Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004308.1

Orthogroup ID

OG0031297

Physical Location & Seq

Genomic Coordinates Forward (+)

36925 .. 44153

Gene Structure 7229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

atggagaatttggaaaaacttgttcaggaggagacatgggatgttgaggagggaagaattgttgcagcagcaacactaatggatggacatataaagacatcagacaaagatgagagggtgatttgttgcattgtcaattcagttggatatttcactaagacgtctggtgaacttgctgagagtgtgtccaaaataattgattctcaattcgcagatggcgtggatatgtcggaagtgcaggatgaattttcagcagttataacaagagcattgataaccttggtgcatggcctagaaaccaagtttgacaatgaaatggctgcaataacacaagtcccatgggtacacttgaaagtgttggtgaccaatcagtccctaggccgctatcatatgctgcttatcgccgtcgtcgctcttgtaattggatttggacgatgcgttggggtcataaaaggagaggaaggagagttaggagatggcggtgatgaggtaggatttgagtcgggcctggaccgagcagaggtcctggacggtaaggcggcagttgttggtggtgtcggcatcgaaccagaggacggggacttgtggcagaggttaaggagggcgatgcggccctgggggtcggccgcgacgaggataaggtggcaatttgaaggattggtagagaggaaggcccgaccgagggggagtggaaggcttcatgatgaccggattccagtcaccagagtccgcgggcagccgcctgtaactggagtcctgcaatatctccgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0006810 GO:0006890 GO:0006950 GO:0006970 GO:0007009 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010256 GO:0010286 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps53_N

Protein Analysis

257

Amino Acids

28.27

Weight (kDa)

