Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005574

Physical Location & Seq

Genomic Coordinates Forward (+)

93484767 .. 93486094

Gene Structure 1328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGATACTGTTTGGAGTGCATGTTTCAAGCAATTGCCAGGAACTGTACTAGTAGGCTGGAGCCGTGCTGAAGAGGCTTTGCAAGGATTAAACAATTCTCAGATTGGTGGACAAAATATCCGACTTTCTTGGGGTCGCAGTCCTTCAAACAAGCAGCAGGCTCAGGCAGATCCTAACCAATGGAATGCTGGCTATTATGGATATGCACCAACCCCCGAGGGATATGGATATGCCCAAGTATCCCAAGACCCTAACATGTACTATGGAGGGTATCCTGCTGGATATGGCAATTACCAGCAGTCACAGCAGCAACAGCAGCAGCAAGTGGGTTATAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0010035 GO:0010193 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046677 GO:0050896 GO:0070717 GO:0097159 GO:1901363 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

112

Amino Acids

12.43

Weight (kDa)

4.99

Isoelectric Point (pI)

68.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005574)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11650 AT1G11650
fragaria_vesca	FvH4_3g02320
malus_domestica	MD10G1319600.v1.1
prunus_persica	Prupe.4G022900_v2.0.a1 Prupe.4G022900_v2.0.a1
pyrus_communis	pycom10g27050
rosa_chinensis	RchiOBHm_Chr5g0003511 RchiOBHm_Chr5g0003531
rosa_laevigata	RLG00000015982 RLG00000031149
rosa_multiflora	Rmu_sc0004279.1_g000010 Rmu_sc0004279.1_g000022 Rmu_sc0009787.1_g000004 Rmu_sc0009787.1_g000007
rosa_roxburghii	Rroxscaffold_1G00072430
rosa_rugosa	Rorug01G0486600 Rorug04G0403900
rosa_samantha	Rh2AG042000 Rh2CG041400 Rh2DG041000 Rh5AG030600 Rh5AG031000 Rh5BG030100 Rh5CG033500 Rh5DG030700
rosa_wichuraiana	Rw5G002850 Rw5G002890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	164
AcuI	CTGAAG	1 cut(s)	90
AfaI	GTAC	2 cut(s)	48, 260
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	2 cut(s)	28, 147
AhlI	ACTAGT	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	37
AlwI	GGATC	1 cut(s)	164
AlwNI	CAGNNNCTG	1 cut(s)	44
Ama87I	CYCGRG	1 cut(s)	215
ApeKI	GCWGC	4 cut(s)	154, 307, 316, 319
AvaI	CYCGRG	1 cut(s)	215
BbvI	GCAGC	4 cut(s)	166, 319, 328, 331
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	39
BciVI	GTATCC	2 cut(s)	250, 282
BcuI	ACTAGT	1 cut(s)	49
BfaI	CTAG	1 cut(s)	50
BfuI	GTATCC	2 cut(s)	250, 282
BisI	GCNGC	4 cut(s)	155, 308, 317, 320
BlsI	GCNGC	4 cut(s)	156, 309, 318, 321
Bme1390I	CCNGG	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	39
BpmI	CTGGAG	1 cut(s)	79
Bpu10I	CCTNAGC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	216
BsaXI	ACNNNNNCTCC	2 cut(s)	7, 37
BseBI	CCWGG	1 cut(s)	39
BseDI	CCNNGG	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	113, 176
BseXI	GCAGC	4 cut(s)	166, 319, 328, 331
BsiHKCI	CYCGRG	1 cut(s)	215
BsmI	GAATGC	1 cut(s)	190
BsoBI	CYCGRG	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	169
BspCNI	CTCAG	2 cut(s)	112, 175
BspLI	GGNNCC	1 cut(s)	62
BspPI	GGATC	1 cut(s)	164
BssECI	CCNNGG	1 cut(s)	216
BssMI	GATC	1 cut(s)	169
Bst2UI	CCWGG	1 cut(s)	39
Bst4CI	ACNGT	2 cut(s)	10, 46
Bst6I	CTCTTC	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	159, 190
BstDEI	CTNAG	2 cut(s)	99, 162
