Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004339.1

Orthogroup ID

OG0031072

Physical Location & Seq

Genomic Coordinates Forward (+)

78676 .. 81489

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004339.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

atgaccgaaagaccgaaagaccggaagggaccgatccggaccagctggttcggtctgggttttagaaggaaaataagtgttttcggcccggttcggtccctatacacttggtggcggtccggtcccgttaatagacctaaactcaatctaaactcaatctgcgactcggccgactccgcctgcaactctctcacaatcgatccggactgctcctctgccgactcctcctccaactctctcagtcacaatcgatcttcctcacaatcgatccggactgctcgatcttcctcagccctcagtcactcactcactcagcccccagaaatcggtattcctcacctctgggaagagaaagatcctgctgcacagagaaagagagagagaaagatctcaccgtcgtccgatacgcctccgagcaagcctgggccgacgcccgcgctgagggcaagcattacccccggaactgttttgatcattctgggatttctggctagaaggttcaagggcaaaagggttgtctttttgaagcagctatgttctggcttgcttttggtcactgtcagttctcattatgatggtgataatgatgaaatggttgttgttgggaatgatggaaatgatgtgtctcagcaaggtgaggacaaggaaccagccagggaaatagaagctacattacaaacagaaaatgaagcaacaactcaagcatcccgaggttcgccgaaaaacttgaaaaagagaagaagagaaagtaaaggcagaaccaaggttttaaatatcggtattttcatatctatcgatactttgaaaaagggagatatcggatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0002181 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005783 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0010467 GO:0012505 GO:0015934 GO:0016020 GO:0016043 GO:0019538 GO:0022607 GO:0022613 GO:0022618 GO:0022625 GO:0022626 GO:0030054 GO:0031974 GO:0031981 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0042221 GO:0042254 GO:0042255 GO:0042273 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0050896 GO:0055044 GO:0065003 GO:0070013 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0071944 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L6e Ribosomal_L6e_N

Protein Analysis

274

Amino Acids

30.06

Weight (kDa)

9.9

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031072)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0000474.1_g000004 Rmu_sc0004339.1_g000022

