTC	2 cut(s)	441, 512
BstMBI	GATC	7 cut(s)	180, 195, 397, 481, 630, 769, 823
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	2 cut(s)	104, 338
BstNSI	RCATGY	1 cut(s)	869
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	19
BstSFI	CTRYAG	1 cut(s)	747
BstV1I	GCAGC	8 cut(s)	19, 22, 91, 328, 331, 475, 682, 733
BstX2I	RGATCY	2 cut(s)	180, 630
BstXI	CCANNNNNNTGG	1 cut(s)	126
BstYI	RGATCY	2 cut(s)	180, 630
BsuI	GTATCC	2 cut(s)	38, 305
BtsCI	GGATG	3 cut(s)	222, 226, 826
BtsIMutI	CAGTG	2 cut(s)	549, 576
Cac8I	GCNNGC	1 cut(s)	700
CfoI	GCGC	3 cut(s)	61, 148, 891
Cfr10I	RCCGGY	1 cut(s)	296
Cfr13I	GGNCC	1 cut(s)	689
Csp6I	GTAC	2 cut(s)	70, 585
CspAI	ACCGGT	1 cut(s)	296
CviAII	CATG	2 cut(s)	338, 866
CviJI	RGCY	9 cut(s)	13, 104, 163, 390, 403, 488, 530, 741, 846
CviKI_1	RGCY	9 cut(s)	13, 104, 163, 390, 403, 488, 530, 741, 846
CviQI	GTAC	2 cut(s)	70, 585
DinI	GGCGCC	1 cut(s)	147
DpnI	GATC	7 cut(s)	182, 197, 399, 483, 632, 771, 825
DpnII	GATC	7 cut(s)	180, 195, 397, 481, 630, 769, 823
Ecl136II	GAGCTC	1 cut(s)	741
Eco24I	GRGCYC	1 cut(s)	743
Eco47I	GGWCC	1 cut(s)	689
Eco47III	AGCGCT	1 cut(s)	890
Eco53kI	GAGCTC	1 cut(s)	741
Eco57I	CTGAAG	1 cut(s)	851
Eco88I	CYCGRG	1 cut(s)	385
Eco91I	GGTNACC	1 cut(s)	74
EcoICRI	GAGCTC	1 cut(s)	741
EcoO65I	GGTNACC	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	326
EcoT22I	ATGCAT	1 cut(s)	811
EcoT38I	GRGCYC	1 cut(s)	743
EgeI	GGCGCC	1 cut(s)	147
EheI	GGCGCC	1 cut(s)	147
Esp3I	CGTCTC	2 cut(s)	441, 512
FaeI	CATG	2 cut(s)	341, 869
FaiI	YATR	9 cut(s)	252, 339, 507, 597, 641, 680, 733, 852, 867
FalI	AAGNNNNNCTT	2 cut(s)	824, 856
FaqI	GGGAC	2 cut(s)	215, 675
FatI	CATG	2 cut(s)	337, 865
FauI	CCCGC	2 cut(s)	700, 886
FbaI	TGATCA	2 cut(s)	397, 823
FokI	GGATG	3 cut(s)	229, 233, 833
FriOI	GRGCYC	1 cut(s)	743
FspBI	CTAG	2 cut(s)	672, 699
FspI	TGCGCA	1 cut(s)	60
GlaI	GCGC	3 cut(s)	60, 147, 890
GsuI	CTGGAG	1 cut(s)	120
HaeII	RGCGCY	2 cut(s)	149, 892
HapII	CCGG	5 cut(s)	21, 184, 255, 297, 458
HhaI	GCGC	3 cut(s)	61, 148, 891
Hin1I	GRCGYC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	341, 869
Hin6I	GCGC	3 cut(s)	59, 146, 889
HinP1I	GCGC	3 cut(s)	59, 146, 889
HinfI	GANTC	7 cut(s)	130, 187, 280, 452, 573, 728, 897
HpaII	CCGG	5 cut(s)	21, 184, 255, 297, 458
HphI	GGTGA	3 cut(s)	447, 491, 866
Hpy166II	GTNNAC	1 cut(s)	626
Hpy188I	TCNGA	4 cut(s)	527, 616, 831, 913
Hpy188III	TCNNGA	4 cut(s)	184, 385, 395, 435
Hpy8I	GTNNAC	1 cut(s)	626
HpyAV	CCTTC	4 cut(s)	41, 63, 302, 541
HpyCH4III	ACNGT	6 cut(s)	69, 74, 210, 239, 317, 787
HpyCH4IV	ACGT	2 cut(s)	521, 583
HpyCH4V	TGCA	5 cut(s)	7, 554, 749, 809, 865
HpyF10VI	GCNNNNNNNGC	2 cut(s)	104, 338
HpySE526I	ACGT	2 cut(s)	521, 583
Hsp92I	GRCGYC	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	341, 869
HspAI	GCGC	3 cut(s)	59, 146, 889
KasI	GGCGCC	1 cut(s)	145
Kpn2I	TCCGGA	1 cut(s)	183
Ksp22I	TGATCA	2 cut(s)	397, 823
Kzo9I	GATC	7 cut(s)	180, 195, 397, 481, 630, 769, 823
LmnI	GCTCC	4 cut(s)	49, 101, 112, 382
Lsp1109I	GCAGC	8 cut(s)	19, 22, 91, 328, 331, 475, 682, 733
