Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0031297

Physical Location & Seq

Genomic Coordinates Forward (+)

9473415 .. 9476223

Gene Structure 2809 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG114900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGATGGACATATAAAGACATCAGACAAAGATGAGAGAGTGATTTGTTGCATTGTCAATTCAGTTGGATATTTCACTAAGACGTCTGGTGAACTTGCTGAGAGTGTGTCCAAAATAATTGATTCTCAATTCGCAGATGGCGTGGATATGTCGGAAGTGCAGGATGAATTTTCAGCAGTTATAACAAGAGCATTGATAACCTTGGTGCATGGCCTAGAAACCAAGTTTGACAATGAAATGGCTGCAATAACACAAGTCCCATGGGTACACTTGAAAGTGTTGGTGACCAATCAGTGTATGTTAATGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000938 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005794 GO:0006810 GO:0006890 GO:0006950 GO:0006970 GO:0007009 GO:0008150 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010256 GO:0010286 GO:0012505 GO:0016020 GO:0016043 GO:0016192 GO:0016197 GO:0016482 GO:0031090 GO:0031410 GO:0031982 GO:0031984 GO:0032991 GO:0042147 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044433 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0071840 GO:0097708 GO:0098588 GO:0098791 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Vps53_N

Protein Analysis

103

Amino Acids

11.37

Weight (kDa)

4.68

Isoelectric Point (pI)

18.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031297)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0004308.1_g000009
rosa_samantha	Rh3BG114900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	182
AatII	GACGTC	1 cut(s)	86
AcsI	RAATTY	1 cut(s)	167
AcyI	GRCGYC	1 cut(s)	83
AfaI	GTAC	1 cut(s)	267
AgsI	TTSAA	1 cut(s)	274
AoxI	GGCC	1 cut(s)	211
ApeKI	GCWGC	1 cut(s)	242
ApoI	RAATTY	1 cut(s)	167
AsuHPI	GGTGA	2 cut(s)	101, 295
BbvI	GCAGC	1 cut(s)	229
BccI	CCATC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	215
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	83
BsaJI	CCNNGG	2 cut(s)	201, 260
BseDI	CCNNGG	2 cut(s)	201, 260
BseGI	GGATG	2 cut(s)	10, 169
BseMII	CTCAG	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	229
BsgI	GTGCAG	1 cut(s)	179
BshFI	GGCC	1 cut(s)	213
BslFI	GGGAC	1 cut(s)	242
BsmFI	GGGAC	1 cut(s)	242
BsnI	GGCC	1 cut(s)	213
Bsp19I	CCATGG	1 cut(s)	260
BspANI	GGCC	1 cut(s)	213
BspCNI	CTCAG	1 cut(s)	91
BssECI	CCNNGG	2 cut(s)	201, 260
BssNI	GRCGYC	1 cut(s)	83
BssT1I	CCWWGG	2 cut(s)	201, 260
BstACI	GRCGYC	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	78, 99
BstDSI	CCRYGG	1 cut(s)	260
BstEII	GGTNACC	1 cut(s)	283
BstF5I	GGATG	2 cut(s)	10, 169
BstPI	GGTNACC	1 cut(s)	283
BstV1I	GCAGC	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	213
BtgI	CCRYGG	1 cut(s)	260
BtsCI	GGATG	2 cut(s)	10, 169
BtsIMutI	CAGTG	1 cut(s)	299
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	2 cut(s)	209, 261
CviJI	RGCY	2 cut(s)	213, 242
CviKI_1	RGCY	2 cut(s)	213, 242
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	2 cut(s)	78, 99
Eco130I	CCWWGG	2 cut(s)	201, 260
Eco91I	GGTNACC	1 cut(s)	283
EcoO65I	GGTNACC	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	201, 260
ErhI	CCWWGG	2 cut(s)	201, 260
FaeI	CATG	2 cut(s)	212, 264
FaiI	YATR	8 cut(s)	12, 14, 149, 182, 210, 262, 299, 310
FaqI	GGGAC	1 cut(s)	242
FatI	CATG	2 cut(s)	208, 260
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	2 cut(s)	17, 176
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	215
GluI	GCNGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	213
Hin1I	GRCGYC	1 cut(s)	83
Hin1II	CATG	2 cut(s)	212, 264
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	2 cut(s)	101, 295
Hpy166II	GTNNAC	2 cut(s)	92, 268
Hpy188I	TCNGA	2 cut(s)	25, 154
Hpy8I	GTNNAC	2 cut(s)	92, 268
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	51, 160, 208, 245
HpyF3I	CTNAG	2 cut(s)	78, 99
HpySE526I	ACGT	1 cut(s)	83
Hsp92I	GRCGYC	1 cut(s)	83
Hsp92II	CATG	2 cut(s)	212, 264
LpnPI	CCDG	2 cut(s)	72, 146
Lsp1109I	GCAGC	1 cut(s)	229
MaeI	CTAG	1 cut(s)	215
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	283
MluCI	AATT	4 cut(s)	58, 117, 128, 167
MmeI	TCCRAC	2 cut(s)	46, 132
MseI	TTAA	1 cut(s)	302
NcoI	CCATGG	1 cut(s)	260
NlaIII	CATG	2 cut(s)	212, 264
NmuCI	GTSAC	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	244
PsiI	TTATAA	1 cut(s)	182
PspEI	GGTNACC	1 cut(s)	283
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	1 cut(s)	243
SetI	ASST	2 cut(s)	86, 203
Sse9I	AATT	4 cut(s)	58, 117, 128, 167
SspMI	CTAG	1 cut(s)	215
StyI	CCWWGG	2 cut(s)	201, 260
TaiI	ACGT	1 cut(s)	86
TasI	AATT	4 cut(s)	58, 117, 128, 167
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	1 cut(s)	299
TseFI	GTSAC	1 cut(s)	283
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	2 cut(s)	180, 249
TspRI	CASTG	1 cut(s)	299
XapI	RAATTY	1 cut(s)	167
XspI	CTAG	1 cut(s)	215
ZraI	GACGTC	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.