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	437
AccIII	TCCGGA	3 cut(s)	36, 202, 270
AciI	CCGC	3 cut(s)	115, 177, 435
AclWI	GGATC	4 cut(s)	28, 194, 262, 350
AcoI	YGGCCR	1 cut(s)	168
AcyI	GRCGYC	1 cut(s)	431
AdeI	CACNNNGTG	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	326, 441
AgsI	TTSAA	4 cut(s)	502, 526, 730, 805
AjnI	CCWGG	2 cut(s)	421, 653
AluBI	AGCT	3 cut(s)	45, 532, 668
AluI	AGCT	3 cut(s)	45, 532, 668
Alw26I	GTCTC	1 cut(s)	630
AlwI	GGATC	4 cut(s)	28, 194, 262, 350
Ama87I	CYCGRG	1 cut(s)	708
Aor13HI	TCCGGA	3 cut(s)	36, 202, 270
AoxI	GGCC	3 cut(s)	85, 168, 425
ApeKI	GCWGC	2 cut(s)	362, 529
ArsI	GACNNNNNNTTYG	2 cut(s)	501, 533
AspLEI	GCGC	1 cut(s)	439
AspS9I	GGNCC	7 cut(s)	29, 39, 86, 96, 117, 122, 425
AsuC2I	CCSGG	2 cut(s)	89, 459
AsuHPI	GGTGA	4 cut(s)	329, 384, 590, 647
AvaI	CYCGRG	1 cut(s)	708
AvaII	GGWCC	5 cut(s)	29, 39, 96, 117, 122
BarI	GAAGNNNNNNTAC	2 cut(s)	657, 689
BbvCI	CCTCAGC	2 cut(s)	289, 440
BbvI	GCAGC	2 cut(s)	349, 541
BccI	CCATC	2 cut(s)	569, 605
BciT130I	CCWGG	2 cut(s)	423, 655
BclI	TGATCA	1 cut(s)	471
BcnI	CCSGG	2 cut(s)	89, 459
BcoDI	GTCTC	1 cut(s)	630
BfaI	CTAG	1 cut(s)	492
BglII	AGATCT	1 cut(s)	387
BisI	GCNGC	2 cut(s)	363, 530
BlsI	GCNGC	2 cut(s)	364, 531
Bme1390I	CCNGG	4 cut(s)	89, 423, 459, 655
Bme18I	GGWCC	5 cut(s)	29, 39, 96, 117, 122
BmeT110I	CYCGRG	1 cut(s)	708
BmgT120I	GGNCC	7 cut(s)	29, 39, 86, 96, 117, 122, 425
BmiI	GGNNCC	4 cut(s)	30, 98, 124, 648
BmrFI	CCNGG	4 cut(s)	89, 423, 459, 655
BmsI	GCATC	1 cut(s)	713
Bpu10I	CCTNAGC	2 cut(s)	289, 440
BpuEI	CTTGAG	1 cut(s)	684
BpuMI	CCSGG	2 cut(s)	89, 459
Bsa29I	ATCGAT	4 cut(s)	198, 250, 266, 795
BsaHI	GRCGYC	1 cut(s)	431
BsaJI	CCNNGG	5 cut(s)	422, 457, 654, 709, 762
BsaWI	WCCGGW	5 cut(s)	21, 36, 119, 202, 270
BsaXI	ACNNNNNCTCC	2 cut(s)	212, 242
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 441
BseAI	TCCGGA	3 cut(s)	36, 202, 270
BseBI	CCWGG	2 cut(s)	423, 655
BseCI	ATCGAT	4 cut(s)	198, 250, 266, 795
BseDI	CCNNGG	5 cut(s)	422, 457, 654, 709, 762
BseGI	GGATG	1 cut(s)	704
BseLI	CCNNNNNNNGG	2 cut(s)	326, 441
BseMII	CTCAG	6 cut(s)	253, 303, 310, 326, 431, 641
BseRI	GAGGAG	3 cut(s)	202, 214, 217
BseX3I	CGGCCG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	349, 541
BsgI	GTGCAG	1 cut(s)	348
Bsh1236I	CGCG	1 cut(s)	437
Bsh1285I	CGRYCG	1 cut(s)	171
BshFI	GGCC	3 cut(s)	87, 170, 427
BshVI	ATCGAT	4 cut(s)	198, 250, 266, 795
BsiEI	CGRYCG	1 cut(s)	171
BsiHKCI	CYCGRG	1 cut(s)	708
BsiSI	CCGG	7 cut(s)	22, 37, 89, 120, 203, 271, 459
BslFI	GGGAC	3 cut(s)	42, 82, 108
BslI	CCNNNNNNNGG	2 cut(s)	326, 441
BsmAI	GTCTC	1 cut(s)	630
BsmFI	GGGAC	3 cut(s)	42, 82, 108
BsnI	GGCC	3 cut(s)	87, 170, 427
BsoBI	CYCGRG	1 cut(s)	708
Bsp13I	TCCGGA	3 cut(s)	36, 202, 270
Bsp143I	GATC	8 cut(s)	33, 199, 251, 267, 281, 355, 387, 471
BspACI	CCGC	3 cut(s)	115, 177, 435
BspANI	GGCC	3 cut(s)	87, 170, 427