LweI	GCATC	4 cut(s)	341, 431, 796, 818
MaeI	CTAG	2 cut(s)	672, 699
MaeII	ACGT	2 cut(s)	521, 583
MaeIII	GTNAC	7 cut(s)	74, 284, 496, 574, 712, 754, 814
MalI	GATC	7 cut(s)	182, 197, 399, 483, 632, 771, 825
MboI	GATC	7 cut(s)	180, 195, 397, 481, 630, 769, 823
MboII	GAAGA	1 cut(s)	844
MflI	RGATCY	2 cut(s)	180, 630
MhlI	GDGCHC	1 cut(s)	743
MluCI	AATT	3 cut(s)	226, 326, 684
Mly113I	GGCGCC	1 cut(s)	146
MlyI	GAGTC	2 cut(s)	181, 582
MnlI	CCTC	6 cut(s)	17, 57, 60, 144, 242, 541
Mph1103I	ATGCAT	1 cut(s)	811
MroI	TCCGGA	1 cut(s)	183
MroXI	GAANNNNTTC	1 cut(s)	354
MslI	CAYNNNNRTG	1 cut(s)	124
MspA1I	CMGCKG	3 cut(s)	173, 695, 881
MspI	CCGG	5 cut(s)	21, 184, 255, 297, 458
MspR9I	CCNGG	1 cut(s)	21
MwoI	GCNNNNNNNGC	2 cut(s)	104, 338
NarI	GGCGCC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	21
NdeII	GATC	7 cut(s)	180, 195, 397, 481, 630, 769, 823
NheI	GCTAGC	1 cut(s)	698
NlaIII	CATG	2 cut(s)	341, 869
NlaIV	GGNNCC	2 cut(s)	147, 691
NmuCI	GTSAC	2 cut(s)	574, 814
NsbI	TGCGCA	1 cut(s)	60
NsiI	ATGCAT	1 cut(s)	811
NspI	RCATGY	1 cut(s)	869
OliI	CACNNNNGTG	1 cut(s)	124
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	5 cut(s)	130, 280, 452, 728, 897
PflFI	GACNNNGTC	1 cut(s)	572
PinAI	ACCGGT	1 cut(s)	296
PleI	GAGTC	2 cut(s)	181, 581
PluTI	GGCGCC	1 cut(s)	149
PpsI	GAGTC	2 cut(s)	181, 581
Psp124BI	GAGCTC	1 cut(s)	743
PspEI	GGTNACC	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	147, 691
PspPI	GGNCC	1 cut(s)	689
PstI	CTGCAG	1 cut(s)	751
PsuI	RGATCY	2 cut(s)	180, 630
PsyI	GACNNNGTC	1 cut(s)	572
RsaI	GTAC	2 cut(s)	71, 586
RsaNI	GTAC	2 cut(s)	70, 585
RseI	CAYNNNNRTG	1 cut(s)	124
SacI	GAGCTC	1 cut(s)	743
Sau3AI	GATC	7 cut(s)	180, 195, 397, 481, 630, 769, 823
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	2 cut(s)	181, 582
ScrFI	CCNGG	1 cut(s)	21
SduI	GDGCHC	1 cut(s)	743
SfaNI	GCATC	4 cut(s)	341, 431, 796, 818
SfcI	CTRYAG	1 cut(s)	747
SfoI	GGCGCC	1 cut(s)	147
SinI	GGWCC	1 cut(s)	689
SmiMI	CAYNNNNRTG	1 cut(s)	124
SmlI	CTYRAG	2 cut(s)	135, 515
SmoI	CTYRAG	2 cut(s)	135, 515
Sse9I	AATT	3 cut(s)	226, 326, 684
SsiI	CCGC	6 cut(s)	140, 143, 149, 171, 693, 879
SspDI	GGCGCC	1 cut(s)	145
SspMI	CTAG	2 cut(s)	672, 699
SstI	GAGCTC	1 cut(s)	743
StyD4I	CCNGG	1 cut(s)	19
TaaI	ACNGT	6 cut(s)	69, 74, 210, 239, 317, 787
TaiI	ACGT	2 cut(s)	524, 586
TasI	AATT	3 cut(s)	226, 326, 684
TauI	GCSGC	3 cut(s)	143, 146, 151
TfiI	GAWTC	5 cut(s)	130, 280, 452, 728, 897
TscAI	CASTG	2 cut(s)	549, 583
TseFI	GTSAC	2 cut(s)	574, 814
TseI	GCWGC	8 cut(s)	7, 10, 104, 341, 344, 488, 695, 746
Tsp45I	GTSAC	2 cut(s)	574, 814
TspDTI	ATGAA	4 cut(s)	310, 633, 665, 720
TspGWI	ACGGA	5 cut(s)	515, 528, 623, 659, 833
TspRI	CASTG	2 cut(s)	549, 583
Tth111I	GACNNNGTC	1 cut(s)	572
VpaK11BI	GGWCC	1 cut(s)	689
XapI	RAATTY	2 cut(s)	226, 326
XceI	RCATGY	1 cut(s)	869
XcmI	CCANNNNNNNNNTGG	1 cut(s)	123
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	2 cut(s)	672, 699
Zsp2I	ATGCAT	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.