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 304, 313, 316
BstNI	CCWGG	1 cut(s)	39
BstNSI	RCATGY	2 cut(s)	24, 259
BstSCI	CCNGG	1 cut(s)	37
BstV1I	GCAGC	4 cut(s)	166, 319, 328, 331
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
BsuI	GTATCC	2 cut(s)	250, 282
Cac8I	GCNNGC	2 cut(s)	159, 190
CaiI	CAGNNNCTG	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	47, 259
CviAII	CATG	2 cut(s)	21, 256
CviJI	RGCY	5 cut(s)	57, 63, 77, 161, 192
CviKI_1	RGCY	5 cut(s)	57, 63, 77, 161, 192
CviQI	GTAC	2 cut(s)	47, 259
DdeI	CTNAG	2 cut(s)	99, 162
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	90
Eco88I	CYCGRG	1 cut(s)	215
EcoRII	CCWGG	1 cut(s)	37
FaeI	CATG	2 cut(s)	24, 259
FaiI	YATR	9 cut(s)	22, 198, 204, 225, 231, 257, 264, 285, 333
FatI	CATG	2 cut(s)	20, 255
Fnu4HI	GCNGC	4 cut(s)	155, 308, 317, 320
Fsp4HI	GCNGC	4 cut(s)	155, 308, 317, 320
FspBI	CTAG	1 cut(s)	50
GluI	GCNGC	4 cut(s)	155, 308, 317, 320
GsuI	CTGGAG	1 cut(s)	79
Hin1II	CATG	2 cut(s)	24, 259
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	102, 122
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	2 cut(s)	10, 46
HpyCH4V	TGCA	3 cut(s)	20, 82, 206
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 304, 313, 316
HpyF3I	CTNAG	2 cut(s)	99, 162
Hsp92II	CATG	2 cut(s)	24, 259
Kzo9I	GATC	1 cut(s)	169
LmnI	GCTCC	1 cut(s)	60
LpnPI	CCDG	9 cut(s)	24, 43, 51, 143, 149, 174, 264, 288, 308
Lsp1109I	GCAGC	4 cut(s)	166, 319, 328, 331
MaeI	CTAG	1 cut(s)	50
MaeIII	GTNAC	1 cut(s)	300
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	83
MfeI	CAATTG	1 cut(s)	32
MflI	RGATCY	1 cut(s)	169
MluCI	AATT	3 cut(s)	32, 94, 289
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	3 cut(s)	67, 211, 260
MseI	TTAA	1 cut(s)	89
MspR9I	CCNGG	1 cut(s)	39
MunI	CAATTG	1 cut(s)	32
Mva1269I	GAATGC	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	39
MwoI	GCNNNNNNNGC	4 cut(s)	74, 304, 313, 316
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	2 cut(s)	24, 259
NlaIV	GGNNCC	1 cut(s)	62
NmuCI	GTSAC	1 cut(s)	300
NspI	RCATGY	2 cut(s)	24, 259
PciI	ACATGT	1 cut(s)	255
PctI	GAATGC	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	156, 309, 318, 321
PscI	ACATGT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	37
PspGI	CCWGG	1 cut(s)	37
PspN4I	GGNNCC	1 cut(s)	62
PstNI	CAGNNNCTG	1 cut(s)	44
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	2 cut(s)	48, 260
RsaNI	GTAC	2 cut(s)	47, 259
SaqAI	TTAA	1 cut(s)	89
SatI	GCNGC	4 cut(s)	155, 308, 317, 320
Sau3AI	GATC	1 cut(s)	169
ScrFI	CCNGG	1 cut(s)	39
SpeI	ACTAGT	1 cut(s)	49
Sse9I	AATT	3 cut(s)	32, 94, 289
SspMI	CTAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	37
TaaI	ACNGT	2 cut(s)	10, 46
TasI	AATT	3 cut(s)	32, 94, 289
TatI	WGTACW	2 cut(s)	46, 258
Tru1I	TTAA	1 cut(s)	89
Tru9I	TTAA	1 cut(s)	89
TseFI	GTSAC	1 cut(s)	300
TseI	GCWGC	4 cut(s)	154, 307, 316, 319
Tsp45I	GTSAC	1 cut(s)	300
XceI	RCATGY	2 cut(s)	24, 259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	185
XspI	CTAG	1 cut(s)	50

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.