BspCNI	CTCAG	6 cut(s)	252, 302, 309, 325, 432, 640
BspDI	ATCGAT	4 cut(s)	198, 250, 266, 795
BspEI	TCCGGA	3 cut(s)	36, 202, 270
BspFNI	CGCG	1 cut(s)	437
BspLI	GGNNCC	4 cut(s)	30, 98, 124, 648
BspPI	GGATC	4 cut(s)	28, 194, 262, 350
BssECI	CCNNGG	5 cut(s)	422, 457, 654, 709, 762
BssMI	GATC	8 cut(s)	33, 199, 251, 267, 281, 355, 387, 471
BssNI	GRCGYC	1 cut(s)	431
BssT1I	CCWWGG	1 cut(s)	762
Bst2UI	CCWGG	2 cut(s)	423, 655
Bst4CI	ACNGT	3 cut(s)	396, 466, 559
Bst6I	CTCTTC	2 cut(s)	342, 736
BstACI	GRCGYC	1 cut(s)	431
BstC8I	GCNNGC	5 cut(s)	181, 419, 435, 448, 545
BstDEI	CTNAG	6 cut(s)	239, 289, 296, 312, 440, 627
BstF5I	GGATG	1 cut(s)	704
BstFNI	CGCG	1 cut(s)	437
BstHHI	GCGC	1 cut(s)	439
BstKTI	GATC	8 cut(s)	36, 202, 254, 270, 284, 358, 390, 474
BstMAI	GTCTC	1 cut(s)	630
BstMBI	GATC	8 cut(s)	33, 199, 251, 267, 281, 355, 387, 471
BstMCI	CGRYCG	1 cut(s)	171
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 443
BstNI	CCWGG	2 cut(s)	423, 655
BstSCI	CCNGG	4 cut(s)	87, 421, 457, 653
BstUI	CGCG	1 cut(s)	437
BstV1I	GCAGC	2 cut(s)	349, 541
BstX2I	RGATCY	2 cut(s)	355, 387
BstYI	RGATCY	2 cut(s)	355, 387
BstZI	CGGCCG	1 cut(s)	168
Bsu15I	ATCGAT	4 cut(s)	198, 250, 266, 795
BsuRI	GGCC	3 cut(s)	87, 170, 427
BsuTUI	ATCGAT	4 cut(s)	198, 250, 266, 795
BtsCI	GGATG	1 cut(s)	704
BtsIMutI	CAGTG	1 cut(s)	555
Cac8I	GCNNGC	5 cut(s)	181, 419, 435, 448, 545
CfoI	GCGC	1 cut(s)	439
Cfr13I	GGNCC	7 cut(s)	29, 39, 86, 96, 117, 122, 425
ClaI	ATCGAT	4 cut(s)	198, 250, 266, 795
CpoI	CGGWCCG	1 cut(s)	117
CseI	GACGC	1 cut(s)	439
CspI	CGGWCCG	1 cut(s)	117
DdeI	CTNAG	6 cut(s)	239, 289, 296, 312, 440, 627
DpnI	GATC	8 cut(s)	35, 201, 253, 269, 283, 357, 389, 473
DpnII	GATC	8 cut(s)	33, 199, 251, 267, 281, 355, 387, 471
DraI	TTTAAA	1 cut(s)	771
DraIII	CACNNNGTG	1 cut(s)	111
EaeI	YGGCCR	1 cut(s)	168
EagI	CGGCCG	1 cut(s)	168
Eam1104I	CTCTTC	2 cut(s)	342, 736
EarI	CTCTTC	2 cut(s)	342, 736
EciI	GGCGGA	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	168
Eco130I	CCWWGG	1 cut(s)	762
Eco32I	GATATC	1 cut(s)	817
Eco47I	GGWCC	5 cut(s)	29, 39, 96, 117, 122
Eco52I	CGGCCG	1 cut(s)	168
Eco88I	CYCGRG	1 cut(s)	708
EcoRII	CCWGG	2 cut(s)	421, 653
EcoRV	GATATC	1 cut(s)	817
EcoT14I	CCWWGG	1 cut(s)	762
ErhI	CCWWGG	1 cut(s)	762
FaiI	YATR	4 cut(s)	103, 535, 573, 788
FaqI	GGGAC	3 cut(s)	42, 82, 108
FauI	CCCGC	1 cut(s)	442
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	363, 530
FokI	GGATG	1 cut(s)	691
Fsp4HI	GCNGC	2 cut(s)	363, 530
FspBI	CTAG	1 cut(s)	492
GlaI	GCGC	1 cut(s)	438
GluI	GCNGC	2 cut(s)	363, 530
HaeIII	GGCC	3 cut(s)	87, 170, 427
HapII	CCGG	7 cut(s)	22, 37, 89, 120, 203, 271, 459
HgaI	GACGC	1 cut(s)	439
HhaI	GCGC	1 cut(s)	439
Hin1I	GRCGYC	1 cut(s)	431
Hin6I	GCGC	1 cut(s)	437
HinP1I	GCGC	1 cut(s)	437
HinfI	GANTC	3 cut(s)	164, 173, 221
HpaII	CCGG	7 cut(s)	22, 37, 89, 120, 203, 271, 459
HphI	GGTGA	4 cut(s)	329, 384, 590, 647
Hpy188I	TCNGA	3 cut(s)	403, 414, 821