5.1

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031297)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004308.1_g000009
rosa_samantha	Rh3BG114900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	260
AasI	GACNNNNNNGTC	1 cut(s)	370
AatII	GACGTC	1 cut(s)	164
AccII	CGCG	2 cut(s)	629, 732
AciI	CCGC	8 cut(s)	382, 480, 539, 610, 627, 730, 732, 740
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	2 cut(s)	7, 245
AcyI	GRCGYC	1 cut(s)	161
AfaI	GTAC	1 cut(s)	345
AfiI	CCNNNNNNNGG	6 cut(s)	520, 575, 633, 681, 682, 749
AgsI	TTSAA	2 cut(s)	352, 653
AjnI	CCWGG	3 cut(s)	507, 525, 614
Alw26I	GTCTC	1 cut(s)	26
AoxI	GGCC	6 cut(s)	289, 379, 505, 611, 624, 672
ApeKI	GCWGC	5 cut(s)	65, 68, 320, 394, 736
ApoI	RAATTY	2 cut(s)	7, 245
AspA2I	CCTAGG	1 cut(s)	376
AspS9I	GGNCC	5 cut(s)	505, 511, 523, 612, 673
AsuHPI	GGTGA	5 cut(s)	130, 179, 373, 494, 712
AvaII	GGWCC	2 cut(s)	511, 523
AvrII	CCTAGG	1 cut(s)	376
BbvI	GCAGC	5 cut(s)	77, 80, 307, 381, 748
BccI	CCATC	3 cut(s)	77, 209, 470
BceAI	ACGGC	1 cut(s)	389
BciT130I	CCWGG	3 cut(s)	509, 527, 616
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	2 cut(s)	293, 377
BlnI	CCTAGG	1 cut(s)	376
Bme1390I	CCNGG	3 cut(s)	509, 527, 616
Bme18I	GGWCC	2 cut(s)	511, 523
BmgT120I	GGNCC	5 cut(s)	505, 511, 523, 612, 673
BmrFI	CCNGG	3 cut(s)	509, 527, 616
BmsI	GCATC	3 cut(s)	425, 570, 597
BpmI	CTGGAG	1 cut(s)	771
BsaHI	GRCGYC	1 cut(s)	161
BsaJI	CCNNGG	7 cut(s)	279, 338, 376, 614, 615, 680, 730
BsaWI	WCCGGW	1 cut(s)	708
Bsc4I	CCNNNNNNNGG	6 cut(s)	520, 575, 633, 681, 682, 749
Bse1I	ACTGG	2 cut(s)	716, 754
BseBI	CCWGG	3 cut(s)	509, 527, 616
BseDI	CCNNGG	7 cut(s)	279, 338, 376, 614, 615, 680, 730
BseGI	GGATG	3 cut(s)	46, 88, 247
BseLI	CCNNNNNNNGG	6 cut(s)	520, 575, 633, 681, 682, 749
BseMII	CTCAG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	716, 754
BseRI	GAGGAG	2 cut(s)	44, 62
BseX3I	CGGCCG	1 cut(s)	624
BseXI	GCAGC	5 cut(s)	77, 80, 307, 381, 748
BsgI	GTGCAG	1 cut(s)	257
Bsh1236I	CGCG	2 cut(s)	629, 732
Bsh1285I	CGRYCG	2 cut(s)	627, 680
BshFI	GGCC	6 cut(s)	291, 381, 507, 613, 626, 674
BsiEI	CGRYCG	2 cut(s)	627, 680
BsiSI	CCGG	1 cut(s)	709
BslFI	GGGAC	3 cut(s)	320, 358, 593
BslI	CCNNNNNNNGG	6 cut(s)	520, 575, 633, 681, 682, 749
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	3 cut(s)	320, 358, 593
BsnI	GGCC	6 cut(s)	291, 381, 507, 613, 626, 674
Bsp19I	CCATGG	1 cut(s)	338
BspACI	CCGC	8 cut(s)	382, 480, 539, 610, 627, 730, 732, 740
BspANI	GGCC	6 cut(s)	291, 381, 507, 613, 626, 674
BspCNI	CTCAG	1 cut(s)	169
BspFNI	CGCG	2 cut(s)	629, 732
BspHI	TCATGA	1 cut(s)	700
BsrI	ACTGG	2 cut(s)	716, 754
BssECI	CCNNGG	7 cut(s)	279, 338, 376, 614, 615, 680, 730
BssNI	GRCGYC	1 cut(s)	161
BssT1I	CCWWGG	3 cut(s)	279, 338, 376
Bst2UI	CCWGG	3 cut(s)	509, 527, 616
Bst4CI	ACNGT	1 cut(s)	533
BstACI	GRCGYC	1 cut(s)	161
BstC8I	GCNNGC	1 cut(s)	734
BstDEI	CTNAG	2 cut(s)	156, 177
BstDSI	CCRYGG	2 cut(s)	338, 730
BstEII	GGTNACC	1 cut(s)	361
BstF5I	GGATG	3 cut(s)	46, 88, 247
BstFNI	CGCG	2 cut(s)	629, 732
BstMAI	GTCTC	1 cut(s)	26
BstMCI	CGRYCG	2 cut(s)	627, 680
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	3 cut(s)	509, 527, 616
BstPI	GGTNACC	1 cut(s)	361
BstSCI	CCNGG	3 cut(s)	507, 525, 614
BstUI	CGCG	2 cut(s)	629, 732
BstV1I	GCAGC	5 cut(s)	77, 80, 307, 381, 748
BstZI	CGGCCG	1 cut(s)	624
BsuRI	GGCC	6 cut(s)	291, 381, 507, 613, 626, 674
BtgI	CCRYGG	2 cut(s)	338, 730
BtgZI	GCGATG	1 cut(s)	620
BtsCI	GGATG	3 cut(s)	46, 88, 247
Cac8I	GCNNGC	1 cut(s)	734
CciI	TCATGA	1 cut(s)	700
Cfr13I	GGNCC	5 cut(s)	505, 511, 523, 612, 673
Cfr42I	CCGCGG	1 cut(s)	733
Csp6I	GTAC	1 cut(s)	344
CviAII	CATG	4 cut(s)	36, 287, 339, 701
CviJI	RGCY	9 cut(s)	291, 320, 381, 507, 613, 626, 674, 697, 739
CviKI_1	RGCY	9 cut(s)	291, 320, 381, 507, 613, 626, 674, 697, 739
CviQI	GTAC	1 cut(s)	344
DdeI	CTNAG	2 cut(s)	156, 177
DrdI	GACNNNNNNGTC	1 cut(s)	370
DseDI	GACNNNNNNGTC	1 cut(s)	370
EaeI	YGGCCR	1 cut(s)	624
EagI	CGGCCG	1 cut(s)	624
EclXI	CGGCCG	1 cut(s)	624
Eco130I	CCWWGG	3 cut(s)	279, 338, 376
Eco47I	GGWCC	2 cut(s)	511, 523
Eco52I	CGGCCG	1 cut(s)	624
Eco91I	GGTNACC	1 cut(s)	361
EcoO109I	RGGNCCY	1 cut(s)	523
EcoO65I	GGTNACC	1 cut(s)	361
EcoRII	CCWGG	3 cut(s)	507, 525, 614
EcoT14I	CCWWGG	3 cut(s)	279, 338, 376
ErhI	CCWWGG	3 cut(s)	279, 338, 376
FaeI	CATG	4 cut(s)	39, 290, 342, 704
FaqI	GGGAC	3 cut(s)	320, 358, 593
FatI	CATG	4 cut(s)	35, 286, 338, 700
FauI	CCCGC	1 cut(s)	725
FauNDI	CATATG	1 cut(s)	390
FokI	GGATG	3 cut(s)	53, 95, 254
FspBI	CTAG	2 cut(s)	293, 377
GsuI	CTGGAG	1 cut(s)	771
HaeIII	GGCC	6 cut(s)	291, 381, 507, 613, 626, 674
HapII	CCGG	1 cut(s)	709
Hin1I	GRCGYC	1 cut(s)	161
Hin1II	CATG	4 cut(s)	39, 290, 342, 704
HinfI	GANTC	5 cut(s)	200, 500, 712, 726, 753
HpaII	CCGG	1 cut(s)	709
HphI	GGTGA	5 cut(s)	130, 179, 373, 494, 712
Hpy166II	GTNNAC	2 cut(s)	170, 346
Hpy188I	TCNGA	3 cut(s)	103, 232, 770
Hpy188III	TCNNGA	2 cut(s)	26, 701
Hpy8I	GTNNAC	2 cut(s)	170, 346
Hpy99I	CGWCG	3 cut(s)	410, 413, 634
HpyAV	CCTTC	4 cut(s)	455, 647, 664, 687
HpyCH4III	ACNGT	1 cut(s)	533
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	6 cut(s)	65, 129, 238, 286, 323, 760
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	2 cut(s)	156, 177
HpySE526I	ACGT	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	161
Hsp92II	CATG	4 cut(s)	39, 290, 342, 704
KspI	CCGCGG	1 cut(s)	733
Lsp1109I	GCAGC	5 cut(s)	77, 80, 307, 381, 748
LweI	GCATC	3 cut(s)	425, 570, 597
MaeI	CTAG	2 cut(s)	293, 377
MaeII	ACGT	1 cut(s)	161
MaeIII	GTNAC	3 cut(s)	361, 718, 745
MboII	GAAGA	1 cut(s)	66
MluCI	AATT	8 cut(s)	7, 57, 136, 195, 206, 245, 420, 647
MlyI	GAGTC	3 cut(s)	509, 735, 762
MmeI	TCCRAC	2 cut(s)	124, 210
MseI	TTAA	1 cut(s)	596
MspA1I	CMGCKG	1 cut(s)	732
MspI	CCGG	1 cut(s)	709
MspR9I	CCNGG	3 cut(s)	509, 527, 616
MvaI	CCWGG	3 cut(s)	509, 527, 616
MvnI	CGCG	2 cut(s)	629, 732
MwoI	GCNNNNNNNGC	1 cut(s)	410
NcoI	CCATGG	1 cut(s)	338
NdeI	CATATG	1 cut(s)	390
NlaIII	CATG	4 cut(s)	39, 290, 342, 704
NmuCI	GTSAC	2 cut(s)	361, 718
PagI	TCATGA	1 cut(s)	700
PasI	CCCWGGG	1 cut(s)	615
PcsI	WCGNNNNNNNCGW	2 cut(s)	216, 629
PfeI	GAWTC	2 cut(s)	200, 712
PfoI	TCCNGGA	1 cut(s)	525
PleI	GAGTC	3 cut(s)	508, 734, 761
PpsI	GAGTC	3 cut(s)	508, 734, 761
PpuMI	RGGWCCY	1 cut(s)	523
PsiI	TTATAA	1 cut(s)	260
Psp5II	RGGWCCY	1 cut(s)	523
Psp6I	CCWGG	3 cut(s)	507, 525, 614
PspEI	GGTNACC	1 cut(s)	361
PspGI	CCWGG	3 cut(s)	507, 525, 614
PspPI	GGNCC	5 cut(s)	505, 511, 523, 612, 673
PspPPI	RGGWCCY	1 cut(s)	523
RsaI	GTAC	1 cut(s)	345
RsaNI	GTAC	1 cut(s)	344
SacII	CCGCGG	1 cut(s)	733
SaqAI	TTAA	1 cut(s)	596
Sau96I	GGNCC	5 cut(s)	505, 511, 523, 612, 673
SchI	GAGTC	3 cut(s)	509, 735, 762
ScrFI	CCNGG	3 cut(s)	509, 527, 616
SetI	ASST	6 cut(s)	164, 281, 492, 525, 596, 644
SfaNI	GCATC	3 cut(s)	425, 570, 597
Sfr303I	CCGCGG	1 cut(s)	733
SgrBI	CCGCGG	1 cut(s)	733
SinI	GGWCC	2 cut(s)	511, 523
Sse9I	AATT	8 cut(s)	7, 57, 136, 195, 206, 245, 420, 647
SsiI	CCGC	8 cut(s)	382, 480, 539, 610, 627, 730, 732, 740
SspMI	CTAG	2 cut(s)	293, 377
StyD4I	CCNGG	3 cut(s)	507, 525, 614
StyI	CCWWGG	3 cut(s)	279, 338, 376
TaaI	ACNGT	1 cut(s)	533
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	1 cut(s)	564
TaqII	GACCGA	2 cut(s)	528, 694
TasI	AATT	8 cut(s)	7, 57, 136, 195, 206, 245, 420, 647
TauI	GCSGC	5 cut(s)	384, 542, 613, 629, 742
TfiI	GAWTC	2 cut(s)	200, 712
Tru1I	TTAA	1 cut(s)	596
Tru9I	TTAA	1 cut(s)	596
TseFI	GTSAC	2 cut(s)	361, 718
TseI	GCWGC	5 cut(s)	65, 68, 320, 394, 736
Tsp45I	GTSAC	2 cut(s)	361, 718
TspDTI	ATGAA	3 cut(s)	258, 327, 689
VpaK11BI	GGWCC	2 cut(s)	511, 523
XapI	RAATTY	2 cut(s)	7, 245
XmaJI	CCTAGG	1 cut(s)	376
XspI	CTAG	2 cut(s)	293, 377
ZraI	GACGTC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.