Hpy188III	TCNNGA	4 cut(s)	37, 203, 271, 708
Hpy99I	CGWCG	2 cut(s)	400, 433
HpyAV	CCTTC	3 cut(s)	19, 60, 489
HpyCH4III	ACNGT	3 cut(s)	396, 466, 559
HpyCH4V	TGCA	2 cut(s)	183, 365
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 443
HpyF3I	CTNAG	6 cut(s)	239, 289, 296, 312, 440, 627
Hsp92I	GRCGYC	1 cut(s)	431
HspAI	GCGC	1 cut(s)	437
Kpn2I	TCCGGA	3 cut(s)	36, 202, 270
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	8 cut(s)	33, 199, 251, 267, 281, 355, 387, 471
LmnI	GCTCC	1 cut(s)	215
Lsp1109I	GCAGC	2 cut(s)	349, 541
LweI	GCATC	1 cut(s)	713
MaeI	CTAG	1 cut(s)	492
MaeIII	GTNAC	3 cut(s)	242, 299, 553
MalI	GATC	8 cut(s)	35, 201, 253, 269, 283, 357, 389, 473
MboI	GATC	8 cut(s)	33, 199, 251, 267, 281, 355, 387, 471
MboII	GAAGA	5 cut(s)	246, 276, 359, 750, 753
MflI	RGATCY	2 cut(s)	355, 387
MlyI	GAGTC	3 cut(s)	158, 167, 215
MmeI	TCCRAC	1 cut(s)	255
MroI	TCCGGA	3 cut(s)	36, 202, 270
MseI	TTAA	2 cut(s)	129, 770
MslI	CAYNNNNRTG	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	45
MspI	CCGG	7 cut(s)	22, 37, 89, 120, 203, 271, 459
MspR9I	CCNGG	4 cut(s)	89, 423, 459, 655
MvaI	CCWGG	2 cut(s)	423, 655
MvnI	CGCG	1 cut(s)	437
MwoI	GCNNNNNNNGC	2 cut(s)	176, 443
NciI	CCSGG	2 cut(s)	89, 459
NdeII	GATC	8 cut(s)	33, 199, 251, 267, 281, 355, 387, 471
NlaIV	GGNNCC	4 cut(s)	30, 98, 124, 648
NmeAIII	GCCGAG	1 cut(s)	146
NmuCI	GTSAC	3 cut(s)	242, 299, 553
PkrI	GCNGC	2 cut(s)	364, 531
PleI	GAGTC	3 cut(s)	158, 167, 215
PpsI	GAGTC	3 cut(s)	158, 167, 215
Psp6I	CCWGG	2 cut(s)	421, 653
PspGI	CCWGG	2 cut(s)	421, 653
PspN4I	GGNNCC	4 cut(s)	30, 98, 124, 648
PspPI	GGNCC	7 cut(s)	29, 39, 86, 96, 117, 122, 425
PsuI	RGATCY	2 cut(s)	355, 387
PvuII	CAGCTG	1 cut(s)	45
RseI	CAYNNNNRTG	1 cut(s)	573
Rsr2I	CGGWCCG	1 cut(s)	117
RsrII	CGGWCCG	1 cut(s)	117
SaqAI	TTAA	2 cut(s)	129, 770
SatI	GCNGC	2 cut(s)	363, 530
Sau3AI	GATC	8 cut(s)	33, 199, 251, 267, 281, 355, 387, 471
Sau96I	GGNCC	7 cut(s)	29, 39, 86, 96, 117, 122, 425
SchI	GAGTC	3 cut(s)	158, 167, 215
ScrFI	CCNGG	4 cut(s)	89, 423, 459, 655
SetI	ASST	9 cut(s)	47, 139, 342, 500, 534, 637, 670, 715, 768
SfaNI	GCATC	1 cut(s)	713
SinI	GGWCC	5 cut(s)	29, 39, 96, 117, 122
SmiMI	CAYNNNNRTG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	699
SmoI	CTYRAG	1 cut(s)	699
SsiI	CCGC	3 cut(s)	115, 177, 435
SspMI	CTAG	1 cut(s)	492
StyD4I	CCNGG	4 cut(s)	87, 421, 457, 653
StyI	CCWWGG	1 cut(s)	762
TaaI	ACNGT	3 cut(s)	396, 466, 559
TaqI	TCGA	5 cut(s)	198, 250, 266, 280, 795
TaqII	GACCGA	5 cut(s)	20, 28, 41, 46, 84
Tru1I	TTAA	2 cut(s)	129, 770
Tru9I	TTAA	2 cut(s)	129, 770
TscAI	CASTG	1 cut(s)	562
TseFI	GTSAC	3 cut(s)	242, 299, 553
TseI	GCWGC	2 cut(s)	362, 529
Tsp45I	GTSAC	3 cut(s)	242, 299, 553
TspDTI	ATGAA	3 cut(s)	603, 702, 775
TspRI	CASTG	1 cut(s)	562
VpaK11BI	GGWCC	5 cut(s)	29, 39, 96, 117, 122
XspI	CTAG	1 cut(s)	492

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.